Wall clock time and date at job start Mon Mar 30 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47351 * 2 1 4 4 H 1.09000 * 109.46426 * 54.99798 * 3 2 1 5 5 C 1.50698 * 109.47480 * 175.00128 * 3 2 1 6 6 H 1.07997 * 119.99680 * 119.99897 * 5 3 2 7 7 C 1.37875 * 119.99544 * 299.99985 * 5 3 2 8 8 N 1.31516 * 119.99430 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00605 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47335 * 89.99869 * 9 7 5 11 11 H 1.48497 * 109.47195 * 210.00022 * 9 7 5 12 12 H 1.48506 * 109.46738 * 329.99712 * 9 7 5 13 13 O 1.42904 * 109.46765 * 295.00379 * 3 2 1 14 14 C 1.34903 * 116.99919 * 89.99733 * 13 3 2 15 15 O 1.21621 * 120.00519 * 359.97438 * 14 13 3 16 16 C 1.46245 * 119.99712 * 180.02562 * 14 13 3 17 17 C 1.34914 * 119.99700 * 187.31561 * 16 14 13 18 18 C 1.47175 * 120.00205 * 10.19962 * 17 16 14 19 19 C 1.39859 * 120.16903 * 43.75937 * 18 17 16 20 20 C 1.37885 * 119.82166 * 179.97438 * 19 18 17 21 21 C 1.38407 * 120.17406 * 359.97438 * 20 19 18 22 22 C 1.38402 * 120.34749 * 0.02562 * 21 20 19 23 23 C 1.37892 * 120.17483 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47562 * 60.00105 * 1 2 3 25 25 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47306 * 299.99703 * 1 2 3 27 27 H 1.09003 * 109.47550 * 239.99843 * 2 1 3 28 28 H 1.09004 * 109.47555 * 119.99890 * 2 1 3 29 29 H 0.97007 * 120.00004 * 180.02562 * 8 7 5 30 30 H 1.07993 * 119.99902 * 7.30509 * 16 14 13 31 31 H 1.07997 * 119.99730 * 190.20496 * 17 16 14 32 32 H 1.07991 * 120.08439 * 359.95212 * 19 18 17 33 33 H 1.07996 * 119.91137 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.82395 * 179.74021 * 21 20 19 35 35 H 1.08004 * 119.91453 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.08535 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3272 2.2633 11 1 3.7937 0.2348 3.8751 12 1 1.7876 0.8074 2.6386 13 8 1.6618 2.0814 -1.2211 14 6 0.4727 2.7183 -1.2363 15 8 -0.2238 2.7300 -0.2394 16 6 0.0207 3.3939 -2.4521 17 6 -1.0940 4.1534 -2.4269 18 6 -1.7285 4.4869 -1.1414 19 6 -0.9448 4.8818 -0.0524 20 6 -1.5467 5.1931 1.1484 21 6 -2.9226 5.1162 1.2775 22 6 -3.7049 4.7262 0.2045 23 6 -3.1179 4.4106 -1.0027 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8770 0.4821 2.1128 30 1 0.5792 3.2848 -3.3699 31 1 -1.5209 4.5167 -3.3500 32 1 0.1288 4.9423 -0.1517 33 1 -0.9430 5.4978 1.9905 34 1 -3.3878 5.3572 2.2219 35 1 -4.7779 4.6682 0.3131 36 1 -3.7298 4.1069 -1.8392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588558034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:09 Heat of formation + Delta-G solvation = -51.434225 kcal Electronic energy + Delta-G solvation = -19475.697277 eV Core-core repulsion = 16504.123588 eV Total energy + Delta-G solvation = -2971.573689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63968 -39.91840 -37.84704 -35.47711 -34.84580 -33.89565 -31.77290 -30.77107 -29.72570 -25.96353 -24.59617 -23.43829 -23.16048 -21.97117 -20.49973 -19.16703 -18.61341 -18.04088 -17.21301 -17.08278 -16.34383 -15.82478 -15.56381 -15.32263 -14.80320 -14.78135 -14.36599 -13.99648 -13.87055 -13.81328 -13.64193 -13.24489 -13.12042 -13.07118 -12.59514 -12.09037 -12.05175 -11.99670 -11.54783 -11.48972 -11.24157 -11.10453 -10.85567 -10.70262 -9.68880 -9.11782 -8.46748 -6.54596 -0.32433 0.59335 0.89102 1.19770 1.27277 1.37412 2.11436 2.16678 2.17518 2.85796 2.98169 3.75632 3.92853 4.05461 4.10525 4.12944 4.17462 4.27445 4.30221 4.50291 4.58381 4.59566 4.71570 4.90748 4.93636 5.00192 5.02784 5.07399 5.18696 5.27637 5.34641 5.37917 5.59736 5.65183 5.68464 5.77199 6.15516 6.19146 6.49242 7.00375 7.14742 8.69404 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.006130 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.504071 B = 4566.297649 C = 4888.001376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.202 3.798 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.044 0.956 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.939 3.061 10 H -0.252 1.252 11 H -0.283 1.283 12 H -0.258 1.258 13 O -0.351 6.351 14 C 0.466 3.534 15 O -0.518 6.518 16 C -0.204 4.204 17 C 0.006 3.994 18 C -0.098 4.098 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.098 4.098 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.275 0.725 30 H 0.167 0.833 31 H 0.193 0.807 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 6.417 -5.543 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.147 3.853 4 H 0.043 0.957 5 C -0.577 4.577 6 H 0.062 0.938 7 C -0.168 4.168 8 N -0.569 5.569 9 Si 0.764 3.236 10 H -0.177 1.177 11 H -0.210 1.210 12 H -0.182 1.182 13 O -0.268 6.268 14 C 0.314 3.686 15 O -0.410 6.410 16 C -0.223 4.223 17 C -0.012 4.012 18 C -0.098 4.098 19 C -0.080 4.080 20 C -0.171 4.171 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.185 0.815 31 H 0.210 0.790 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.664 6.341 -5.125 21.287 hybrid contribution 0.737 -0.463 1.015 1.337 sum -18.928 5.878 -4.110 20.241 Atomic orbital electron populations 1.21757 0.94451 1.01691 1.01335 1.22284 0.96516 0.97801 1.01815 1.20148 0.93688 0.89719 0.81747 0.95666 1.21035 0.89939 1.39672 1.07056 0.93751 1.25545 0.96042 0.95588 0.99632 1.69966 1.10324 1.45597 1.31008 0.85995 0.79236 0.80204 0.78165 1.17742 1.20991 1.18225 1.86189 1.36576 1.63390 1.40598 1.22268 0.79322 0.77122 0.89935 1.90881 1.54812 1.58720 1.36548 1.22569 1.00148 1.03250 0.96335 1.22959 0.90421 0.90001 0.97775 1.19213 0.94450 1.02054 0.94056 1.21116 0.97988 0.95445 0.93488 1.21148 0.96118 1.02555 0.97320 1.21480 0.93164 0.98636 0.99871 1.21353 1.01028 1.00334 0.92913 1.21532 0.92729 0.98251 0.99031 0.93308 0.91030 0.93724 0.91114 0.92638 0.91589 0.81535 0.79044 0.89398 0.86555 0.84344 0.83280 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.55 71.98 0.62 -4.59 16 2 C -0.15 -6.66 5.14 30.59 0.16 -6.51 16 3 C 0.20 10.43 1.81 29.85 0.05 10.48 16 4 H 0.03 1.40 6.17 -2.39 -0.01 1.38 16 5 C -0.54 -32.45 9.47 25.60 0.24 -32.21 16 6 H 0.04 2.95 8.06 -2.91 -0.02 2.92 16 7 C 0.03 1.87 5.45 84.65 0.46 2.33 16 8 N -0.93 -57.97 13.96 21.45 0.30 -57.67 16 9 Si 0.94 45.46 24.41 68.60 1.67 47.14 16 10 H -0.25 -11.31 6.83 99.48 0.68 -10.63 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 13 O -0.35 -16.50 9.70 -58.18 -0.56 -17.07 16 14 C 0.47 18.20 5.32 69.90 0.37 18.57 16 15 O -0.52 -21.59 9.22 19.44 0.18 -21.41 16 16 C -0.20 -5.57 10.05 23.59 0.24 -5.33 16 17 C 0.01 0.13 9.81 23.85 0.23 0.36 16 18 C -0.10 -2.56 4.55 -20.15 -0.09 -2.66 16 19 C -0.06 -1.98 6.58 22.58 0.15 -1.83 16 20 C -0.15 -4.50 10.03 22.23 0.22 -4.28 16 21 C -0.11 -2.70 10.04 22.35 0.22 -2.48 16 22 C -0.14 -2.87 10.03 22.23 0.22 -2.64 16 23 C -0.10 -2.08 9.80 22.58 0.22 -1.86 16 24 H 0.05 1.84 6.05 -2.39 -0.01 1.82 16 25 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 26 H 0.04 1.81 7.75 -2.38 -0.02 1.79 16 27 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.06 2.57 3.21 -2.38 -0.01 2.56 16 29 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 30 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.09 3.17 6.98 -2.91 -0.02 3.15 16 33 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -72.72 295.54 5.90 -66.83 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.99 Total: 14.82 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 3.32 Total: -32.63 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.30 Total: -57.67 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.39 Total: -38.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.14 kcal Total: -72.72 5.90 -66.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.393 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds