Wall clock time and date at job start Mon Mar 30 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.33992 * 124.91876 * 89.72446 * 15 14 12 17 17 C 1.46668 * 106.10059 * 179.86567 * 16 15 14 18 18 C 1.39495 * 134.67303 * 180.09728 * 17 16 15 19 19 C 1.38294 * 117.99106 * 180.31574 * 18 17 16 20 20 C 1.38605 * 119.30848 * 0.02562 * 19 18 17 21 21 N 1.31639 * 121.60081 * 359.97438 * 20 19 18 22 22 C 1.32510 * 121.71138 * 0.02562 * 21 20 19 23 23 O 1.34458 * 124.91790 * 270.02371 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 29 29 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 30 30 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 31 31 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 32 32 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 33 33 H 1.08001 * 126.95109 * 359.97438 * 16 15 14 34 34 H 1.08003 * 121.00332 * 0.33813 * 18 17 16 35 35 H 1.08002 * 120.34440 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.20101 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9710 -1.4580 -4.3869 17 6 3.0142 -1.7498 -5.3758 18 6 3.1171 -2.6124 -6.4672 19 6 4.2997 -2.6136 -7.1842 20 6 5.3283 -1.7689 -6.7977 21 7 5.2077 -0.9633 -5.7636 22 6 4.0983 -0.9197 -5.0403 23 8 3.7279 -0.2021 -3.9610 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.9026 -0.5283 4.4376 28 1 0.3491 -1.9549 -1.3693 29 1 1.8134 -2.5258 -2.2045 30 1 1.7059 -2.6221 -0.4301 31 1 0.6815 0.1053 -2.6087 32 1 2.1026 1.1189 -2.2604 33 1 0.9919 -1.9094 -4.3236 34 1 2.2979 -3.2594 -6.7441 35 1 4.4207 -3.2667 -8.0359 36 1 6.2510 -1.7710 -7.3592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449022076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:27 Heat of formation + Delta-G solvation = 67.502101 kcal Electronic energy + Delta-G solvation = -19010.392141 eV Core-core repulsion = 16076.268670 eV Total energy + Delta-G solvation = -2934.123471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.56096 -39.00011 -37.59571 -33.66704 -32.79530 -31.46101 -30.84990 -29.09089 -27.15041 -25.35674 -24.38391 -23.51355 -22.13859 -21.20452 -19.45605 -18.02198 -16.91675 -16.65243 -16.38232 -16.24739 -15.34683 -14.58121 -14.27038 -14.04892 -13.71433 -13.32925 -13.23251 -13.03981 -12.93524 -12.60441 -12.29784 -12.14443 -11.61628 -11.34643 -11.20280 -10.95760 -10.76027 -10.37541 -10.09761 -9.59947 -9.51818 -9.15387 -9.06270 -8.63362 -8.39069 -7.52912 -6.10046 -4.09020 0.73564 1.06415 2.24855 2.37524 3.21853 3.31898 3.35555 3.64359 4.22125 4.35376 4.36255 4.69214 4.76075 4.80523 4.91265 5.17161 5.22923 5.31083 5.42302 5.55070 5.69997 5.87855 5.94165 5.97038 6.07564 6.16189 6.18073 6.25198 6.37967 6.42201 6.59491 6.79365 7.04560 7.10521 7.52502 7.73364 7.76532 7.90074 8.58305 8.97955 9.50724 11.03010 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.004312 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.234593 B = 6492.212772 C = 6571.071081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.182 3.818 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.024 3.976 14 C 0.115 3.885 15 C 0.085 3.915 16 C -0.212 4.212 17 C -0.170 4.170 18 C -0.030 4.030 19 C -0.196 4.196 20 C 0.135 3.865 21 N -0.472 5.472 22 C 0.255 3.745 23 O -0.173 6.173 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.023 0.977 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -2.154 -20.305 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.075 3.925 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.223 1.223 11 H -0.193 1.193 12 N -0.242 5.242 13 C -0.124 4.124 14 C -0.013 4.013 15 C 0.036 3.964 16 C -0.232 4.232 17 C -0.173 4.173 18 C -0.057 4.057 19 C -0.216 4.216 20 C -0.028 4.028 21 N -0.189 5.189 22 C 0.078 3.922 23 O -0.070 6.070 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.030 -1.416 -19.586 19.637 hybrid contribution -2.239 0.196 -0.102 2.250 sum -2.269 -1.220 -19.688 19.856 Atomic orbital electron populations 1.22863 1.01428 1.01337 0.99136 1.19844 0.88877 0.95388 0.88341 0.93916 1.20882 1.31724 1.13933 0.87589 0.89926 1.24905 0.95883 0.96579 0.95763 1.69874 1.45544 1.40257 0.97899 0.86895 0.80481 0.83881 0.77105 1.20733 1.22319 1.19299 1.62178 1.59106 1.02576 1.00346 1.22438 0.96406 0.91188 1.02347 1.20778 0.95641 0.98289 0.86625 1.22637 0.81187 0.96300 0.96281 1.22116 1.01029 1.02616 0.97465 1.20672 0.96373 1.01048 0.99206 1.20957 0.97683 0.95275 0.91738 1.21972 0.94566 1.02557 1.02516 1.22595 0.98830 0.90304 0.91054 1.66299 1.22721 1.23449 1.06431 1.19617 0.91296 0.92181 0.89063 1.83991 1.30181 1.54721 1.38097 0.92142 0.95245 0.93391 0.92549 0.95818 0.93058 0.89856 0.91265 0.88825 0.82235 0.84477 0.84077 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.85 7.92 37.16 0.29 -3.56 16 2 C 0.18 4.14 1.90 -68.87 -0.13 4.01 16 3 H 0.04 1.00 6.99 -51.93 -0.36 0.64 16 4 C -0.50 -13.78 8.55 -34.44 -0.29 -14.07 16 5 H 0.08 2.50 7.35 -52.49 -0.39 2.11 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.21 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.13 6.53 56.52 0.37 -5.77 16 12 N -0.52 -10.41 4.69 -237.73 -1.12 -11.53 16 13 C 0.02 0.44 8.56 60.06 0.51 0.96 16 14 C 0.11 1.87 5.04 -4.97 -0.03 1.85 16 15 C 0.09 1.36 6.18 -35.80 -0.22 1.14 16 16 C -0.21 -2.94 9.42 -37.67 -0.35 -3.30 16 17 C -0.17 -2.39 6.41 -105.13 -0.67 -3.06 16 18 C -0.03 -0.32 10.22 -39.09 -0.40 -0.72 16 19 C -0.20 -1.78 10.10 -39.43 -0.40 -2.18 16 20 C 0.13 1.45 11.14 -17.50 -0.19 1.25 16 21 N -0.47 -7.21 10.38 -12.97 -0.13 -7.34 16 22 C 0.25 4.21 8.58 -16.37 -0.14 4.07 16 23 O -0.17 -3.12 10.57 3.91 0.04 -3.07 16 24 H 0.06 1.20 6.33 -51.93 -0.33 0.87 16 25 H 0.03 0.50 6.91 -51.93 -0.36 0.14 16 26 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.39 6.21 -51.93 -0.32 0.07 16 29 H 0.05 0.84 6.05 -51.93 -0.31 0.52 16 30 H 0.08 1.71 6.86 -51.93 -0.36 1.36 16 31 H 0.07 0.98 7.06 -51.93 -0.37 0.61 16 32 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 33 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 289.46 15.07 4.36 4.36 Total: -1.00 -32.00 289.46 -6.59 -38.58 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.25 Total: -0.21 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.12 Total: -11.72 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.48 Total: -45.15 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.21 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.00 -6.59 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449022076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.086 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds