Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38000 * 119.77829 * 2 1 4 4 C 1.43209 * 120.25593 * 0.02562 * 3 2 1 5 5 N 3.47429 * 80.09992 * 0.02562 * 2 1 3 6 6 C 1.41584 * 119.48541 * 180.27564 * 3 2 1 7 7 C 1.36003 * 119.01798 * 359.46856 * 6 3 2 8 8 C 1.40720 * 119.51770 * 0.27537 * 7 6 3 9 9 O 1.21987 * 119.74661 * 179.97438 * 8 7 6 10 10 N 1.34543 * 120.50223 * 359.97438 * 8 7 6 11 11 C 1.46510 * 119.48181 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47292 * 87.89311 * 11 10 8 13 13 C 1.53005 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46872 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47095 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99738 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00293 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99522 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47392 * 119.99819 * 19 17 15 22 22 H 1.48499 * 109.47268 * 240.00028 * 19 17 15 23 23 H 1.09000 * 109.47201 * 235.14942 * 1 2 3 24 24 H 1.08999 * 109.47684 * 355.15456 * 1 2 3 25 25 H 1.08998 * 109.46914 * 115.15582 * 1 2 3 26 26 H 1.08001 * 120.48770 * 179.74019 * 6 3 2 27 27 H 1.08002 * 120.23767 * 180.29837 * 7 6 3 28 28 H 1.08996 * 109.46575 * 207.89645 * 11 10 8 29 29 H 1.09003 * 109.46773 * 327.89077 * 11 10 8 30 30 H 1.09008 * 109.47245 * 299.99893 * 12 11 10 31 31 H 1.08994 * 109.47554 * 59.99886 * 12 11 10 32 32 H 1.09000 * 109.46514 * 299.99326 * 13 12 11 33 33 H 1.08999 * 109.47333 * 60.00212 * 13 12 11 34 34 H 1.09000 * 109.47436 * 299.99880 * 14 13 12 35 35 H 1.09003 * 109.47436 * 59.99893 * 14 13 12 36 36 H 0.97004 * 119.99621 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 1.4770 2.4384 0.0006 5 7 0.9096 3.4226 0.0015 6 6 3.6081 1.1906 -0.0059 7 6 4.2618 -0.0021 -0.0005 8 6 3.5212 -1.1986 0.0050 9 8 4.1032 -2.2707 0.0094 10 7 2.1761 -1.1692 0.0054 11 6 1.4273 -2.4285 0.0117 12 6 1.2128 -2.8870 1.4555 13 6 0.4314 -4.2025 1.4619 14 6 0.2175 -4.6614 2.9057 15 6 -0.5527 -5.9567 2.9122 16 1 -0.8586 -6.4077 1.9798 17 6 -0.8669 -6.5661 4.1085 18 7 -0.4939 -6.0171 5.2439 19 14 -1.8209 -8.1720 4.1164 20 1 -2.1188 -8.5777 2.7193 21 1 -1.0098 -9.2264 4.7763 22 1 -3.0932 -7.9883 4.8599 23 1 -0.3633 -0.5872 0.8433 24 1 -0.3634 1.0239 0.0868 25 1 -0.3633 -0.4368 -0.9302 26 1 4.1608 2.1184 -0.0102 27 1 5.3414 -0.0306 0.0000 28 1 0.4608 -2.2788 -0.4694 29 1 1.9897 -3.1882 -0.5311 30 1 2.1795 -3.0367 1.9366 31 1 0.6506 -2.1273 1.9983 32 1 -0.5352 -4.0532 0.9808 33 1 0.9941 -4.9621 0.9193 34 1 1.1842 -4.8107 3.3866 35 1 -0.3450 -3.9020 3.4489 36 1 -0.7153 -6.4456 6.0855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385239533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -15.275092 kcal Electronic energy + Delta-G solvation = -18427.879453 eV Core-core repulsion = 15490.166493 eV Total energy + Delta-G solvation = -2937.712960 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.76928 -38.84304 -37.77010 -36.83920 -35.56802 -34.04350 -32.86388 -30.61714 -28.90857 -27.20898 -24.86248 -24.33015 -22.81039 -21.89550 -20.32138 -18.74510 -18.45696 -17.63339 -17.06073 -16.64076 -16.33186 -16.21932 -15.01656 -14.96185 -14.75396 -14.66906 -14.53320 -14.23306 -14.17504 -13.80036 -13.68919 -13.57107 -13.13202 -12.90270 -12.75616 -12.52520 -12.31971 -12.19973 -12.16687 -11.52135 -11.42760 -11.26455 -11.10201 -10.89438 -10.55229 -9.03946 -8.19329 -6.30286 -0.30442 0.25749 1.31681 1.40917 1.41852 1.54633 1.73265 2.02875 2.41891 2.70927 2.88134 3.14442 3.21410 3.63257 3.68747 3.91765 3.97473 4.17858 4.25901 4.43935 4.48683 4.57819 4.60894 4.77320 4.85306 4.91146 5.01504 5.07569 5.13261 5.26397 5.27556 5.37159 5.55062 5.76333 5.87650 5.90887 6.25531 6.51722 6.84356 6.88204 7.39503 8.92721 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.003767 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.330704 B = 7431.919913 C = 7937.614015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.249 3.751 3 C -0.160 4.160 4 C 0.301 3.699 5 N -0.462 5.462 6 C 0.038 3.962 7 C -0.258 4.258 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.480 5.480 11 C 0.087 3.913 12 C -0.121 4.121 13 C -0.094 4.094 14 C 0.021 3.979 15 C -0.541 4.541 16 H 0.064 0.936 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.278 1.278 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.176 0.824 27 H 0.167 0.833 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.049 0.951 34 H -0.019 1.019 35 H -0.004 1.004 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 15.067 -13.889 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.130 3.870 3 C -0.169 4.169 4 C -0.013 4.013 5 N -0.140 5.140 6 C 0.016 3.984 7 C -0.279 4.279 8 C 0.307 3.693 9 O -0.466 6.466 10 N -0.185 5.185 11 C -0.033 4.033 12 C -0.159 4.159 13 C -0.132 4.132 14 C -0.016 4.016 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.789 3.211 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.203 1.203 23 H 0.124 0.876 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.193 0.807 27 H 0.185 0.815 28 H 0.155 0.845 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.068 0.932 34 H -0.001 1.001 35 H 0.014 0.986 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.272 15.803 -13.724 21.184 hybrid contribution 0.132 -1.348 0.715 1.531 sum 3.403 14.455 -13.009 19.742 Atomic orbital electron populations 1.21519 0.85511 1.06299 1.06885 1.21136 0.96268 0.84022 0.85533 1.15168 0.92692 0.85230 1.23770 1.24852 0.92463 0.91986 0.92045 1.81349 1.08930 1.11606 1.12099 1.21516 0.90908 0.99773 0.86187 1.21988 1.02176 0.89919 1.13822 1.17853 0.80985 0.92006 0.78413 1.90969 1.68583 1.33478 1.53594 1.45452 1.08441 1.07884 1.56771 1.22332 0.98498 0.83737 0.98746 1.21808 1.00151 0.98513 0.95434 1.21351 0.99517 0.94828 0.97470 1.19030 0.94430 0.95038 0.93104 1.21776 1.35114 1.08184 0.92782 0.91760 1.26005 0.97189 1.01553 0.95342 1.70114 1.48102 1.41321 0.98073 0.85406 0.78127 0.78854 0.78717 1.18258 1.20822 1.20333 0.87596 0.88876 0.85622 0.80664 0.81507 0.84548 0.88786 0.94237 0.90804 0.90712 0.93180 1.00109 0.98571 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.45 71.23 0.60 -0.91 16 2 C 0.25 3.80 6.70 42.06 0.28 4.08 16 3 C -0.16 -2.31 5.74 -21.26 -0.12 -2.43 16 4 C 0.30 5.03 13.49 88.33 1.19 6.22 16 5 N -0.46 -9.96 18.54 19.01 0.35 -9.61 16 6 C 0.04 0.49 9.83 22.58 0.22 0.71 16 7 C -0.26 -4.67 9.96 22.36 0.22 -4.45 16 8 C 0.50 12.97 7.39 84.88 0.63 13.60 16 9 O -0.58 -20.55 16.62 -5.27 -0.09 -20.63 16 10 N -0.48 -9.97 2.56 -634.97 -1.62 -11.59 16 11 C 0.09 1.89 4.77 86.37 0.41 2.30 16 12 C -0.12 -3.62 5.48 30.59 0.17 -3.45 16 13 C -0.09 -3.45 5.15 30.60 0.16 -3.30 16 14 C 0.02 1.08 4.97 29.85 0.15 1.23 16 15 C -0.54 -30.13 9.11 25.60 0.23 -29.89 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 18 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 19 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H 0.11 1.17 7.06 -2.39 -0.02 1.15 16 24 H 0.09 0.97 6.42 -2.39 -0.02 0.96 16 25 H 0.13 0.72 7.62 -2.39 -0.02 0.70 16 26 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 27 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.14 1.86 6.41 -2.39 -0.02 1.84 16 29 H 0.09 2.34 7.43 -2.39 -0.02 2.32 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 2.03 7.32 -2.39 -0.02 2.01 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -74.76 313.51 6.64 -68.12 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.08 Total: 0.60 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.61 Total: -16.02 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -0.99 Total: -77.85 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.09 Total: -20.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.76 6.64 -68.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385239533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.847 kcal (2) G-P(sol) polarization free energy of solvation -74.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds