Wall clock time and date at job start Mon Mar 30 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47351 * 2 1 4 4 H 1.09000 * 109.46426 * 54.99798 * 3 2 1 5 5 C 1.50698 * 109.47480 * 175.00128 * 3 2 1 6 6 H 1.07997 * 119.99680 * 119.99897 * 5 3 2 7 7 C 1.37875 * 119.99544 * 299.99985 * 5 3 2 8 8 N 1.31516 * 119.99430 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00605 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47335 * 89.99869 * 9 7 5 11 11 H 1.48497 * 109.47195 * 210.00022 * 9 7 5 12 12 H 1.48506 * 109.46738 * 329.99712 * 9 7 5 13 13 O 1.42904 * 109.46765 * 295.00379 * 3 2 1 14 14 C 1.34903 * 116.99919 * 89.99733 * 13 3 2 15 15 O 1.21621 * 120.00519 * 359.97438 * 14 13 3 16 16 C 1.46245 * 119.99712 * 180.02562 * 14 13 3 17 17 C 1.34914 * 119.99700 * 187.31561 * 16 14 13 18 18 C 1.47175 * 120.00205 * 10.19962 * 17 16 14 19 19 C 1.39859 * 120.16903 * 43.75937 * 18 17 16 20 20 C 1.37885 * 119.82166 * 179.97438 * 19 18 17 21 21 C 1.38407 * 120.17406 * 359.97438 * 20 19 18 22 22 C 1.38402 * 120.34749 * 0.02562 * 21 20 19 23 23 C 1.37892 * 120.17483 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47562 * 60.00105 * 1 2 3 25 25 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47306 * 299.99703 * 1 2 3 27 27 H 1.09003 * 109.47550 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.47555 * 119.99890 * 2 1 3 29 29 H 0.97007 * 120.00004 * 180.02562 * 8 7 5 30 30 H 1.07993 * 119.99902 * 7.30509 * 16 14 13 31 31 H 1.07997 * 119.99730 * 190.20496 * 17 16 14 32 32 H 1.07991 * 120.08439 * 359.95212 * 19 18 17 33 33 H 1.07996 * 119.91137 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.82395 * 179.74021 * 21 20 19 35 35 H 1.08004 * 119.91453 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.08535 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3272 2.2633 11 1 3.7937 0.2348 3.8751 12 1 1.7876 0.8074 2.6386 13 8 1.6618 2.0814 -1.2211 14 6 0.4727 2.7183 -1.2363 15 8 -0.2238 2.7300 -0.2394 16 6 0.0207 3.3939 -2.4521 17 6 -1.0940 4.1534 -2.4269 18 6 -1.7285 4.4869 -1.1414 19 6 -0.9448 4.8818 -0.0524 20 6 -1.5467 5.1931 1.1484 21 6 -2.9226 5.1162 1.2775 22 6 -3.7049 4.7262 0.2045 23 6 -3.1179 4.4106 -1.0027 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8770 0.4821 2.1128 30 1 0.5792 3.2848 -3.3699 31 1 -1.5209 4.5167 -3.3500 32 1 0.1288 4.9423 -0.1517 33 1 -0.9430 5.4978 1.9905 34 1 -3.3878 5.3572 2.2219 35 1 -4.7779 4.6682 0.3131 36 1 -3.7298 4.1069 -1.8392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588558034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:09 Heat of formation + Delta-G solvation = -32.958802 kcal Electronic energy + Delta-G solvation = -19474.896122 eV Core-core repulsion = 16504.123588 eV Total energy + Delta-G solvation = -2970.772534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14533 -38.74584 -36.26688 -33.71893 -33.50996 -31.88959 -30.75240 -29.65277 -27.80869 -24.56753 -22.79965 -22.32897 -21.89142 -20.28913 -19.09651 -17.65136 -16.67152 -16.60349 -15.71481 -15.62830 -14.90583 -14.55425 -14.27283 -13.77802 -13.45044 -13.26079 -12.97042 -12.65688 -12.40078 -12.35737 -11.94968 -11.65279 -11.46585 -11.23186 -11.02515 -10.98816 -10.73766 -10.09168 -9.97254 -9.76245 -9.56775 -9.47948 -9.05026 -8.69423 -8.57996 -8.01247 -6.22363 -4.24355 0.77569 1.63846 1.96098 3.18813 3.30930 3.34260 3.47721 3.65276 4.01696 4.27099 4.75234 4.99708 5.07467 5.09571 5.22801 5.31135 5.53299 5.57680 5.73487 5.83844 5.92090 5.98694 6.02996 6.09174 6.22350 6.31472 6.47869 6.59011 6.60607 6.66941 6.70259 6.76838 6.77681 7.09813 7.15533 7.40372 7.56393 8.25430 8.66383 8.86215 9.35598 10.89708 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.006130 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.504071 B = 4566.297649 C = 4888.001376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.044 0.956 5 C -0.524 4.524 6 H 0.086 0.914 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.260 1.260 13 O -0.331 6.331 14 C 0.473 3.527 15 O -0.500 6.500 16 C -0.176 4.176 17 C -0.032 4.032 18 C -0.075 4.075 19 C -0.035 4.035 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.138 4.138 23 C -0.101 4.101 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.269 0.731 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 6.827 -4.960 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.140 3.860 4 H 0.062 0.938 5 C -0.562 4.562 6 H 0.104 0.896 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.706 3.294 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.185 1.185 13 O -0.246 6.246 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.075 4.075 19 C -0.053 4.053 20 C -0.149 4.149 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.989 6.743 -4.525 17.933 hybrid contribution -0.336 -0.761 0.865 1.200 sum -16.325 5.982 -3.660 17.767 Atomic orbital electron populations 1.21879 0.96948 0.99827 1.01797 1.22384 0.94345 0.99839 1.02032 1.20547 0.96248 0.88152 0.81095 0.93792 1.20819 0.87793 1.39782 1.07763 0.89585 1.24736 0.94915 0.95272 0.97384 1.69844 1.08495 1.44430 1.29820 0.86990 0.81023 0.80130 0.81228 1.20025 1.21773 1.18502 1.86209 1.34106 1.62374 1.41938 1.21334 0.80744 0.77681 0.88338 1.90893 1.54689 1.58178 1.35436 1.22510 0.98261 1.00930 0.97756 1.22428 0.92605 0.93296 0.96716 1.18894 0.93386 1.01514 0.93696 1.21154 0.98964 0.93252 0.91938 1.20975 0.94778 1.01598 0.97545 1.21155 0.93986 0.99303 0.98318 1.20893 0.99377 1.01899 0.93478 1.21109 0.93379 0.99635 0.97738 0.93540 0.94168 0.92585 0.91385 0.92018 0.92114 0.83937 0.84210 0.86658 0.86290 0.86622 0.86523 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.55 37.15 0.32 -2.65 16 2 C -0.15 -3.41 5.14 -26.73 -0.14 -3.55 16 3 C 0.19 4.87 1.81 -27.88 -0.05 4.82 16 4 H 0.04 1.17 6.17 -51.93 -0.32 0.85 16 5 C -0.52 -15.05 9.47 -34.44 -0.33 -15.37 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 9 Si 0.88 21.85 24.41 -169.99 -4.15 17.70 16 10 H -0.27 -6.58 6.83 56.52 0.39 -6.19 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.03 16 13 O -0.33 -7.52 9.70 -41.05 -0.40 -7.92 16 14 C 0.47 9.16 5.32 33.95 0.18 9.34 16 15 O -0.50 -10.34 9.22 -19.36 -0.18 -10.52 16 16 C -0.18 -2.52 10.05 -37.55 -0.38 -2.89 16 17 C -0.03 -0.39 9.81 -37.13 -0.36 -0.76 16 18 C -0.07 -1.06 4.55 -105.06 -0.48 -1.54 16 19 C -0.03 -0.55 6.58 -39.10 -0.26 -0.81 16 20 C -0.13 -1.91 10.03 -39.65 -0.40 -2.31 16 21 C -0.11 -1.41 10.04 -39.46 -0.40 -1.80 16 22 C -0.14 -1.68 10.03 -39.65 -0.40 -2.08 16 23 C -0.10 -1.26 9.80 -39.11 -0.38 -1.64 16 24 H 0.05 0.91 6.05 -51.93 -0.31 0.60 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.18 7.75 -51.93 -0.40 0.78 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.47 3.21 -51.93 -0.17 1.30 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.94 6.98 -52.49 -0.37 1.57 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -31.82 295.54 -7.22 -39.05 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.56 Total: 2.34 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.16 Total: -19.04 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.58 Total: -18.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.82 -7.22 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds