Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99860 * 2 1 4 4 N 1.46501 * 109.47420 * 124.99674 * 3 2 1 5 5 C 1.46502 * 120.00066 * 270.00006 * 4 3 2 6 6 C 1.50702 * 109.47140 * 269.99878 * 5 4 3 7 7 H 1.07996 * 119.99870 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99876 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00069 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47389 * 59.99972 * 10 8 6 12 12 H 1.48509 * 109.46925 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47105 * 299.99712 * 10 8 6 14 14 C 1.34780 * 120.00015 * 89.99776 * 4 3 2 15 15 O 1.21587 * 119.99639 * 180.02562 * 14 4 3 16 16 N 1.34773 * 119.99709 * 0.02562 * 14 4 3 17 17 C 1.39947 * 119.99554 * 184.59191 * 16 14 4 18 18 C 1.38874 * 120.06968 * 144.91088 * 17 16 14 19 19 C 1.38111 * 119.93009 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.07283 * 359.97438 * 19 18 17 21 21 C 1.38289 * 120.13879 * 0.04159 * 20 19 18 22 22 C 1.38110 * 120.06837 * 359.95558 * 21 20 19 23 23 H 1.08003 * 119.99968 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00030 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00365 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47163 * 4.99446 * 3 2 1 27 27 H 1.09005 * 109.47218 * 244.99892 * 3 2 1 28 28 H 1.09000 * 109.46946 * 29.99642 * 5 4 3 29 29 H 1.08990 * 109.47144 * 149.99594 * 5 4 3 30 30 H 0.97001 * 120.00304 * 179.97438 * 9 8 6 31 31 H 0.96998 * 120.00240 * 4.59404 * 16 14 4 32 32 H 1.07997 * 120.03013 * 359.70247 * 18 17 16 33 33 H 1.08003 * 119.96075 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.93394 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.96295 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.03694 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3030 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 1.9578 3.4665 4.6351 10 14 2.8712 5.9000 3.6765 11 1 2.1354 6.5870 2.5848 12 1 2.4304 6.4404 4.9877 13 1 4.3291 6.1298 3.5119 14 6 4.2496 0.8663 0.9825 15 8 5.0215 0.8883 1.9217 16 7 4.6499 0.3763 -0.2075 17 6 5.9208 -0.1950 -0.3372 18 6 6.1137 -1.2779 -1.1850 19 6 7.3693 -1.8391 -1.3111 20 6 8.4339 -1.3237 -0.5948 21 6 8.2450 -0.2457 0.2505 22 6 6.9919 0.3201 0.3810 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4027 -0.9314 28 1 1.4886 1.6968 2.5459 29 1 3.0987 1.3606 3.2259 30 1 1.7288 3.9751 5.4287 31 1 4.0571 0.4197 -0.9740 32 1 5.2819 -1.6834 -1.7417 33 1 7.5198 -2.6816 -1.9700 34 1 9.4148 -1.7641 -0.6955 35 1 9.0784 0.1543 0.8089 36 1 6.8451 1.1622 1.0411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493953303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = 9.158392 kcal Electronic energy + Delta-G solvation = -18981.602180 eV Core-core repulsion = 16044.948735 eV Total energy + Delta-G solvation = -2936.653444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69627 -39.63767 -37.32571 -35.87637 -34.94982 -33.73746 -31.75312 -30.70358 -29.11801 -26.97298 -25.20892 -23.68112 -22.98147 -21.35766 -20.62131 -19.30384 -18.59520 -18.36345 -17.27115 -16.74968 -16.51181 -16.03668 -15.90097 -15.27414 -14.93654 -14.79821 -14.45950 -14.23351 -14.08007 -13.65057 -13.33186 -13.12695 -12.91203 -12.61069 -12.49438 -12.28740 -12.20190 -12.12015 -11.71901 -11.34305 -10.89729 -10.64367 -10.36171 -9.79650 -9.61377 -8.96636 -8.21693 -6.36849 0.43195 0.53913 1.24417 1.36351 1.40572 1.47934 1.84970 2.16808 2.39036 2.97315 3.03213 3.08596 3.98566 4.07237 4.15824 4.18133 4.31081 4.36977 4.58089 4.62317 4.72559 4.77933 4.92615 5.03085 5.15228 5.21049 5.43080 5.49079 5.51525 5.65656 5.68415 5.70694 5.74108 5.90520 6.05684 6.08498 6.19984 6.71478 7.02761 7.30163 7.61655 8.84741 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.005922 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.980325 B = 4727.194456 C = 5903.598644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C 0.134 3.866 4 N -0.608 5.608 5 C 0.281 3.719 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.694 3.306 15 O -0.620 6.620 16 N -0.677 5.677 17 C 0.146 3.854 18 C -0.148 4.148 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.112 4.112 22 C -0.155 4.155 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.027 0.973 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.417 0.583 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -9.892 -16.281 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.012 3.988 4 N -0.341 5.341 5 C 0.160 3.840 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.396 3.604 15 O -0.500 6.500 16 N -0.328 5.328 17 C 0.052 3.948 18 C -0.169 4.169 19 C -0.116 4.116 20 C -0.158 4.158 21 C -0.131 4.131 22 C -0.176 4.176 23 H 0.119 0.881 24 H 0.135 0.865 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.257 0.743 32 H 0.168 0.832 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.590 -9.792 -15.392 18.811 hybrid contribution -0.298 1.202 0.514 1.341 sum 4.292 -8.590 -14.878 17.707 Atomic orbital electron populations 1.24063 0.95389 1.03025 0.97614 1.23292 0.96913 0.97984 1.02482 1.20785 0.92743 0.96856 0.88461 1.47425 1.09754 1.62939 1.14018 1.18630 0.93836 0.92454 0.79091 1.21676 1.40717 0.94446 1.01445 0.93006 1.25816 0.94612 1.03654 0.94791 1.70039 1.42656 1.38182 1.05767 0.85491 0.78363 0.79119 0.77951 1.18400 1.20229 1.20600 1.16141 0.82752 0.78526 0.83010 1.90854 1.54107 1.63375 1.41628 1.42619 1.16391 1.62891 1.10881 1.17903 0.83428 0.94419 0.99097 1.21179 0.99894 0.94315 1.01514 1.21354 0.91299 0.99869 0.99033 1.21465 1.00714 0.96641 0.97021 1.21259 0.95869 0.97074 0.98886 1.21344 0.93277 1.01622 1.01380 0.88060 0.86465 0.87163 0.89739 0.88482 0.95514 0.98510 0.92366 0.74284 0.83236 0.82095 0.83067 0.85063 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 14.32 67.78 0.97 -2.85 16 2 C -0.19 -5.01 9.85 25.65 0.25 -4.75 16 3 C 0.13 4.22 5.65 85.63 0.48 4.70 16 4 N -0.61 -26.66 2.44 -848.56 -2.07 -28.74 16 5 C 0.28 15.49 5.16 85.63 0.44 15.94 16 6 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.69 31.09 8.12 179.05 1.45 32.55 16 15 O -0.62 -34.14 13.36 -3.99 -0.05 -34.19 16 16 N -0.68 -22.52 5.22 -317.17 -1.65 -24.17 16 17 C 0.15 4.69 6.30 38.15 0.24 4.93 16 18 C -0.15 -3.41 9.97 22.39 0.22 -3.19 16 19 C -0.10 -1.85 10.04 22.25 0.22 -1.63 16 20 C -0.14 -2.93 10.04 22.29 0.22 -2.70 16 21 C -0.11 -3.12 10.04 22.25 0.22 -2.90 16 22 C -0.16 -5.59 8.70 22.39 0.19 -5.39 16 23 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 24 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 25 H 0.11 2.82 8.06 -2.91 -0.02 2.80 16 26 H 0.08 2.78 7.72 -2.39 -0.02 2.76 16 27 H 0.10 2.39 6.30 -2.38 -0.02 2.37 16 28 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 29 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.42 10.53 6.52 -92.71 -0.60 9.92 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.10 4.44 6.23 -2.91 -0.02 4.42 16 Total: -1.00 -76.31 312.75 4.64 -71.67 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.47 Total: 20.04 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.63 Total: 4.21 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.44 Total: -109.15 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.05 Total: -34.19 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -76.31 4.64 -71.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493953303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.827 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds