Wall clock time and date at job start Mon Mar 30 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.33992 * 124.91876 * 89.72446 * 15 14 12 17 17 C 1.46668 * 106.10059 * 179.86567 * 16 15 14 18 18 C 1.39495 * 134.67303 * 180.09728 * 17 16 15 19 19 C 1.38294 * 117.99106 * 180.31574 * 18 17 16 20 20 C 1.38605 * 119.30848 * 0.02562 * 19 18 17 21 21 N 1.31639 * 121.60081 * 359.97438 * 20 19 18 22 22 C 1.32510 * 121.71138 * 0.02562 * 21 20 19 23 23 O 1.34458 * 124.91790 * 270.02371 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 29 29 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 30 30 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 31 31 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 32 32 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 33 33 H 1.08001 * 126.95109 * 359.97438 * 16 15 14 34 34 H 1.08003 * 121.00332 * 0.33813 * 18 17 16 35 35 H 1.08002 * 120.34440 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.20101 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9710 -1.4580 -4.3869 17 6 3.0142 -1.7498 -5.3758 18 6 3.1171 -2.6124 -6.4672 19 6 4.2997 -2.6136 -7.1842 20 6 5.3283 -1.7689 -6.7977 21 7 5.2077 -0.9633 -5.7636 22 6 4.0983 -0.9197 -5.0403 23 8 3.7279 -0.2021 -3.9610 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.9026 -0.5283 4.4376 28 1 0.3491 -1.9549 -1.3693 29 1 1.8134 -2.5258 -2.2045 30 1 1.7059 -2.6221 -0.4301 31 1 0.6815 0.1053 -2.6087 32 1 2.1026 1.1189 -2.2604 33 1 0.9919 -1.9094 -4.3236 34 1 2.2979 -3.2594 -6.7441 35 1 4.4207 -3.2667 -8.0359 36 1 6.2510 -1.7710 -7.3592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449022076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:27 Heat of formation + Delta-G solvation = 42.446223 kcal Electronic energy + Delta-G solvation = -19011.478645 eV Core-core repulsion = 16076.268670 eV Total energy + Delta-G solvation = -2935.209976 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.61690 -39.98232 -39.11746 -35.06218 -34.35784 -32.69219 -32.08900 -30.49973 -28.39403 -27.22539 -25.76730 -24.57002 -23.23629 -22.32078 -21.13422 -19.04617 -18.72739 -17.90745 -17.57831 -17.13904 -16.91785 -16.16347 -15.73941 -15.41220 -14.77695 -14.70436 -14.56555 -14.15923 -14.01445 -13.94673 -13.76223 -13.36353 -13.17920 -13.00762 -12.70201 -12.52778 -12.11196 -11.90193 -11.73336 -11.43226 -11.12046 -10.75479 -10.45173 -9.96794 -9.48084 -9.00464 -8.27020 -6.30635 -0.18951 0.16502 1.21509 1.31065 1.34698 1.38090 1.47739 2.33101 2.74092 3.07086 3.15228 3.37743 3.42525 3.85692 4.00621 4.05772 4.20237 4.23394 4.39350 4.43921 4.53677 4.58650 4.59885 4.64407 4.66764 4.79256 4.99405 5.03829 5.14014 5.21797 5.30060 5.41991 5.54633 5.61879 5.97441 6.02158 6.32124 6.62163 6.75554 6.82400 7.33775 8.90165 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.004312 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.234593 B = 6492.212772 C = 6571.071081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.186 3.814 3 H 0.037 0.963 4 C -0.505 4.505 5 H 0.033 0.967 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.263 1.263 10 H -0.302 1.302 11 H -0.245 1.245 12 N -0.546 5.546 13 C 0.034 3.966 14 C 0.121 3.879 15 C 0.049 3.951 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.028 4.028 19 C -0.180 4.180 20 C 0.134 3.866 21 N -0.516 5.516 22 C 0.213 3.787 23 O -0.209 6.209 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.265 0.735 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -2.337 -23.824 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.078 3.922 3 H 0.055 0.945 4 C -0.543 4.543 5 H 0.052 0.948 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.230 1.230 11 H -0.169 1.169 12 N -0.270 5.270 13 C -0.114 4.114 14 C -0.006 4.006 15 C 0.001 3.999 16 C -0.209 4.209 17 C -0.191 4.191 18 C -0.054 4.054 19 C -0.199 4.199 20 C -0.028 4.028 21 N -0.234 5.234 22 C 0.039 3.961 23 O -0.108 6.108 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.206 0.794 34 H 0.191 0.809 35 H 0.206 0.794 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.888 -1.605 -23.142 23.275 hybrid contribution -1.466 0.088 0.775 1.661 sum -3.354 -1.517 -22.367 22.668 Atomic orbital electron populations 1.22711 0.98906 1.01947 1.00562 1.19605 0.90690 0.94329 0.87564 0.94526 1.21153 1.30536 1.12534 0.90117 0.94834 1.25803 0.97557 1.00089 0.95214 1.70048 1.47897 1.42648 0.98592 0.85807 0.79045 0.79827 0.77371 1.18939 1.22994 1.16921 1.61942 1.60317 1.03542 1.01198 1.22313 0.97617 0.90118 1.01372 1.20753 0.97413 0.97389 0.85057 1.22601 0.81327 0.98462 0.97484 1.22464 1.01663 1.00699 0.96062 1.20947 0.95605 1.01923 1.00671 1.21500 0.99315 0.94356 0.90197 1.22515 0.93022 1.01568 1.02810 1.23423 1.00750 0.89012 0.89601 1.66295 1.23261 1.25706 1.08156 1.20013 0.92888 0.93596 0.89626 1.83883 1.31356 1.56090 1.39446 0.92035 0.91187 0.94368 0.92577 0.93662 0.91257 0.93580 0.88264 0.89232 0.79441 0.80925 0.79387 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.97 7.92 71.98 0.57 -6.40 16 2 C 0.19 8.39 1.90 44.17 0.08 8.47 16 3 H 0.04 1.70 6.99 -2.39 -0.02 1.68 16 4 C -0.50 -28.75 8.55 25.60 0.22 -28.54 16 5 H 0.03 2.18 7.35 -2.91 -0.02 2.15 16 6 C 0.01 0.59 5.45 84.65 0.46 1.05 16 7 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 8 Si 0.95 44.09 24.37 68.60 1.67 45.76 16 9 H -0.26 -11.42 6.87 99.48 0.68 -10.74 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 11 H -0.25 -10.38 6.53 99.48 0.65 -9.73 16 12 N -0.55 -21.95 4.69 -906.04 -4.25 -26.20 16 13 C 0.03 1.21 8.56 127.69 1.09 2.31 16 14 C 0.12 3.81 5.04 85.56 0.43 4.24 16 15 C 0.05 1.56 6.18 24.72 0.15 1.72 16 16 C -0.19 -4.87 9.42 23.51 0.22 -4.65 16 17 C -0.19 -4.96 6.41 -20.20 -0.13 -5.09 16 18 C -0.03 -0.49 10.22 22.59 0.23 -0.25 16 19 C -0.18 -2.47 10.10 22.37 0.23 -2.25 16 20 C 0.13 2.52 11.14 84.81 0.95 3.47 16 21 N -0.52 -15.60 10.38 -308.17 -3.20 -18.80 16 22 C 0.21 7.10 8.58 85.17 0.73 7.83 16 23 O -0.21 -7.83 10.57 -8.91 -0.09 -7.92 16 24 H 0.06 2.31 6.33 -2.39 -0.02 2.30 16 25 H 0.07 2.10 6.91 -2.39 -0.02 2.09 16 26 H 0.04 1.53 3.27 -2.38 -0.01 1.52 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.05 1.42 6.21 -2.39 -0.01 1.40 16 29 H 0.07 2.21 6.05 -2.38 -0.01 2.20 16 30 H 0.05 1.98 6.86 -2.39 -0.02 1.96 16 31 H 0.10 2.47 7.06 -2.39 -0.02 2.46 16 32 H 0.09 2.82 7.93 -2.39 -0.02 2.80 16 33 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -75.88 289.46 0.68 -75.20 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.02 Total: 9.56 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.24 Total: -18.08 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -7.15 Total: -104.52 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.09 Total: -7.92 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.76 kcal Total: -75.88 0.68 -75.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449022076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.646 kcal (2) G-P(sol) polarization free energy of solvation -75.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds