Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39708 * 120.15223 * 154.71027 * 3 2 1 5 5 C 1.38434 * 119.82023 * 180.02562 * 4 3 2 6 6 N 1.39957 * 119.92393 * 180.02562 * 5 4 3 7 7 C 1.39096 * 120.14606 * 359.97438 * 5 4 3 8 8 C 1.38063 * 120.31693 * 359.71884 * 7 5 4 9 9 C 1.38616 * 120.17186 * 0.55971 * 8 7 5 10 10 O 1.35809 * 120.07179 * 179.71459 * 9 8 7 11 11 C 1.42895 * 116.99830 * 359.73192 * 10 9 8 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31505 * 119.99945 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47178 * 119.99393 * 19 17 15 22 22 H 1.48498 * 109.47163 * 239.99655 * 19 17 15 23 23 H 1.08000 * 120.08837 * 359.97438 * 4 3 2 24 24 H 0.96990 * 120.00154 * 0.02562 * 6 5 4 25 25 H 0.97005 * 119.99759 * 179.97438 * 6 5 4 26 26 H 1.07994 * 119.84332 * 180.02562 * 7 5 4 27 27 H 1.07998 * 119.91300 * 180.30046 * 8 7 5 28 28 H 1.09001 * 109.47626 * 59.99990 * 11 10 9 29 29 H 1.09001 * 109.47255 * 299.99731 * 11 10 9 30 30 H 1.09001 * 109.47002 * 299.99477 * 12 11 10 31 31 H 1.08993 * 109.46955 * 59.99914 * 12 11 10 32 32 H 1.09001 * 109.47289 * 299.99953 * 13 12 11 33 33 H 1.09004 * 109.47261 * 59.99697 * 13 12 11 34 34 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 35 35 H 1.08992 * 109.47534 * 59.99520 * 14 13 12 36 36 H 0.97007 * 119.99787 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 1.0932 -0.5161 5 6 4.6537 1.0864 -0.5131 6 7 5.3584 2.1800 -1.0291 7 6 5.3457 -0.0045 0.0024 8 6 4.6586 -1.0846 0.5197 9 6 3.2725 -1.0941 0.5181 10 8 2.5987 -2.1601 1.0221 11 6 3.3824 -3.2404 1.5327 12 6 2.4558 -4.3409 2.0538 13 6 3.2948 -5.4979 2.5999 14 6 2.3683 -6.5985 3.1204 15 6 3.1947 -7.7378 3.6589 16 1 4.2729 -7.6826 3.6322 17 6 2.5742 -8.8513 4.1847 18 7 1.2612 -8.9187 4.2167 19 14 3.5986 -10.2638 4.8516 20 1 5.0409 -9.9442 4.6998 21 1 3.2849 -10.4674 6.2887 22 1 3.2845 -11.5029 4.0960 23 1 2.7329 1.9405 -0.9170 24 1 4.8769 2.9416 -1.3878 25 1 6.3284 2.1764 -1.0272 26 1 6.4257 -0.0045 0.0027 27 1 5.2026 -1.9260 0.9227 28 1 4.0114 -2.8801 2.3467 29 1 4.0112 -3.6408 0.7375 30 1 1.8273 -3.9403 2.8492 31 1 1.8265 -4.7014 1.2401 32 1 3.9230 -5.8984 1.8043 33 1 3.9245 -5.1376 3.4135 34 1 1.7398 -6.1983 3.9159 35 1 1.7389 -6.9586 2.3066 36 1 0.8247 -9.7019 4.5870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385886866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -26.706411 kcal Electronic energy + Delta-G solvation = -17682.006462 eV Core-core repulsion = 14743.797803 eV Total energy + Delta-G solvation = -2938.208659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24777 -39.03166 -37.59103 -36.53998 -34.84104 -34.18960 -32.33179 -30.80424 -28.78629 -26.80210 -25.10131 -23.98866 -22.43679 -21.84601 -20.02641 -18.63098 -18.45573 -17.90135 -17.26925 -16.62603 -16.51693 -15.96865 -15.69705 -15.22564 -14.87034 -14.84046 -14.43333 -14.11121 -13.79279 -13.78286 -13.60337 -13.35992 -13.33633 -12.94152 -12.78409 -12.37865 -12.31110 -12.00254 -11.81189 -11.41709 -11.33270 -11.10694 -10.70225 -10.56006 -10.00319 -8.19482 -8.12984 -6.31140 -0.16187 0.58869 1.41270 1.41744 1.55219 1.65573 2.01389 2.21031 2.42714 2.82909 2.94929 3.14034 3.25603 3.86530 4.01241 4.01997 4.16826 4.26236 4.37773 4.50078 4.58926 4.65278 4.80566 4.87591 5.02204 5.11819 5.23240 5.26593 5.28058 5.37050 5.54299 5.62440 5.75495 5.86680 6.24253 6.36515 6.54213 6.69077 6.87452 7.14781 7.38673 8.92981 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.003034 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.775356 B = 9227.640890 C =10005.364904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.282 3.718 3 C -0.042 4.042 4 C -0.115 4.115 5 C 0.183 3.817 6 N -0.867 5.867 7 C -0.114 4.114 8 C -0.161 4.161 9 C 0.106 3.894 10 O -0.341 6.341 11 C 0.068 3.932 12 C -0.114 4.114 13 C -0.091 4.091 14 C 0.019 3.981 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.152 0.848 24 H 0.407 0.593 25 H 0.410 0.590 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H -0.013 1.013 35 H -0.012 1.012 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.600 23.399 -11.052 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.031 4.031 3 C -0.046 4.046 4 C -0.140 4.140 5 C 0.078 3.922 6 N -0.409 5.409 7 C -0.137 4.137 8 C -0.180 4.180 9 C 0.056 3.944 10 O -0.255 6.255 11 C -0.006 4.006 12 C -0.152 4.152 13 C -0.128 4.128 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.793 3.207 20 H -0.180 1.180 21 H -0.205 1.205 22 H -0.206 1.206 23 H 0.169 0.831 24 H 0.237 0.763 25 H 0.241 0.759 26 H 0.179 0.821 27 H 0.172 0.828 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.491 23.224 -10.970 28.560 hybrid contribution 0.273 -0.878 0.413 1.008 sum 12.764 22.345 -10.556 27.815 Atomic orbital electron populations 1.81204 1.13565 1.09480 1.10910 1.25896 0.92987 0.92077 0.92177 1.15200 0.82989 0.96586 1.09870 1.20450 0.92779 0.97484 1.03293 1.17488 0.90180 0.89589 0.94921 1.42373 1.09459 1.18789 1.70321 1.20978 1.01425 0.91805 0.99477 1.21230 0.90998 1.01683 1.04072 1.18992 0.91553 0.87079 0.96746 1.86046 1.37605 1.27005 1.74837 1.22944 0.93751 0.84806 0.99068 1.21510 0.98655 0.94644 1.00348 1.21327 0.97759 0.93813 0.99950 1.19047 0.94803 0.93590 0.94381 1.21770 0.93856 1.02665 1.39506 0.91500 1.26073 0.96117 1.01802 0.96385 1.70128 1.10065 1.30492 1.47164 0.85347 0.79298 0.78304 0.77784 1.18007 1.20549 1.20561 0.83059 0.76306 0.75923 0.82101 0.82803 0.89869 0.89870 0.92734 0.92746 0.91779 0.91768 0.99410 0.99404 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.04 18.54 19.01 0.35 -15.69 16 2 C 0.28 8.08 14.86 88.33 1.31 9.39 16 3 C -0.04 -0.92 5.75 -21.22 -0.12 -1.04 16 4 C -0.11 -1.66 9.60 22.67 0.22 -1.44 16 5 C 0.18 1.94 6.75 38.10 0.26 2.20 16 6 N -0.87 -3.48 9.10 -51.37 -0.47 -3.94 16 7 C -0.11 -1.22 9.88 22.43 0.22 -0.99 16 8 C -0.16 -2.54 9.02 22.32 0.20 -2.34 16 9 C 0.11 2.42 6.69 22.82 0.15 2.57 16 10 O -0.34 -9.87 9.56 -91.41 -0.87 -10.75 16 11 C 0.07 1.77 4.74 71.98 0.34 2.11 16 12 C -0.11 -3.92 5.58 30.60 0.17 -3.75 16 13 C -0.09 -3.57 5.15 30.59 0.16 -3.42 16 14 C 0.02 1.01 4.97 29.85 0.15 1.16 16 15 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 17 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 18 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 19 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 24 H 0.41 0.54 8.84 -92.72 -0.82 -0.28 16 25 H 0.41 0.11 8.84 -92.70 -0.82 -0.71 16 26 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 27 H 0.15 1.97 6.29 -2.91 -0.02 1.96 16 28 H 0.08 1.80 7.65 -2.39 -0.02 1.78 16 29 H 0.08 1.80 7.67 -2.39 -0.02 1.78 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -74.66 319.21 4.55 -70.11 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -0.53 Total: -1.93 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.75 Total: -26.00 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: 0.17 Total: -77.81 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.87 Total: -10.75 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.66 4.55 -70.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385886866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.406 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds