Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 H 1.08993 * 109.47022 * 179.82633 * 3 2 1 5 5 C 1.50702 * 109.47312 * 299.82802 * 3 2 1 6 6 H 1.08000 * 120.00096 * 120.00086 * 5 3 2 7 7 C 1.37875 * 119.99875 * 300.00340 * 5 3 2 8 8 N 1.31515 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46875 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47503 * 119.99708 * 9 7 5 12 12 H 1.48501 * 109.46961 * 239.99996 * 9 7 5 13 13 N 1.46907 * 109.47043 * 59.82733 * 3 2 1 14 14 C 1.46903 * 110.99485 * 85.93234 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54348 * 14 13 3 16 16 C 1.33988 * 124.92113 * 89.99818 * 15 14 13 17 17 C 1.46668 * 106.09407 * 179.97438 * 16 15 14 18 18 C 1.39508 * 134.66562 * 180.02562 * 17 16 15 19 19 C 1.38298 * 117.98839 * 179.97438 * 18 17 16 20 20 C 1.38608 * 119.30785 * 0.07724 * 19 18 17 21 21 N 1.31639 * 121.59792 * 359.93115 * 20 19 18 22 22 C 1.32507 * 121.71372 * 0.03307 * 21 20 19 23 23 O 1.34462 * 124.91777 * 269.69234 * 15 14 13 24 24 H 1.09000 * 109.47161 * 55.58873 * 1 2 3 25 25 H 1.08996 * 109.47065 * 295.58794 * 1 2 3 26 26 H 1.09004 * 109.46616 * 175.58996 * 1 2 3 27 27 H 1.08998 * 109.47285 * 119.99998 * 2 1 3 28 28 H 1.08996 * 109.46947 * 240.00354 * 2 1 3 29 29 H 0.96995 * 120.00185 * 180.02562 * 8 7 5 30 30 H 1.00894 * 110.99534 * 209.87836 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.53513 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.54200 * 14 13 3 33 33 H 1.07995 * 126.95355 * 359.97438 * 16 15 14 34 34 H 1.07999 * 121.00504 * 359.97438 * 18 17 16 35 35 H 1.07995 * 120.34399 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.19774 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6346 0.6103 -2.6009 9 14 1.2600 2.5589 -4.0113 10 1 0.4338 3.7259 -3.6106 11 1 2.4175 3.0245 -4.8166 12 1 0.4370 1.6251 -4.8212 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9095 2.3420 15 6 1.9632 2.7219 3.5187 16 6 1.0911 2.2958 4.4423 17 6 0.9243 3.4056 5.3867 18 6 0.1735 3.6024 6.5459 19 6 0.2790 4.8227 7.1880 20 6 1.1152 5.7956 6.6631 21 7 1.8139 5.5865 5.5672 22 6 1.7528 4.4370 4.9109 23 8 2.3566 3.9772 3.7970 24 1 -0.3633 0.5808 -0.8478 25 1 -0.3633 0.4438 0.9268 26 1 -0.3633 -1.0247 -0.0790 27 1 1.8935 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.8717 0.2783 -3.4809 30 1 1.4287 3.1225 1.0208 31 1 2.4322 0.8516 2.6043 32 1 3.4527 2.2117 2.0781 33 1 0.6085 1.3305 4.4832 34 1 -0.4706 2.8254 6.9302 35 1 -0.2849 5.0159 8.0886 36 1 1.1959 6.7481 7.1658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449243879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = 42.100308 kcal Electronic energy + Delta-G solvation = -18700.883767 eV Core-core repulsion = 15765.658792 eV Total energy + Delta-G solvation = -2935.224976 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.52588 -38.95447 -36.46657 -33.68848 -32.85053 -31.40383 -31.00344 -29.42245 -26.78269 -24.87900 -23.55889 -23.18313 -22.19543 -21.15704 -19.13316 -18.00081 -17.04571 -16.39402 -16.36257 -16.05117 -15.00127 -14.34265 -14.23560 -13.68410 -13.65461 -13.28082 -13.01193 -12.98949 -12.63360 -12.48769 -12.16014 -11.65507 -11.58212 -10.98366 -10.86712 -10.70855 -10.45261 -10.16438 -9.81552 -9.52536 -9.45614 -9.05760 -8.86519 -8.53867 -8.33377 -7.43930 -6.07510 -4.13211 0.75648 1.07279 2.28608 2.42241 3.26552 3.35033 3.39250 3.65389 4.27277 4.36706 4.40937 4.70878 4.82840 4.93630 5.19786 5.23650 5.33961 5.39361 5.57341 5.76036 5.87399 5.94955 6.02011 6.32033 6.43075 6.47117 6.61301 6.78612 7.09860 7.15709 7.17590 7.39585 7.67264 7.70366 7.73841 7.76623 8.13957 8.25244 8.51233 8.93779 9.51926 10.98460 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.004180 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.247999 B = 6697.712520 C = 7064.080979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.131 3.869 15 C 0.067 3.933 16 C -0.193 4.193 17 C -0.170 4.170 18 C -0.029 4.029 19 C -0.196 4.196 20 C 0.134 3.866 21 N -0.474 5.474 22 C 0.253 3.747 23 O -0.183 6.183 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 3.680 17.041 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.023 0.977 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.311 5.311 14 C 0.001 3.999 15 C 0.019 3.981 16 C -0.214 4.214 17 C -0.174 4.174 18 C -0.056 4.056 19 C -0.216 4.216 20 C -0.029 4.029 21 N -0.191 5.191 22 C 0.077 3.923 23 O -0.081 6.081 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.171 3.796 16.485 17.211 hybrid contribution -0.195 0.283 -0.703 0.782 sum -3.366 4.079 15.782 16.645 Atomic orbital electron populations 1.21460 0.97402 0.97543 1.01411 1.21460 0.95154 0.97959 0.99663 1.19240 0.93287 0.91566 0.85125 0.97675 1.21185 1.31846 1.12079 0.90148 0.92124 1.24870 0.94944 0.94976 0.98956 1.69880 1.36520 1.22707 1.23553 0.86496 0.78613 0.79716 0.82951 1.19729 1.21070 1.20951 1.60932 1.47674 1.16726 1.05759 1.20692 0.95545 0.96737 0.86894 1.22846 0.96295 0.81264 0.97709 1.22125 1.03446 1.00255 0.95558 1.20737 1.01658 0.96384 0.98612 1.20980 0.95591 0.97104 0.91879 1.21973 1.02544 0.94598 1.02531 1.22582 0.91271 0.99233 0.89792 1.66291 1.24353 1.19956 1.08454 1.19590 0.93395 0.91203 0.88102 1.83957 1.57918 1.28921 1.37324 0.92435 0.93958 0.96655 0.97054 0.89276 0.92906 0.84556 0.87952 0.93597 0.81925 0.84397 0.84083 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 37.16 0.35 -2.25 16 2 C -0.10 -2.40 5.59 -26.73 -0.15 -2.55 16 3 C 0.21 5.12 2.30 -68.86 -0.16 4.96 16 4 H 0.01 0.15 7.71 -51.93 -0.40 -0.25 16 5 C -0.51 -13.49 7.26 -34.44 -0.25 -13.74 16 6 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.78 5.64 -109.22 -0.62 -14.39 16 14 C 0.13 2.24 6.04 -4.97 -0.03 2.21 16 15 C 0.07 1.10 6.70 -35.80 -0.24 0.86 16 16 C -0.19 -2.82 11.01 -37.67 -0.41 -3.24 16 17 C -0.17 -2.46 6.41 -105.14 -0.67 -3.13 16 18 C -0.03 -0.32 10.22 -39.09 -0.40 -0.72 16 19 C -0.20 -1.81 10.11 -39.42 -0.40 -2.21 16 20 C 0.13 1.44 11.14 -17.50 -0.19 1.25 16 21 N -0.47 -7.21 10.38 -12.98 -0.13 -7.35 16 22 C 0.25 4.19 8.58 -16.37 -0.14 4.05 16 23 O -0.18 -3.27 10.57 3.92 0.04 -3.23 16 24 H 0.06 1.35 7.07 -51.93 -0.37 0.98 16 25 H 0.04 0.86 7.74 -51.93 -0.40 0.46 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.01 0.23 7.60 -51.93 -0.39 -0.16 16 28 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.34 7.03 8.13 -39.29 -0.32 6.71 16 31 H 0.10 1.62 7.61 -51.93 -0.40 1.23 16 32 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -29.34 305.12 -7.95 -37.29 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.65 Total: 3.96 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.79 Total: -12.88 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.12 Total: -45.63 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.34 -7.95 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.390 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds