Wall clock time and date at job start Mon Mar 30 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47213 * 270.00192 * 3 2 1 5 5 H 1.48501 * 109.47296 * 29.99485 * 3 2 1 6 6 H 1.48494 * 109.47550 * 150.00118 * 3 2 1 7 7 C 1.37881 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99457 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99895 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46725 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99630 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46857 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46821 * 179.97438 * 12 11 10 14 14 C 1.36791 * 125.08085 * 264.97335 * 13 12 11 15 15 C 1.34243 * 109.93893 * 180.02562 * 14 13 12 16 16 C 1.46494 * 107.03344 * 0.02562 * 15 14 13 17 17 C 1.39661 * 133.92474 * 180.02562 * 16 15 14 18 18 C 1.38207 * 119.58872 * 179.97438 * 17 16 15 19 19 N 1.39966 * 119.88735 * 180.02562 * 18 17 16 20 20 C 1.39422 * 120.22695 * 0.02562 * 18 17 16 21 21 C 1.37660 * 120.60391 * 0.25685 * 20 18 17 22 22 C 1.37945 * 125.07482 * 85.00214 * 13 12 11 23 23 H 0.97004 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47038 * 60.00372 * 9 7 2 25 25 H 1.08996 * 109.46964 * 299.99654 * 9 7 2 26 26 H 1.08998 * 109.47598 * 59.99562 * 11 10 9 27 27 H 1.09001 * 109.46898 * 299.99318 * 11 10 9 28 28 H 1.09001 * 109.47356 * 60.00043 * 12 11 10 29 29 H 1.09001 * 109.46968 * 299.99468 * 12 11 10 30 30 H 1.07995 * 125.02558 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.48261 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.21122 * 0.02562 * 17 16 15 33 33 H 0.97000 * 120.00346 * 0.02562 * 19 18 17 34 34 H 0.97000 * 119.99978 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.70349 * 179.97438 * 20 18 17 36 36 H 1.07993 * 119.99051 * 179.70543 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0179 -7.2788 0.0048 14 6 1.7687 -8.0299 1.1206 15 6 1.1840 -9.1871 0.7723 16 6 1.0478 -9.1770 -0.6863 17 6 0.5277 -10.0791 -1.6170 18 6 0.5490 -9.7606 -2.9617 19 7 0.0289 -10.6598 -3.8997 20 6 1.0866 -8.5466 -3.3870 21 6 1.6068 -7.6535 -2.4776 22 6 1.5877 -7.9529 -1.1192 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 0.9451 -4.9830 -0.8868 27 1 0.9447 -4.9819 0.8932 28 1 3.2682 -5.8488 0.8935 29 1 3.2680 -5.8496 -0.8865 30 1 2.0071 -7.7355 2.1319 31 1 0.8729 -9.9761 1.4409 32 1 0.1107 -11.0195 -1.2880 33 1 -0.3459 -11.5048 -3.6057 34 1 0.0434 -10.4381 -4.8440 35 1 1.0993 -8.3064 -4.4399 36 1 2.0251 -6.7181 -2.8184 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385359383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:28 Heat of formation + Delta-G solvation = 9.982782 kcal Electronic energy + Delta-G solvation = -18212.011146 eV Core-core repulsion = 15275.393450 eV Total energy + Delta-G solvation = -2936.617696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11382 -37.78234 -36.82015 -33.62929 -33.10907 -32.54805 -29.88543 -28.30802 -27.60363 -26.40849 -23.01246 -22.50351 -22.27384 -21.10922 -19.97358 -17.34106 -16.78948 -16.51795 -16.46175 -15.55154 -15.16140 -15.10655 -14.83057 -14.18361 -13.77823 -13.46000 -13.32093 -12.96897 -12.67990 -12.48755 -12.39059 -12.23008 -11.84809 -11.13871 -10.91819 -10.81436 -10.77247 -10.71841 -10.15608 -9.92932 -9.28858 -9.19053 -8.94114 -8.28546 -7.74741 -7.00094 -6.16413 -4.19222 1.23356 1.90199 2.83510 2.96020 3.27082 3.32237 3.37360 3.88199 4.06594 4.30358 4.69992 4.81304 4.97309 5.02024 5.13234 5.20002 5.44902 5.51413 5.57357 5.66577 5.68993 5.79033 5.98637 6.04819 6.11842 6.17367 6.39622 6.42661 6.76077 6.95112 7.00450 7.28390 7.33674 7.48266 7.58273 7.72096 7.76963 8.06040 8.43775 8.92590 9.45772 10.94985 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.003521 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.038793 B = 7950.568450 C = 8446.802967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.198 3.802 10 O -0.395 6.395 11 C 0.050 3.950 12 C 0.113 3.887 13 N -0.477 5.477 14 C 0.068 3.932 15 C -0.227 4.227 16 C -0.060 4.060 17 C -0.167 4.167 18 C 0.186 3.814 19 N -0.887 5.887 20 C -0.167 4.167 21 C -0.077 4.077 22 C 0.053 3.947 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.122 0.878 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -20.437 -3.467 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.123 3.877 10 O -0.314 6.314 11 C -0.029 4.029 12 C -0.008 4.008 13 N -0.161 5.161 14 C -0.059 4.059 15 C -0.253 4.253 16 C -0.066 4.066 17 C -0.191 4.191 18 C 0.083 3.917 19 N -0.428 5.428 20 C -0.189 4.189 21 C -0.098 4.098 22 C -0.052 4.052 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.134 0.866 33 H 0.221 0.779 34 H 0.222 0.778 35 H 0.140 0.860 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.676 -19.882 -3.418 20.243 hybrid contribution -0.211 0.719 -0.210 0.778 sum 1.466 -19.163 -3.628 19.558 Atomic orbital electron populations 1.69964 1.06144 1.27314 1.50172 1.24963 0.95000 0.99511 0.94997 0.86305 0.79633 0.82084 0.78292 1.20390 1.21015 1.19578 1.21036 0.94091 0.89211 1.51329 0.91439 1.20245 0.88642 0.83139 0.95627 1.87791 1.35753 1.12572 1.95317 1.22509 0.94512 0.85653 1.00226 1.21582 0.95219 0.79055 1.04987 1.43915 1.52044 1.15505 1.04682 1.21848 1.00751 0.91984 0.91326 1.21533 1.11206 0.99686 0.92856 1.18885 1.00732 0.93621 0.93324 1.19692 1.08728 1.00534 0.90154 1.17428 0.95069 0.90108 0.89089 1.42349 1.71410 1.21425 1.07584 1.20255 1.05589 0.94051 0.99033 1.19880 1.00908 0.99686 0.89344 1.18130 1.04829 0.93869 0.88402 0.92535 0.97521 0.97543 0.93939 0.93935 0.88601 0.89086 0.81671 0.84005 0.86626 0.77867 0.77847 0.86049 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -15.18 9.43 -34.44 -0.32 -15.51 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.42 5.69 36.00 0.20 5.63 16 10 O -0.40 -9.38 10.33 -35.23 -0.36 -9.74 16 11 C 0.05 0.93 6.26 37.16 0.23 1.16 16 12 C 0.11 1.69 6.37 -4.04 -0.03 1.66 16 13 N -0.48 -6.92 2.78 -114.38 -0.32 -7.24 16 14 C 0.07 0.86 11.27 -16.75 -0.19 0.67 16 15 C -0.23 -2.90 11.08 -37.67 -0.42 -3.32 16 16 C -0.06 -0.87 6.37 -105.14 -0.67 -1.54 16 17 C -0.17 -2.12 9.94 -39.06 -0.39 -2.50 16 18 C 0.19 2.19 6.75 -83.71 -0.56 1.63 16 19 N -0.89 -7.30 9.10 32.43 0.30 -7.00 16 20 C -0.17 -2.06 9.86 -39.35 -0.39 -2.45 16 21 C -0.08 -1.08 9.97 -39.47 -0.39 -1.48 16 22 C 0.05 0.80 6.81 -83.89 -0.57 0.22 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.28 8.12 -51.93 -0.42 0.86 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.39 2.54 8.84 -40.82 -0.36 2.18 16 34 H 0.39 2.54 8.84 -40.82 -0.36 2.18 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -32.72 314.54 -8.44 -41.16 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.92 Total: 1.79 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.59 Total: -14.27 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.71 Total: -40.31 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.72 -8.44 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385359383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds