Wall clock time and date at job start Mon Mar 30 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 H 1.08995 * 115.56239 * 29.31032 * 3 2 1 5 5 C 1.53000 * 117.49785 * 243.61553 * 3 2 1 6 6 C 1.52996 * 60.00456 * 252.51445 * 5 3 2 7 7 H 1.08998 * 117.49771 * 107.51058 * 6 5 3 8 8 C 1.50697 * 117.49962 * 252.51276 * 6 5 3 9 9 O 1.21284 * 119.99853 * 68.60940 * 8 6 5 10 10 N 1.34772 * 120.00042 * 248.60750 * 8 6 5 11 11 C 1.39468 * 119.99835 * 175.34145 * 10 8 6 12 12 C 1.38607 * 119.57804 * 186.42295 * 11 10 8 13 13 C 1.40809 * 118.79547 * 180.02562 * 12 11 10 14 14 C 1.41536 * 120.99487 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00303 * 338.91017 * 14 13 12 16 16 C 1.40037 * 120.00288 * 158.91821 * 14 13 12 17 17 N 1.30736 * 119.99588 * 346.33849 * 16 14 13 18 18 Si 1.86792 * 120.00207 * 166.34008 * 16 14 13 19 19 H 1.48496 * 109.47273 * 59.99829 * 18 16 14 20 20 H 1.48505 * 109.47138 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47173 * 299.99716 * 18 16 14 22 22 C 1.41174 * 118.00799 * 0.02562 * 13 12 11 23 23 C 1.37587 * 119.01590 * 359.97438 * 22 13 12 24 24 N 1.32085 * 121.10996 * 359.97438 * 23 22 13 25 25 H 1.09004 * 109.46652 * 60.00058 * 1 2 3 26 26 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47097 * 299.99934 * 1 2 3 28 28 H 1.08999 * 109.47346 * 239.99866 * 2 1 3 29 29 H 1.09004 * 109.46652 * 119.99942 * 2 1 3 30 30 H 1.09000 * 117.49606 * 145.01914 * 5 3 2 31 31 H 1.09003 * 117.51870 * 0.02562 * 5 3 2 32 32 H 0.97002 * 120.00239 * 355.33949 * 10 8 6 33 33 H 1.08001 * 120.60036 * 0.04556 * 12 11 10 34 34 H 0.97001 * 119.99959 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.49467 * 179.97438 * 22 13 12 36 36 H 1.08002 * 119.44920 * 179.71774 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8441 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7721 0.1960 8 6 4.0229 2.8619 0.8914 9 8 3.2158 3.6167 1.3913 10 7 5.3424 3.1000 1.0275 11 6 5.7795 4.2644 1.6585 12 6 7.1321 4.5666 1.6761 13 6 7.5552 5.7462 2.3183 14 6 8.9250 6.0997 2.3646 15 1 9.6830 5.3433 2.2239 16 6 9.2974 7.4302 2.5930 17 7 8.4078 8.3834 2.4982 18 14 11.0653 7.8428 3.0330 19 1 11.9642 7.4018 1.9363 20 1 11.1988 9.3097 3.2222 21 1 11.4384 7.1451 4.2897 22 6 6.5725 6.5650 2.9155 23 6 5.2528 6.1819 2.8466 24 7 4.8968 5.0675 2.2335 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.7214 2.9427 -1.5343 31 1 3.0096 1.1861 -2.0160 32 1 5.9882 2.4615 0.6865 33 1 7.8484 3.9095 1.2055 34 1 8.6658 9.3051 2.6560 35 1 6.8523 7.4785 3.4191 36 1 4.4956 6.8007 3.3051 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569435111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:01 Heat of formation + Delta-G solvation = -5.640534 kcal Electronic energy + Delta-G solvation = -18362.069973 eV Core-core repulsion = 15424.774799 eV Total energy + Delta-G solvation = -2937.295174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39482 -39.90656 -37.95415 -36.25168 -35.31160 -32.89876 -32.61667 -30.45801 -27.96575 -25.93108 -24.61713 -23.70719 -22.98242 -21.42364 -20.83944 -19.68205 -18.33742 -17.74060 -16.92222 -16.27413 -16.10854 -15.98935 -15.69348 -15.32556 -15.13076 -14.73034 -14.27487 -14.15953 -13.51772 -13.35958 -13.16828 -12.96771 -12.89915 -12.85553 -12.18800 -12.07067 -11.90999 -11.87613 -11.49751 -11.22912 -11.20031 -10.98955 -10.84210 -10.02993 -9.62780 -8.88839 -8.63191 -6.60974 0.72533 0.94835 1.39996 1.52472 1.54860 1.78573 2.07545 2.19299 2.76470 2.90950 3.54633 3.73221 3.76490 3.87614 4.08422 4.27343 4.29549 4.50935 4.58839 4.73849 4.78730 4.83464 4.91344 4.95973 5.00300 5.03084 5.17148 5.24147 5.25680 5.32298 5.46830 5.51998 5.62963 5.94427 6.10879 6.43016 6.62258 6.77262 6.80543 7.31282 7.83508 8.23469 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.057701 B = 0.003610 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.139718 B = 7754.166475 C = 8037.606637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.121 4.121 4 H 0.086 0.914 5 C -0.134 4.134 6 C -0.190 4.190 7 H 0.157 0.843 8 C 0.519 3.481 9 O -0.533 6.533 10 N -0.647 5.647 11 C 0.344 3.656 12 C -0.316 4.316 13 C 0.113 3.887 14 C -0.477 4.477 15 H 0.089 0.911 16 C 0.033 3.967 17 N -0.814 5.814 18 Si 0.994 3.006 19 H -0.255 1.255 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.249 4.249 23 C 0.094 3.906 24 N -0.583 5.583 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.426 0.574 33 H 0.124 0.876 34 H 0.293 0.707 35 H 0.127 0.873 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -13.261 -6.203 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.140 4.140 4 H 0.104 0.896 5 C -0.171 4.171 6 C -0.211 4.211 7 H 0.175 0.825 8 C 0.307 3.693 9 O -0.407 6.407 10 N -0.295 5.295 11 C 0.116 3.884 12 C -0.341 4.341 13 C 0.105 3.895 14 C -0.508 4.508 15 H 0.107 0.893 16 C -0.184 4.184 17 N -0.439 5.439 18 Si 0.814 3.186 19 H -0.179 1.179 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.273 4.273 23 C -0.057 4.057 24 N -0.303 5.303 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.265 0.735 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.085 -12.730 -5.904 15.295 hybrid contribution 1.803 0.802 0.314 1.998 sum -4.282 -11.929 -5.590 13.852 Atomic orbital electron populations 1.21752 0.95019 1.02345 1.01671 1.21158 0.96387 0.91639 1.03254 1.22510 0.90458 0.99777 1.01223 0.89557 1.23209 1.00426 1.03079 0.90432 1.22349 0.98664 0.97620 1.02472 0.82549 1.20747 0.81713 0.86797 0.80056 1.90752 1.54093 1.49001 1.46820 1.43413 1.08451 1.20530 1.57076 1.18351 0.89321 0.87838 0.92938 1.21378 0.93330 1.04655 1.14765 1.18019 0.94453 0.90120 0.86888 1.19918 0.92128 0.94977 1.43733 0.89292 1.26974 1.04825 0.95355 0.91208 1.69805 1.38185 1.02331 1.33573 0.85067 0.75529 0.78030 0.80002 1.17944 1.19182 1.18252 1.22394 0.93197 1.04260 1.07405 1.22195 0.94877 0.92515 0.96101 1.67323 1.37439 1.07506 1.18043 0.92431 0.91072 0.93779 0.89384 0.91211 0.90321 0.84155 0.73504 0.85833 0.89609 0.85549 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.87 71.98 0.71 -1.53 16 2 C -0.09 -1.35 6.22 30.60 0.19 -1.16 16 3 C -0.12 -2.73 5.25 -10.79 -0.06 -2.79 16 4 H 0.09 2.53 7.60 -2.39 -0.02 2.51 16 5 C -0.13 -2.74 9.88 30.59 0.30 -2.44 16 6 C -0.19 -4.61 5.91 -11.54 -0.07 -4.67 16 7 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 8 C 0.52 19.49 7.57 87.66 0.66 20.15 16 9 O -0.53 -25.67 14.52 -3.04 -0.04 -25.71 16 10 N -0.65 -24.44 5.39 -308.66 -1.66 -26.11 16 11 C 0.34 16.81 7.41 132.76 0.98 17.79 16 12 C -0.32 -15.56 9.73 22.99 0.22 -15.33 16 13 C 0.11 6.17 5.64 -21.12 -0.12 6.05 16 14 C -0.48 -24.78 9.14 23.52 0.22 -24.56 16 15 H 0.09 4.31 7.88 -2.91 -0.02 4.28 16 16 C 0.03 1.62 5.28 85.29 0.45 2.07 16 17 N -0.81 -41.32 10.57 21.84 0.23 -41.09 16 18 Si 0.99 36.09 29.58 68.60 2.03 38.12 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 22 C -0.25 -13.66 8.82 22.84 0.20 -13.46 16 23 C 0.09 5.00 11.15 84.50 0.94 5.94 16 24 N -0.58 -31.56 7.86 -193.53 -1.52 -33.08 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.98 7.88 -2.39 -0.02 0.96 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.14 1.81 8.03 -2.39 -0.02 1.79 16 32 H 0.43 11.98 8.70 -92.71 -0.81 11.18 16 33 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 34 H 0.29 13.35 8.29 -92.71 -0.77 12.58 16 35 H 0.13 7.04 5.87 -2.91 -0.02 7.02 16 36 H 0.14 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -70.80 310.34 3.96 -66.84 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.29 Total: 34.97 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.64 Total: -13.94 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -2.95 Total: -100.27 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -70.80 3.96 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569435111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.201 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds