Wall clock time and date at job start Mon Mar 30 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47213 * 270.00192 * 3 2 1 5 5 H 1.48501 * 109.47296 * 29.99485 * 3 2 1 6 6 H 1.48494 * 109.47550 * 150.00118 * 3 2 1 7 7 C 1.37881 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99457 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99895 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46725 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99630 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46857 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46821 * 179.97438 * 12 11 10 14 14 C 1.36791 * 125.08085 * 264.97335 * 13 12 11 15 15 C 1.34243 * 109.93893 * 180.02562 * 14 13 12 16 16 C 1.46494 * 107.03344 * 0.02562 * 15 14 13 17 17 C 1.39661 * 133.92474 * 180.02562 * 16 15 14 18 18 C 1.38207 * 119.58872 * 179.97438 * 17 16 15 19 19 N 1.39966 * 119.88735 * 180.02562 * 18 17 16 20 20 C 1.39422 * 120.22695 * 0.02562 * 18 17 16 21 21 C 1.37660 * 120.60391 * 0.25685 * 20 18 17 22 22 C 1.37945 * 125.07482 * 85.00214 * 13 12 11 23 23 H 0.97004 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47038 * 60.00372 * 9 7 2 25 25 H 1.08996 * 109.46964 * 299.99654 * 9 7 2 26 26 H 1.08998 * 109.47598 * 59.99562 * 11 10 9 27 27 H 1.09001 * 109.46898 * 299.99318 * 11 10 9 28 28 H 1.09001 * 109.47356 * 60.00043 * 12 11 10 29 29 H 1.09001 * 109.46968 * 299.99468 * 12 11 10 30 30 H 1.07995 * 125.02558 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.48261 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.21122 * 0.02562 * 17 16 15 33 33 H 0.97000 * 120.00346 * 0.02562 * 19 18 17 34 34 H 0.97000 * 119.99978 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.70349 * 179.97438 * 20 18 17 36 36 H 1.07993 * 119.99051 * 179.70543 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0179 -7.2788 0.0048 14 6 1.7687 -8.0299 1.1206 15 6 1.1840 -9.1871 0.7723 16 6 1.0478 -9.1770 -0.6863 17 6 0.5277 -10.0791 -1.6170 18 6 0.5490 -9.7606 -2.9617 19 7 0.0289 -10.6598 -3.8997 20 6 1.0866 -8.5466 -3.3870 21 6 1.6068 -7.6535 -2.4776 22 6 1.5877 -7.9529 -1.1192 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 0.9451 -4.9830 -0.8868 27 1 0.9447 -4.9819 0.8932 28 1 3.2682 -5.8488 0.8935 29 1 3.2680 -5.8496 -0.8865 30 1 2.0071 -7.7355 2.1319 31 1 0.8729 -9.9761 1.4409 32 1 0.1107 -11.0195 -1.2880 33 1 -0.3459 -11.5048 -3.6057 34 1 0.0434 -10.4381 -4.8440 35 1 1.0993 -8.3064 -4.4399 36 1 2.0251 -6.7181 -2.8184 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385359383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:28 Heat of formation + Delta-G solvation = -10.604271 kcal Electronic energy + Delta-G solvation = -18212.903868 eV Core-core repulsion = 15275.393450 eV Total energy + Delta-G solvation = -2937.510418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12345 -38.98491 -38.39955 -35.15204 -34.44372 -33.93775 -31.09215 -29.66151 -28.99821 -27.85526 -24.65131 -24.10197 -23.52400 -22.09177 -21.00580 -18.73496 -18.35438 -17.79560 -17.44462 -17.10238 -16.78040 -16.54118 -16.10875 -15.76503 -14.93968 -14.88929 -14.44640 -14.24081 -13.98851 -13.77812 -13.49001 -13.26650 -13.25127 -12.94224 -12.85131 -12.46132 -12.39975 -12.04722 -11.71641 -11.36728 -10.96448 -10.86657 -10.37991 -10.28782 -8.73133 -8.35983 -7.92650 -6.49680 0.24197 0.89324 1.39677 1.42669 1.54648 1.76695 1.92547 2.33853 2.98216 3.04820 3.12524 3.20145 3.69395 3.84245 4.03197 4.10914 4.17414 4.25161 4.39256 4.50419 4.62168 4.66528 4.80374 4.81259 4.87264 5.07476 5.09103 5.20021 5.43590 5.47707 5.50094 5.82352 5.88011 5.97109 6.30271 6.37957 6.48688 6.71484 6.74665 7.15735 7.22207 8.76526 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.003521 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.038793 B = 7950.568450 C = 8446.802967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.211 3.789 10 O -0.402 6.402 11 C 0.049 3.951 12 C 0.128 3.872 13 N -0.486 5.486 14 C 0.059 3.941 15 C -0.231 4.231 16 C -0.080 4.080 17 C -0.179 4.179 18 C 0.187 3.813 19 N -0.873 5.873 20 C -0.172 4.172 21 C -0.097 4.097 22 C 0.021 3.979 23 H 0.272 0.728 24 H -0.015 1.015 25 H -0.012 1.012 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.194 0.806 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.405 0.595 34 H 0.405 0.595 35 H 0.141 0.859 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -20.968 -3.531 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.085 0.915 9 C 0.136 3.864 10 O -0.321 6.321 11 C -0.029 4.029 12 C 0.005 3.995 13 N -0.171 5.171 14 C -0.066 4.066 15 C -0.257 4.257 16 C -0.085 4.085 17 C -0.203 4.203 18 C 0.083 3.917 19 N -0.415 5.415 20 C -0.194 4.194 21 C -0.118 4.118 22 C -0.083 4.083 23 H 0.081 0.919 24 H 0.003 0.997 25 H 0.006 0.994 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.211 0.789 31 H 0.183 0.817 32 H 0.152 0.848 33 H 0.234 0.766 34 H 0.234 0.766 35 H 0.159 0.841 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.255 -20.475 -3.504 20.895 hybrid contribution -0.484 0.731 -0.255 0.913 sum 1.771 -19.744 -3.759 20.176 Atomic orbital electron populations 1.70077 1.07899 1.28832 1.50188 1.26017 0.95977 1.03573 0.93712 0.85125 0.78383 0.76668 0.78897 1.19245 1.19945 1.18580 1.21387 0.94317 0.90504 1.52703 0.91500 1.19874 0.88551 0.84384 0.93611 1.87739 1.35392 1.13744 1.95254 1.22714 0.96015 0.84495 0.99686 1.21386 0.93756 0.78236 1.06078 1.43932 1.52785 1.15173 1.05249 1.22394 1.00403 0.91829 0.92012 1.21896 1.10848 1.00355 0.92559 1.19284 1.00979 0.93756 0.94487 1.19960 1.08868 1.01119 0.90398 1.17548 0.94346 0.90303 0.89535 1.42311 1.70311 1.21184 1.07675 1.20532 1.04990 0.94044 0.99832 1.20047 1.01888 1.00204 0.89616 1.18459 1.06137 0.94777 0.88947 0.91930 0.99735 0.99449 0.94976 0.93908 0.86699 0.88838 0.78919 0.81678 0.84799 0.76597 0.76622 0.84078 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.99 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.55 -32.78 9.43 25.60 0.24 -32.54 16 8 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 9 C 0.21 11.97 5.69 71.24 0.41 12.37 16 10 O -0.40 -19.54 10.33 -148.98 -1.54 -21.07 16 11 C 0.05 1.88 6.26 71.98 0.45 2.34 16 12 C 0.13 3.78 6.37 86.38 0.55 4.33 16 13 N -0.49 -13.97 2.78 -515.78 -1.44 -15.41 16 14 C 0.06 1.43 11.27 83.01 0.94 2.37 16 15 C -0.23 -5.62 11.08 23.51 0.26 -5.35 16 16 C -0.08 -2.24 6.37 -20.20 -0.13 -2.37 16 17 C -0.18 -4.33 9.94 22.61 0.22 -4.10 16 18 C 0.19 4.16 6.75 38.12 0.26 4.42 16 19 N -0.87 -12.48 9.10 -51.30 -0.47 -12.94 16 20 C -0.17 -4.12 9.86 22.42 0.22 -3.90 16 21 C -0.10 -2.75 9.97 22.34 0.22 -2.52 16 22 C 0.02 0.64 6.81 38.97 0.27 0.91 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 24 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 2.95 8.12 -2.39 -0.02 2.93 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.40 4.24 8.84 -92.71 -0.82 3.42 16 34 H 0.40 4.29 8.84 -92.71 -0.82 3.47 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.61 314.54 2.69 -67.92 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.55 Total: 14.60 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.37 Total: -23.25 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.62 Total: -84.20 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.54 Total: -21.07 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.61 2.69 -67.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385359383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.316 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds