Wall clock time and date at job start Mon Mar 30 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00231 * 2 1 4 4 H 1.48497 * 109.47294 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47189 * 300.00046 * 3 2 1 6 6 H 1.48497 * 109.47242 * 60.00015 * 3 2 1 7 7 C 1.37884 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00071 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46848 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99962 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47063 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46733 * 179.97438 * 12 11 10 14 14 C 1.36746 * 125.08293 * 99.20654 * 13 12 11 15 15 C 1.34270 * 109.90307 * 179.84682 * 14 13 12 16 16 C 1.46467 * 107.01540 * 0.39995 * 15 14 13 17 17 C 1.39829 * 133.97597 * 179.75680 * 16 15 14 18 18 C 1.36599 * 119.90395 * 179.97438 * 17 16 15 19 19 C 1.38796 * 120.58900 * 359.97438 * 18 17 16 20 20 C 1.38373 * 120.57196 * 359.97438 * 19 18 17 21 21 N 1.39834 * 120.17046 * 180.02562 * 20 19 18 22 22 C 1.37837 * 125.08153 * 279.50714 * 13 12 11 23 23 H 0.96995 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47221 * 60.01063 * 9 7 2 25 25 H 1.08992 * 109.47620 * 300.00155 * 9 7 2 26 26 H 1.09004 * 109.46812 * 299.99446 * 11 10 9 27 27 H 1.08993 * 109.47386 * 59.99457 * 11 10 9 28 28 H 1.08994 * 109.46797 * 299.99383 * 12 11 10 29 29 H 1.08996 * 109.46806 * 59.99653 * 12 11 10 30 30 H 1.08006 * 125.04323 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.49239 * 180.15704 * 15 14 13 32 32 H 1.07995 * 120.04871 * 359.97438 * 17 16 15 33 33 H 1.07992 * 119.70271 * 180.02562 * 18 17 16 34 34 H 1.07996 * 119.71506 * 179.97438 * 19 18 17 35 35 H 0.96997 * 120.00376 * 187.23296 * 21 20 19 36 36 H 0.97001 * 120.00019 * 7.23987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 2.0177 -7.2788 -0.0004 14 6 1.8418 -8.0656 -1.1049 15 6 1.2364 -9.2126 -0.7573 16 6 0.9976 -9.1508 0.6864 17 6 0.4112 -10.0200 1.6116 18 6 0.3369 -9.6638 2.9283 19 6 0.8395 -8.4440 3.3595 20 6 1.4252 -7.5676 2.4631 21 7 1.9292 -6.3411 2.9068 22 6 1.5083 -7.9136 1.1120 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5568 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 0.9445 -4.9827 0.8887 27 1 0.9450 -4.9822 -0.8912 28 1 3.2685 -5.8492 -0.8900 29 1 3.2673 -5.8493 0.8900 30 1 2.1472 -7.8045 -2.1074 31 1 0.9719 -10.0251 -1.4179 32 1 0.0177 -10.9714 1.2857 33 1 -0.1162 -10.3378 3.6401 34 1 0.7729 -8.1766 4.4037 35 1 2.2433 -5.6851 2.2651 36 1 1.9649 -6.1463 3.8564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385365366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:30 Heat of formation + Delta-G solvation = 13.227335 kcal Electronic energy + Delta-G solvation = -18690.207547 eV Core-core repulsion = 15753.730546 eV Total energy + Delta-G solvation = -2936.477002 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29637 -37.41661 -36.94669 -34.84318 -32.94599 -32.03744 -29.25484 -28.89478 -27.71926 -26.47593 -23.05715 -22.42233 -22.20397 -21.58115 -19.90999 -17.30845 -16.75303 -16.57408 -16.48212 -15.52883 -15.34765 -14.99742 -14.93234 -14.39852 -14.25607 -13.48246 -13.29072 -12.96068 -12.70933 -12.36327 -12.34652 -11.76382 -11.51229 -11.23551 -11.08118 -10.94892 -10.91811 -10.83788 -10.48040 -10.17671 -9.25447 -9.03781 -8.69373 -8.36637 -8.08470 -6.90025 -6.21947 -4.25182 1.41804 1.79137 2.77086 2.87729 3.22034 3.28911 3.34640 3.94614 4.10182 4.24312 4.56388 4.74665 4.87186 4.93955 5.12531 5.14677 5.36681 5.42043 5.50905 5.58810 5.71171 5.81673 5.91201 5.95312 6.02872 6.11562 6.42385 6.74342 6.89647 6.91865 6.95269 7.21869 7.25547 7.36537 7.62626 7.65921 7.82373 7.98733 8.33927 8.86412 9.40164 10.89408 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.003983 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.316687 B = 7027.525323 C = 7447.925607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.197 3.803 10 O -0.394 6.394 11 C 0.044 3.956 12 C 0.106 3.894 13 N -0.472 5.472 14 C 0.061 3.939 15 C -0.219 4.219 16 C -0.066 4.066 17 C -0.138 4.138 18 C -0.094 4.094 19 C -0.205 4.205 20 C 0.224 3.776 21 N -0.886 5.886 22 C 0.034 3.966 23 H 0.265 0.735 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.145 0.855 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.399 0.601 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -17.620 2.513 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.123 3.877 10 O -0.313 6.313 11 C -0.035 4.035 12 C -0.016 4.016 13 N -0.156 5.156 14 C -0.066 4.066 15 C -0.244 4.244 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.114 4.114 19 C -0.230 4.230 20 C 0.118 3.882 21 N -0.429 5.429 22 C -0.073 4.073 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.231 0.769 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.753 -17.138 2.471 17.533 hybrid contribution 0.078 1.348 0.073 1.352 sum 2.831 -15.790 2.544 16.242 Atomic orbital electron populations 1.69971 1.06154 1.27291 1.50056 1.24966 0.94999 0.99545 0.94919 0.86251 0.79961 0.82376 0.77744 1.19430 1.20729 1.20742 1.21053 0.94115 0.89113 1.51469 0.91361 1.20274 0.88625 0.83068 0.95713 1.87803 1.35747 1.12423 1.95340 1.22611 0.94461 0.85799 1.00649 1.21708 0.95381 0.79442 1.05056 1.43808 1.50714 1.15244 1.05800 1.21844 1.01829 0.91613 0.91341 1.21593 1.09856 0.99573 0.93385 1.19018 1.01138 0.93404 0.93640 1.19964 1.04106 0.99514 0.92322 1.20287 0.99862 0.95892 0.95363 1.20169 1.08277 0.96267 0.98335 1.16914 0.95036 0.87232 0.89011 1.42900 1.72874 1.16532 1.10584 1.17891 1.06700 0.95250 0.87497 0.92532 0.97456 0.97500 0.93753 0.93484 0.87993 0.89335 0.81559 0.83754 0.86689 0.86505 0.86235 0.76886 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.88 9.43 -34.44 -0.32 -15.20 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.27 5.69 36.00 0.20 5.47 16 10 O -0.39 -8.95 10.33 -35.23 -0.36 -9.31 16 11 C 0.04 0.79 5.76 37.16 0.21 1.00 16 12 C 0.11 1.54 5.66 -4.04 -0.02 1.51 16 13 N -0.47 -6.76 2.78 -114.29 -0.32 -7.08 16 14 C 0.06 0.76 11.26 -16.76 -0.19 0.57 16 15 C -0.22 -2.76 11.08 -37.67 -0.42 -3.18 16 16 C -0.07 -0.96 6.37 -105.16 -0.67 -1.63 16 17 C -0.14 -1.78 10.05 -39.58 -0.40 -2.17 16 18 C -0.09 -1.14 9.97 -39.97 -0.40 -1.54 16 19 C -0.20 -2.65 9.87 -39.33 -0.39 -3.04 16 20 C 0.22 3.24 6.77 -83.61 -0.57 2.67 16 21 N -0.89 -11.79 8.93 32.50 0.29 -11.50 16 22 C 0.03 0.52 6.81 -83.78 -0.57 -0.05 16 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.83 7.17 -51.93 -0.37 0.45 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.09 1.24 6.40 -51.93 -0.33 0.91 16 30 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.40 5.72 4.30 -40.82 -0.18 5.54 16 36 H 0.40 4.37 8.85 -40.82 -0.36 4.01 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -31.61 306.03 -8.28 -39.88 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.59 Total: 6.81 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.62 Total: -14.06 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.71 Total: -44.24 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.36 Total: -9.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.61 -8.28 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385365366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.111 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds