Wall clock time and date at job start Mon Mar 30 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99860 * 2 1 4 4 N 1.46501 * 109.47420 * 124.99674 * 3 2 1 5 5 C 1.46502 * 120.00066 * 270.00006 * 4 3 2 6 6 C 1.50702 * 109.47140 * 269.99878 * 5 4 3 7 7 H 1.07996 * 119.99870 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99876 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00069 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47389 * 59.99972 * 10 8 6 12 12 H 1.48509 * 109.46925 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47105 * 299.99712 * 10 8 6 14 14 C 1.34780 * 120.00015 * 89.99776 * 4 3 2 15 15 O 1.21587 * 119.99639 * 180.02562 * 14 4 3 16 16 N 1.34773 * 119.99709 * 0.02562 * 14 4 3 17 17 C 1.39947 * 119.99554 * 184.59191 * 16 14 4 18 18 C 1.38874 * 120.06968 * 144.91088 * 17 16 14 19 19 C 1.38111 * 119.93009 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.07283 * 359.97438 * 19 18 17 21 21 C 1.38289 * 120.13879 * 0.04159 * 20 19 18 22 22 C 1.38110 * 120.06837 * 359.95558 * 21 20 19 23 23 H 1.08003 * 119.99968 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00030 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00365 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47163 * 4.99446 * 3 2 1 27 27 H 1.09005 * 109.47218 * 244.99892 * 3 2 1 28 28 H 1.09000 * 109.46946 * 29.99642 * 5 4 3 29 29 H 1.08990 * 109.47144 * 149.99594 * 5 4 3 30 30 H 0.97001 * 120.00304 * 179.97438 * 9 8 6 31 31 H 0.96998 * 120.00240 * 4.59404 * 16 14 4 32 32 H 1.07997 * 120.03013 * 359.70247 * 18 17 16 33 33 H 1.08003 * 119.96075 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.93394 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.96295 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.03694 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3030 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 1.9578 3.4665 4.6351 10 14 2.8712 5.9000 3.6765 11 1 2.1354 6.5870 2.5848 12 1 2.4304 6.4404 4.9877 13 1 4.3291 6.1298 3.5119 14 6 4.2496 0.8663 0.9825 15 8 5.0215 0.8883 1.9217 16 7 4.6499 0.3763 -0.2075 17 6 5.9208 -0.1950 -0.3372 18 6 6.1137 -1.2779 -1.1850 19 6 7.3693 -1.8391 -1.3111 20 6 8.4339 -1.3237 -0.5948 21 6 8.2450 -0.2457 0.2505 22 6 6.9919 0.3201 0.3810 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4027 -0.9314 28 1 1.4886 1.6968 2.5459 29 1 3.0987 1.3606 3.2259 30 1 1.7288 3.9751 5.4287 31 1 4.0571 0.4197 -0.9740 32 1 5.2819 -1.6834 -1.7417 33 1 7.5198 -2.6816 -1.9700 34 1 9.4148 -1.7641 -0.6955 35 1 9.0784 0.1543 0.8089 36 1 6.8451 1.1622 1.0411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493953303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:25 Heat of formation + Delta-G solvation = 29.119083 kcal Electronic energy + Delta-G solvation = -18980.736619 eV Core-core repulsion = 16044.948735 eV Total energy + Delta-G solvation = -2935.787884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23065 -38.38213 -35.80568 -34.39013 -33.13777 -32.11660 -30.68971 -29.32333 -27.35156 -25.50877 -23.37013 -22.53551 -21.63930 -20.08329 -19.23932 -17.88011 -16.98652 -16.50927 -16.01391 -15.16117 -15.01632 -14.62581 -14.35150 -13.94567 -13.66349 -13.42341 -13.19377 -12.76047 -12.54296 -12.18270 -11.83827 -11.46605 -11.30494 -11.10997 -11.05178 -10.92203 -10.58748 -10.19539 -10.00386 -9.68380 -9.25659 -9.23638 -8.71189 -8.43197 -7.98652 -7.60397 -6.04106 -4.09092 1.52356 1.62085 2.37895 3.25539 3.31883 3.36560 3.40303 3.73136 4.12407 4.37594 4.51829 5.04913 5.10872 5.15568 5.29801 5.32230 5.34749 5.47724 5.58440 5.75290 5.86138 5.94288 6.11018 6.19033 6.51280 6.53499 6.72838 6.74333 6.82770 6.84878 6.92021 7.34395 7.36260 7.50074 7.66425 7.93492 8.22599 8.55562 8.91364 9.22174 9.56214 11.03759 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.005922 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.980325 B = 4727.194456 C = 5903.598644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.603 5.603 5 C 0.262 3.738 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.698 3.302 15 O -0.566 6.566 16 N -0.698 5.698 17 C 0.178 3.822 18 C -0.158 4.158 19 C -0.105 4.105 20 C -0.149 4.149 21 C -0.102 4.102 22 C -0.121 4.121 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -8.778 -13.604 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.337 5.337 5 C 0.143 3.857 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.400 3.600 15 O -0.442 6.442 16 N -0.347 5.347 17 C 0.082 3.918 18 C -0.179 4.179 19 C -0.124 4.124 20 C -0.168 4.168 21 C -0.121 4.121 22 C -0.142 4.142 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.354 -8.654 -12.629 15.916 hybrid contribution -0.269 0.960 -0.265 1.031 sum 4.084 -7.694 -12.894 15.561 Atomic orbital electron populations 1.23825 0.95794 1.01830 1.00187 1.23442 0.96506 0.98952 1.00225 1.20531 0.93197 0.95712 0.89268 1.47596 1.08766 1.63088 1.14211 1.19234 0.95266 0.93562 0.77664 1.21412 1.40663 0.93361 1.01281 0.92525 1.24915 0.95036 0.98723 0.95303 1.69920 1.41904 1.36280 1.05199 0.86564 0.78824 0.84912 0.77133 1.20287 1.21173 1.20201 1.15951 0.83223 0.78595 0.82186 1.90890 1.52655 1.61321 1.39370 1.42997 1.15773 1.63746 1.12200 1.17613 0.84313 0.92587 0.97274 1.20843 0.98102 0.96024 1.02939 1.20822 0.92379 0.99576 0.99585 1.21037 0.98790 0.98204 0.98794 1.21070 0.96839 0.96194 0.97998 1.21503 0.90956 1.01395 1.00331 0.88201 0.88727 0.87794 0.88991 0.91566 0.94750 0.93720 0.92645 0.76244 0.86195 0.86232 0.86523 0.86073 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.02 0.42 -1.84 16 2 C -0.17 -2.40 9.85 -36.02 -0.35 -2.75 16 3 C 0.14 2.18 5.65 -5.19 -0.03 2.15 16 4 N -0.60 -12.72 2.44 -182.18 -0.44 -13.16 16 5 C 0.26 6.83 5.16 -5.19 -0.03 6.80 16 6 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.70 14.93 8.12 -86.92 -0.71 14.22 16 15 O -0.57 -14.48 13.36 5.29 0.07 -14.41 16 16 N -0.70 -11.51 5.22 -14.22 -0.07 -11.58 16 17 C 0.18 2.86 6.30 -83.68 -0.53 2.34 16 18 C -0.16 -2.05 9.97 -39.39 -0.39 -2.44 16 19 C -0.10 -1.22 10.04 -39.61 -0.40 -1.62 16 20 C -0.15 -1.80 10.04 -39.55 -0.40 -2.20 16 21 C -0.10 -1.44 10.04 -39.61 -0.40 -1.84 16 22 C -0.12 -2.08 8.70 -39.40 -0.34 -2.42 16 23 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 24 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 27 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.40 5.29 6.52 -40.82 -0.27 5.02 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.14 2.89 6.23 -52.49 -0.33 2.56 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -32.74 312.75 -8.22 -40.95 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.62 Total: 5.58 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.58 Total: -3.12 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.22 Total: -50.51 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.74 -8.22 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493953303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.070 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds