Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 H 1.08993 * 109.47022 * 179.82633 * 3 2 1 5 5 C 1.50702 * 109.47312 * 299.82802 * 3 2 1 6 6 H 1.08000 * 120.00096 * 120.00086 * 5 3 2 7 7 C 1.37875 * 119.99875 * 300.00340 * 5 3 2 8 8 N 1.31515 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46875 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47503 * 119.99708 * 9 7 5 12 12 H 1.48501 * 109.46961 * 239.99996 * 9 7 5 13 13 N 1.46907 * 109.47043 * 59.82733 * 3 2 1 14 14 C 1.46903 * 110.99485 * 85.93234 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54348 * 14 13 3 16 16 C 1.33988 * 124.92113 * 89.99818 * 15 14 13 17 17 C 1.46668 * 106.09407 * 179.97438 * 16 15 14 18 18 C 1.39508 * 134.66562 * 180.02562 * 17 16 15 19 19 C 1.38298 * 117.98839 * 179.97438 * 18 17 16 20 20 C 1.38608 * 119.30785 * 0.07724 * 19 18 17 21 21 N 1.31639 * 121.59792 * 359.93115 * 20 19 18 22 22 C 1.32507 * 121.71372 * 0.03307 * 21 20 19 23 23 O 1.34462 * 124.91777 * 269.69234 * 15 14 13 24 24 H 1.09000 * 109.47161 * 55.58873 * 1 2 3 25 25 H 1.08996 * 109.47065 * 295.58794 * 1 2 3 26 26 H 1.09004 * 109.46616 * 175.58996 * 1 2 3 27 27 H 1.08998 * 109.47285 * 119.99998 * 2 1 3 28 28 H 1.08996 * 109.46947 * 240.00354 * 2 1 3 29 29 H 0.96995 * 120.00185 * 180.02562 * 8 7 5 30 30 H 1.00894 * 110.99534 * 209.87836 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.53513 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.54200 * 14 13 3 33 33 H 1.07995 * 126.95355 * 359.97438 * 16 15 14 34 34 H 1.07999 * 121.00504 * 359.97438 * 18 17 16 35 35 H 1.07995 * 120.34399 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.19774 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6346 0.6103 -2.6009 9 14 1.2600 2.5589 -4.0113 10 1 0.4338 3.7259 -3.6106 11 1 2.4175 3.0245 -4.8166 12 1 0.4370 1.6251 -4.8212 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9095 2.3420 15 6 1.9632 2.7219 3.5187 16 6 1.0911 2.2958 4.4423 17 6 0.9243 3.4056 5.3867 18 6 0.1735 3.6024 6.5459 19 6 0.2790 4.8227 7.1880 20 6 1.1152 5.7956 6.6631 21 7 1.8139 5.5865 5.5672 22 6 1.7528 4.4370 4.9109 23 8 2.3566 3.9772 3.7970 24 1 -0.3633 0.5808 -0.8478 25 1 -0.3633 0.4438 0.9268 26 1 -0.3633 -1.0247 -0.0790 27 1 1.8935 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.8717 0.2783 -3.4809 30 1 1.4287 3.1225 1.0208 31 1 2.4322 0.8516 2.6043 32 1 3.4527 2.2117 2.0781 33 1 0.6085 1.3305 4.4832 34 1 -0.4706 2.8254 6.9302 35 1 -0.2849 5.0159 8.0886 36 1 1.1959 6.7481 7.1658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449243879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = 22.038951 kcal Electronic energy + Delta-G solvation = -18701.753693 eV Core-core repulsion = 15765.658792 eV Total energy + Delta-G solvation = -2936.094901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.62128 -39.92823 -38.19795 -35.08109 -34.27281 -32.88108 -32.26604 -30.75022 -28.44596 -26.38255 -25.02373 -24.57876 -23.25009 -22.30244 -20.98009 -19.05284 -18.66675 -17.59265 -17.52922 -17.13309 -16.84651 -16.02793 -15.51895 -15.26782 -14.81451 -14.63096 -14.23066 -14.07408 -13.99916 -13.88062 -13.50120 -13.25069 -12.97950 -12.84294 -12.64447 -12.42836 -12.02274 -11.75631 -11.62659 -11.30206 -10.81240 -10.55855 -10.46800 -9.98255 -9.48967 -9.13176 -8.11749 -6.23523 -0.20009 0.15395 1.21513 1.31854 1.39754 1.42924 1.53208 2.41703 2.73245 3.17354 3.21786 3.38988 3.69956 3.88181 4.01563 4.04833 4.20452 4.34742 4.55872 4.58293 4.65985 4.68574 4.81467 4.96417 5.03849 5.13702 5.29397 5.30787 5.38099 5.54401 5.55250 5.69572 5.81225 5.89092 6.00511 6.27074 6.36960 6.65819 6.80424 6.93594 7.44825 8.93275 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.004180 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.247999 B = 6697.712520 C = 7064.080979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C 0.220 3.780 4 H -0.027 1.027 5 C -0.526 4.526 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.672 5.672 14 C 0.138 3.862 15 C 0.035 3.965 16 C -0.173 4.173 17 C -0.190 4.190 18 C -0.027 4.027 19 C -0.179 4.179 20 C 0.135 3.865 21 N -0.514 5.514 22 C 0.214 3.786 23 O -0.214 6.214 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.330 0.670 31 H 0.118 0.882 32 H 0.034 0.966 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.190 0.810 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 3.993 19.577 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.112 3.888 4 H -0.009 1.009 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.303 5.303 14 C 0.009 3.991 15 C -0.013 4.013 16 C -0.193 4.193 17 C -0.193 4.193 18 C -0.053 4.053 19 C -0.198 4.198 20 C -0.027 4.027 21 N -0.233 5.233 22 C 0.040 3.960 23 O -0.113 6.113 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.052 0.948 33 H 0.203 0.797 34 H 0.190 0.810 35 H 0.207 0.793 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.191 4.102 19.033 20.150 hybrid contribution 0.401 0.299 -1.269 1.364 sum -4.790 4.401 17.764 18.918 Atomic orbital electron populations 1.21327 0.95987 0.98465 1.00879 1.21331 0.96297 0.97032 0.99144 1.19040 0.91294 0.92473 0.86001 1.00923 1.21437 1.31593 1.11993 0.91418 0.92838 1.25558 0.95184 0.95633 1.01529 1.69999 1.37411 1.23759 1.24069 0.85591 0.78070 0.78728 0.79757 1.19491 1.20872 1.20490 1.60848 1.48221 1.15919 1.05295 1.20587 0.94306 0.97883 0.86299 1.22560 0.98578 0.81548 0.98570 1.22437 1.01552 1.00899 0.94451 1.20972 1.02656 0.95547 1.00134 1.21516 0.94748 0.98703 0.90309 1.22524 1.01110 0.93039 1.03133 1.23448 0.89850 1.01134 0.88221 1.66311 1.26473 1.20177 1.10313 1.19967 0.94852 0.92661 0.88479 1.83849 1.59097 1.29656 1.38728 0.94852 0.92774 0.94642 0.95114 0.92175 0.92895 0.85312 0.86454 0.94801 0.79721 0.80979 0.79288 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.99 0.69 -3.95 16 2 C -0.10 -4.62 5.59 30.60 0.17 -4.45 16 3 C 0.22 10.79 2.30 44.17 0.10 10.89 16 4 H -0.03 -1.46 7.71 -2.39 -0.02 -1.48 16 5 C -0.53 -28.29 7.26 25.60 0.19 -28.11 16 6 H 0.05 2.89 7.60 -2.91 -0.02 2.87 16 7 C 0.02 1.12 5.30 84.65 0.45 1.57 16 8 N -0.91 -51.54 11.32 21.45 0.24 -51.30 16 9 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.67 -27.95 5.64 -499.45 -2.82 -30.77 16 14 C 0.14 4.88 6.04 85.56 0.52 5.40 16 15 C 0.03 1.17 6.70 24.72 0.17 1.34 16 16 C -0.17 -4.88 11.01 23.50 0.26 -4.62 16 17 C -0.19 -5.19 6.41 -20.20 -0.13 -5.32 16 18 C -0.03 -0.49 10.22 22.59 0.23 -0.26 16 19 C -0.18 -2.47 10.11 22.37 0.23 -2.24 16 20 C 0.14 2.51 11.14 84.81 0.95 3.45 16 21 N -0.51 -15.38 10.38 -308.20 -3.20 -18.58 16 22 C 0.21 7.18 8.58 85.16 0.73 7.91 16 23 O -0.21 -8.04 10.57 -8.88 -0.09 -8.13 16 24 H 0.03 1.55 7.07 -2.39 -0.02 1.53 16 25 H 0.05 2.14 7.74 -2.39 -0.02 2.12 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.33 14.37 8.13 -89.70 -0.73 13.64 16 31 H 0.12 3.72 7.61 -2.39 -0.02 3.70 16 32 H 0.03 1.26 7.94 -2.39 -0.02 1.25 16 33 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.58 305.12 1.06 -65.52 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.36 Total: 16.14 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.54 Total: -18.39 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -5.77 Total: -100.65 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.09 Total: -8.13 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.58 1.06 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.563 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds