Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00231 * 2 1 4 4 H 1.48497 * 109.47294 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47189 * 300.00046 * 3 2 1 6 6 H 1.48497 * 109.47242 * 60.00015 * 3 2 1 7 7 C 1.37884 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00071 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46848 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99962 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47063 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.46733 * 179.97438 * 12 11 10 14 14 C 1.36746 * 125.08293 * 99.20654 * 13 12 11 15 15 C 1.34270 * 109.90307 * 179.84682 * 14 13 12 16 16 C 1.46467 * 107.01540 * 0.39995 * 15 14 13 17 17 C 1.39829 * 133.97597 * 179.75680 * 16 15 14 18 18 C 1.36599 * 119.90395 * 179.97438 * 17 16 15 19 19 C 1.38796 * 120.58900 * 359.97438 * 18 17 16 20 20 C 1.38373 * 120.57196 * 359.97438 * 19 18 17 21 21 N 1.39834 * 120.17046 * 180.02562 * 20 19 18 22 22 C 1.37837 * 125.08153 * 279.50714 * 13 12 11 23 23 H 0.96995 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47221 * 60.01063 * 9 7 2 25 25 H 1.08992 * 109.47620 * 300.00155 * 9 7 2 26 26 H 1.09004 * 109.46812 * 299.99446 * 11 10 9 27 27 H 1.08993 * 109.47386 * 59.99457 * 11 10 9 28 28 H 1.08994 * 109.46797 * 299.99383 * 12 11 10 29 29 H 1.08996 * 109.46806 * 59.99653 * 12 11 10 30 30 H 1.08006 * 125.04323 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.49239 * 180.15704 * 15 14 13 32 32 H 1.07995 * 120.04871 * 359.97438 * 17 16 15 33 33 H 1.07992 * 119.70271 * 180.02562 * 18 17 16 34 34 H 1.07996 * 119.71506 * 179.97438 * 19 18 17 35 35 H 0.96997 * 120.00376 * 187.23296 * 21 20 19 36 36 H 0.97001 * 120.00019 * 7.23987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 2.0177 -7.2788 -0.0004 14 6 1.8418 -8.0656 -1.1049 15 6 1.2364 -9.2126 -0.7573 16 6 0.9976 -9.1508 0.6864 17 6 0.4112 -10.0200 1.6116 18 6 0.3369 -9.6638 2.9283 19 6 0.8395 -8.4440 3.3595 20 6 1.4252 -7.5676 2.4631 21 7 1.9292 -6.3411 2.9068 22 6 1.5083 -7.9136 1.1120 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5568 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 0.9445 -4.9827 0.8887 27 1 0.9450 -4.9822 -0.8912 28 1 3.2685 -5.8492 -0.8900 29 1 3.2673 -5.8493 0.8900 30 1 2.1472 -7.8045 -2.1074 31 1 0.9719 -10.0251 -1.4179 32 1 0.0177 -10.9714 1.2857 33 1 -0.1162 -10.3378 3.6401 34 1 0.7729 -8.1766 4.4037 35 1 2.2433 -5.6851 2.2651 36 1 1.9649 -6.1463 3.8564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385365366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -6.073557 kcal Electronic energy + Delta-G solvation = -18691.044497 eV Core-core repulsion = 15753.730546 eV Total energy + Delta-G solvation = -2937.313951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.31105 -38.94040 -38.17304 -35.98358 -34.98054 -33.27506 -30.52288 -29.91154 -29.34604 -27.93038 -24.67887 -24.18236 -23.23101 -22.62097 -20.93129 -18.76341 -18.40931 -17.84601 -17.61530 -17.11777 -16.63373 -16.59906 -16.20911 -15.85983 -15.39928 -14.97580 -14.60173 -14.16356 -14.02188 -13.76114 -13.43112 -13.13015 -12.96705 -12.92706 -12.61278 -12.47145 -12.28737 -12.07412 -12.03387 -11.50329 -11.36800 -10.98924 -10.42213 -9.71837 -9.10214 -8.37763 -7.91949 -6.51291 0.41239 0.77410 1.38944 1.40045 1.54390 1.68358 1.88554 2.31906 2.92507 2.96898 3.03187 3.13006 3.56449 3.78728 3.97563 4.02744 4.12619 4.18882 4.29964 4.51313 4.59653 4.65990 4.75949 4.80013 4.96301 5.04088 5.05342 5.16059 5.45759 5.48485 5.77758 5.85644 5.91454 5.98183 6.18690 6.33117 6.40737 6.58346 6.69153 6.84168 7.20741 8.74858 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.003983 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.316687 B = 7027.525323 C = 7447.925607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.211 3.789 10 O -0.398 6.398 11 C 0.046 3.954 12 C 0.119 3.881 13 N -0.480 5.480 14 C 0.053 3.947 15 C -0.223 4.223 16 C -0.088 4.088 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.210 4.210 20 C 0.200 3.800 21 N -0.887 5.887 22 C 0.003 3.997 23 H 0.272 0.728 24 H -0.013 1.013 25 H -0.014 1.014 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.197 0.803 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.393 0.607 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -18.096 2.372 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.136 3.864 10 O -0.317 6.317 11 C -0.033 4.033 12 C -0.003 4.003 13 N -0.164 5.164 14 C -0.072 4.072 15 C -0.247 4.247 16 C -0.094 4.094 17 C -0.167 4.167 18 C -0.116 4.116 19 C -0.236 4.236 20 C 0.095 3.905 21 N -0.430 5.430 22 C -0.104 4.104 23 H 0.080 0.920 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.214 0.786 31 H 0.187 0.813 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.223 0.777 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.439 -17.659 2.339 18.142 hybrid contribution -0.214 1.355 0.142 1.380 sum 3.225 -16.303 2.481 16.803 Atomic orbital electron populations 1.70082 1.07895 1.28761 1.50240 1.25993 0.95931 1.03522 0.93736 0.85094 0.78748 0.77081 0.78244 1.18506 1.19717 1.19752 1.21398 0.94326 0.90394 1.52587 0.91415 1.19884 0.88533 0.84322 0.93667 1.87752 1.35207 1.13458 1.95261 1.22770 0.95835 0.84670 1.00010 1.21538 0.94000 0.78573 1.06196 1.43841 1.51327 1.14999 1.06272 1.22433 1.01395 0.91344 0.92060 1.21972 1.09440 1.00357 0.92967 1.19483 1.01435 0.93535 0.94927 1.20320 1.03726 1.00190 0.92481 1.20671 0.99159 0.95914 0.95837 1.20523 1.07580 0.96381 0.99077 1.17217 0.96012 0.87866 0.89396 1.42866 1.73024 1.16237 1.10912 1.18263 1.07820 0.96174 0.88131 0.91957 0.99515 0.99624 0.94661 0.93792 0.86035 0.89040 0.78620 0.81286 0.84538 0.83638 0.84521 0.77678 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.99 43.31 29.54 68.60 2.03 45.33 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.88 9.43 25.60 0.24 -31.64 16 8 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 9 C 0.21 11.63 5.69 71.23 0.41 12.04 16 10 O -0.40 -18.43 10.33 -148.98 -1.54 -19.97 16 11 C 0.05 1.68 5.76 71.98 0.41 2.09 16 12 C 0.12 3.40 5.66 86.38 0.49 3.89 16 13 N -0.48 -13.47 2.78 -515.51 -1.44 -14.90 16 14 C 0.05 1.25 11.26 83.02 0.94 2.18 16 15 C -0.22 -5.25 11.08 23.51 0.26 -4.99 16 16 C -0.09 -2.46 6.37 -20.21 -0.13 -2.59 16 17 C -0.15 -3.54 10.05 22.27 0.22 -3.31 16 18 C -0.10 -2.17 9.97 22.02 0.22 -1.95 16 19 C -0.21 -5.26 9.87 22.44 0.22 -5.04 16 20 C 0.20 5.80 6.77 38.25 0.26 6.06 16 21 N -0.89 -23.98 8.93 -51.10 -0.46 -24.44 16 22 C 0.00 0.08 6.81 39.09 0.27 0.35 16 23 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 24 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.04 1.36 7.17 -2.39 -0.02 1.35 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.12 2.96 8.10 -2.39 -0.02 2.94 16 29 H 0.09 2.56 6.40 -2.39 -0.02 2.54 16 30 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.39 11.54 4.30 -92.71 -0.40 11.14 16 36 H 0.41 9.05 8.85 -92.71 -0.82 8.23 16 Total: -1.00 -68.06 306.03 3.03 -65.03 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.12 Total: 26.05 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.27 Total: -22.06 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -1.61 Total: -94.38 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.54 Total: -19.97 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.06 3.03 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385365366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.954 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds