Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39708 * 120.15223 * 154.71027 * 3 2 1 5 5 C 1.38434 * 119.82023 * 180.02562 * 4 3 2 6 6 N 1.39957 * 119.92393 * 180.02562 * 5 4 3 7 7 C 1.39096 * 120.14606 * 359.97438 * 5 4 3 8 8 C 1.38063 * 120.31693 * 359.71884 * 7 5 4 9 9 C 1.38616 * 120.17186 * 0.55971 * 8 7 5 10 10 O 1.35809 * 120.07179 * 179.71459 * 9 8 7 11 11 C 1.42895 * 116.99830 * 359.73192 * 10 9 8 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31505 * 119.99945 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47178 * 119.99393 * 19 17 15 22 22 H 1.48498 * 109.47163 * 239.99655 * 19 17 15 23 23 H 1.08000 * 120.08837 * 359.97438 * 4 3 2 24 24 H 0.96990 * 120.00154 * 0.02562 * 6 5 4 25 25 H 0.97005 * 119.99759 * 179.97438 * 6 5 4 26 26 H 1.07994 * 119.84332 * 180.02562 * 7 5 4 27 27 H 1.07998 * 119.91300 * 180.30046 * 8 7 5 28 28 H 1.09001 * 109.47626 * 59.99990 * 11 10 9 29 29 H 1.09001 * 109.47255 * 299.99731 * 11 10 9 30 30 H 1.09001 * 109.47002 * 299.99477 * 12 11 10 31 31 H 1.08993 * 109.46955 * 59.99914 * 12 11 10 32 32 H 1.09001 * 109.47289 * 299.99953 * 13 12 11 33 33 H 1.09004 * 109.47261 * 59.99697 * 13 12 11 34 34 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 35 35 H 1.08992 * 109.47534 * 59.99520 * 14 13 12 36 36 H 0.97007 * 119.99787 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 1.0932 -0.5161 5 6 4.6537 1.0864 -0.5131 6 7 5.3584 2.1800 -1.0291 7 6 5.3457 -0.0045 0.0024 8 6 4.6586 -1.0846 0.5197 9 6 3.2725 -1.0941 0.5181 10 8 2.5987 -2.1601 1.0221 11 6 3.3824 -3.2404 1.5327 12 6 2.4558 -4.3409 2.0538 13 6 3.2948 -5.4979 2.5999 14 6 2.3683 -6.5985 3.1204 15 6 3.1947 -7.7378 3.6589 16 1 4.2729 -7.6826 3.6322 17 6 2.5742 -8.8513 4.1847 18 7 1.2612 -8.9187 4.2167 19 14 3.5986 -10.2638 4.8516 20 1 5.0409 -9.9442 4.6998 21 1 3.2849 -10.4674 6.2887 22 1 3.2845 -11.5029 4.0960 23 1 2.7329 1.9405 -0.9170 24 1 4.8769 2.9416 -1.3878 25 1 6.3284 2.1764 -1.0272 26 1 6.4257 -0.0045 0.0027 27 1 5.2026 -1.9260 0.9227 28 1 4.0114 -2.8801 2.3467 29 1 4.0112 -3.6408 0.7375 30 1 1.8273 -3.9403 2.8492 31 1 1.8265 -4.7014 1.2401 32 1 3.9230 -5.8984 1.8043 33 1 3.9245 -5.1376 3.4135 34 1 1.7398 -6.1983 3.9159 35 1 1.7389 -6.9586 2.3066 36 1 0.8247 -9.7019 4.5870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385886866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -5.438684 kcal Electronic energy + Delta-G solvation = -17681.084224 eV Core-core repulsion = 14743.797803 eV Total energy + Delta-G solvation = -2937.286421 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45172 -38.19960 -36.54067 -34.92897 -33.95666 -32.39408 -31.59666 -29.25767 -27.92620 -25.18449 -24.26643 -22.65526 -21.39315 -20.23741 -19.18897 -17.79753 -17.35793 -16.23416 -16.18979 -15.97219 -15.33708 -14.49291 -14.48255 -14.42810 -13.87231 -13.59799 -13.17726 -12.92969 -12.90221 -12.57279 -12.35493 -11.94245 -11.90796 -11.65110 -11.14488 -11.02057 -10.66417 -10.54898 -10.46470 -9.99079 -9.71315 -9.36869 -9.29423 -9.06238 -8.35140 -7.52801 -5.99609 -4.02356 0.57205 1.27942 2.69827 2.90457 3.13679 3.31094 3.38532 3.42190 3.47795 3.74150 3.91501 4.45964 4.54749 4.70332 4.92606 5.14359 5.17154 5.24131 5.36237 5.45878 5.53948 5.66226 5.81000 5.98617 6.02058 6.03954 6.27989 6.37929 6.69457 6.84492 7.04044 7.09493 7.33815 7.40745 7.55101 7.68129 7.81750 8.00478 8.41963 9.05166 9.61773 11.11786 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.003034 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.775356 B = 9227.640890 C =10005.364904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.265 3.735 3 C -0.022 4.022 4 C -0.115 4.115 5 C 0.173 3.827 6 N -0.882 5.882 7 C -0.122 4.122 8 C -0.162 4.162 9 C 0.134 3.866 10 O -0.311 6.311 11 C 0.059 3.941 12 C -0.119 4.119 13 C -0.106 4.106 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.135 0.865 24 H 0.398 0.602 25 H 0.399 0.601 26 H 0.130 0.870 27 H 0.141 0.859 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 22.244 -10.507 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.050 4.050 3 C -0.027 4.027 4 C -0.141 4.141 5 C 0.070 3.930 6 N -0.423 5.423 7 C -0.145 4.145 8 C -0.181 4.181 9 C 0.084 3.916 10 O -0.224 6.224 11 C -0.015 4.015 12 C -0.156 4.156 13 C -0.144 4.144 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.152 0.848 24 H 0.226 0.774 25 H 0.227 0.773 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.725 22.019 -10.402 25.868 hybrid contribution 1.363 -0.645 0.304 1.538 sum 10.088 21.374 -10.098 25.701 Atomic orbital electron populations 1.81212 1.11993 1.07625 1.08686 1.25338 0.92341 0.93625 0.93714 1.14982 0.84415 0.95250 1.08017 1.20288 0.92024 0.97966 1.03774 1.17397 0.90572 0.88964 0.96075 1.42351 1.08735 1.19554 1.71696 1.20626 0.99912 0.92816 1.01179 1.21060 0.92257 1.00586 1.04234 1.18774 0.90353 0.87518 0.94986 1.86132 1.36377 1.26027 1.73870 1.23153 0.94937 0.85666 0.97776 1.21712 0.98593 0.94058 1.01267 1.21576 0.98682 0.94843 0.99257 1.19096 0.94470 0.91897 0.96209 1.21286 0.93071 1.01894 1.39689 0.92620 1.25042 0.94897 0.98546 0.96078 1.69977 1.07968 1.29415 1.46044 0.86541 0.80475 0.82357 0.78650 1.19739 1.21015 1.21021 0.84766 0.77411 0.77323 0.85203 0.84094 0.91841 0.91833 0.91284 0.91289 0.93096 0.93092 0.96466 0.96460 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.74 18.54 41.84 0.78 -5.97 16 2 C 0.27 3.67 14.86 -22.47 -0.33 3.34 16 3 C -0.02 -0.25 5.75 -106.72 -0.61 -0.86 16 4 C -0.12 -0.95 9.60 -38.96 -0.37 -1.33 16 5 C 0.17 1.22 6.75 -83.76 -0.57 0.66 16 6 N -0.88 -3.58 9.10 32.41 0.29 -3.28 16 7 C -0.12 -0.90 9.88 -39.33 -0.39 -1.28 16 8 C -0.16 -1.51 9.02 -39.51 -0.36 -1.86 16 9 C 0.13 1.60 6.69 -38.74 -0.26 1.34 16 10 O -0.31 -4.51 9.56 -19.14 -0.18 -4.69 16 11 C 0.06 0.80 4.74 37.16 0.18 0.97 16 12 C -0.12 -2.01 5.58 -26.73 -0.15 -2.16 16 13 C -0.11 -2.09 5.15 -26.73 -0.14 -2.23 16 14 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 24 H 0.40 1.03 8.84 -40.82 -0.36 0.67 16 25 H 0.40 0.96 8.84 -40.82 -0.36 0.60 16 26 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 27 H 0.14 1.15 6.29 -52.49 -0.33 0.82 16 28 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 29 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -33.12 319.21 -6.91 -40.02 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -4.77 Total: -4.49 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -3.55 Total: -16.58 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 1.81 Total: -35.70 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.18 Total: -4.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.12 -6.91 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385886866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.585 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds