Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47450 * 2 1 4 4 N 1.46905 * 109.46944 * 119.99340 * 2 1 3 5 5 C 1.46901 * 111.00128 * 275.00085 * 4 2 1 6 6 C 1.52992 * 109.46801 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47240 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99728 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00285 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00097 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47186 * 90.00173 * 11 9 7 13 13 H 1.48503 * 109.47419 * 210.00157 * 11 9 7 14 14 H 1.48494 * 109.47343 * 330.00167 * 11 9 7 15 15 C 1.50703 * 109.47233 * 239.99543 * 2 1 3 16 16 C 1.34034 * 124.90927 * 100.00150 * 15 2 1 17 17 C 1.46633 * 106.17589 * 180.02562 * 16 15 2 18 18 C 1.39142 * 135.25704 * 179.97438 * 17 16 15 19 19 N 1.31767 * 120.08803 * 180.02562 * 18 17 16 20 20 C 1.32242 * 122.11796 * 0.02562 * 19 18 17 21 21 C 1.37805 * 121.51791 * 359.97438 * 20 19 18 22 22 C 1.39153 * 118.91699 * 0.02562 * 21 20 19 23 23 O 1.34373 * 134.63374 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47304 * 300.00659 * 1 2 3 26 26 H 1.09003 * 109.46768 * 60.00433 * 1 2 3 27 27 H 1.00903 * 110.99725 * 151.04534 * 4 2 1 28 28 H 1.08999 * 109.47012 * 299.99637 * 5 4 2 29 29 H 1.08999 * 109.47039 * 60.00308 * 5 4 2 30 30 H 1.09001 * 109.47539 * 300.00078 * 6 5 4 31 31 H 1.09003 * 109.47333 * 59.99820 * 6 5 4 32 32 H 0.96998 * 119.99623 * 179.97438 * 10 9 7 33 33 H 1.07999 * 126.91661 * 0.02562 * 16 15 2 34 34 H 1.07997 * 119.95074 * 0.04845 * 18 17 16 35 35 H 1.08005 * 119.24174 * 180.27614 * 20 19 18 36 36 H 1.08000 * 120.54011 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0824 0.2228 2.3469 6 6 2.5961 -0.5326 3.5742 7 6 2.6611 0.4063 4.7511 8 1 2.3652 1.4386 4.6354 9 6 3.0974 -0.0526 5.9759 10 7 3.4573 -1.3096 6.1170 11 14 3.1773 1.1112 7.4349 12 1 1.8835 1.0814 8.1633 13 1 4.2691 0.6866 8.3477 14 1 3.4428 2.4907 6.9538 15 6 2.0324 -0.7105 -1.2304 16 6 2.4680 -0.1029 -2.3429 17 6 2.8533 -1.1729 -3.2686 18 6 3.3693 -1.2245 -4.5597 19 7 3.6127 -2.3882 -5.1279 20 6 3.3818 -3.5343 -4.5099 21 6 2.8716 -3.5728 -3.2303 22 6 2.5949 -2.3741 -2.5799 23 8 2.1074 -2.0464 -1.3714 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.9173 -1.1204 1.0289 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6165 2.5525 30 1 1.9201 -1.3564 3.8031 31 1 3.5916 -0.9260 3.3683 32 1 3.7646 -1.6323 6.9785 33 1 2.5241 0.9607 -2.5216 34 1 3.5710 -0.3094 -5.0967 35 1 3.6027 -4.4615 -5.0179 36 1 2.6895 -4.5178 -2.7403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595033122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = 30.344459 kcal Electronic energy + Delta-G solvation = -18294.195157 eV Core-core repulsion = 15358.460410 eV Total energy + Delta-G solvation = -2935.734748 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81745 -39.19293 -36.84025 -33.63068 -32.91541 -31.81451 -31.31790 -29.11481 -28.10742 -24.90339 -23.89308 -23.37165 -21.86160 -20.88866 -20.55928 -18.03266 -17.13634 -16.45681 -16.29290 -16.02802 -15.28750 -14.81544 -14.62433 -14.42853 -14.04041 -13.75246 -13.48828 -13.18708 -12.87153 -12.36859 -12.26724 -11.84299 -11.57046 -11.41047 -11.11312 -10.91948 -10.59635 -10.43059 -10.06745 -9.91746 -9.54454 -9.44761 -9.19757 -8.43005 -8.39410 -8.03151 -6.03098 -4.06304 0.52867 1.09397 2.09494 2.40922 3.29922 3.36194 3.38869 3.56868 4.00105 4.20073 4.35193 4.40536 4.55527 4.77918 4.85685 4.95382 5.20488 5.24676 5.30715 5.32942 5.47206 5.58210 5.74559 5.82443 5.91578 6.08319 6.18316 6.22546 6.26477 6.33847 6.86249 6.91266 7.31566 7.63494 7.70647 7.71479 7.84077 8.02012 8.37626 9.00772 9.57769 11.08276 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038233 B = 0.003414 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.180892 B = 8199.205531 C = 8511.135565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.155 3.845 3 H 0.076 0.924 4 N -0.683 5.683 5 C 0.064 3.936 6 C 0.025 3.975 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.054 3.946 16 C -0.201 4.201 17 C -0.183 4.183 18 C 0.156 3.844 19 N -0.495 5.495 20 C 0.103 3.897 21 C -0.154 4.154 22 C 0.085 3.915 23 O -0.169 6.169 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.342 0.658 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.014 0.986 32 H 0.261 0.739 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -0.111 -20.125 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.094 0.906 4 N -0.315 5.315 5 C -0.063 4.063 6 C -0.012 4.012 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.006 3.994 16 C -0.222 4.222 17 C -0.186 4.186 18 C -0.007 4.007 19 N -0.205 5.205 20 C -0.048 4.048 21 C -0.175 4.175 22 C 0.030 3.970 23 O -0.067 6.067 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.161 0.839 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.868 -0.768 -20.427 20.641 hybrid contribution 0.568 1.172 1.475 1.968 sum -2.300 0.405 -18.951 19.095 Atomic orbital electron populations 1.21839 0.92779 1.03199 1.01913 1.20374 0.96766 0.94286 0.84029 0.90641 1.60740 1.33906 1.33848 1.03047 1.22286 0.99979 0.93464 0.90619 1.19065 0.96320 0.95871 0.89949 1.21149 1.44190 0.96333 0.94538 0.92694 1.25008 0.95338 0.95121 0.98887 1.69974 1.44265 1.14386 1.24501 0.86576 0.77725 0.81085 0.82492 1.20598 1.21207 1.19904 1.22833 0.99005 0.79794 0.97790 1.22170 1.07709 0.99540 0.92768 1.20965 1.06174 0.93712 0.97721 1.22278 0.92363 0.96309 0.89708 1.67754 1.17752 0.98122 1.36863 1.22507 0.94908 0.96676 0.90675 1.21039 1.04585 0.95821 0.96016 1.19840 0.96943 0.95654 0.84555 1.84035 1.67603 1.24111 1.30983 0.91508 0.90991 0.92526 0.83945 0.96253 0.91836 0.95506 0.96772 0.92931 0.81940 0.82167 0.81666 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.40 37.16 0.35 -1.41 16 2 C 0.16 2.15 3.05 -68.86 -0.21 1.94 16 3 H 0.08 0.96 7.78 -51.93 -0.40 0.55 16 4 N -0.68 -11.92 6.28 -107.95 -0.68 -12.60 16 5 C 0.06 1.29 5.42 -3.83 -0.02 1.27 16 6 C 0.03 0.65 5.23 -27.89 -0.15 0.51 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.05 0.73 5.73 -35.79 -0.21 0.53 16 16 C -0.20 -2.36 10.99 -37.67 -0.41 -2.78 16 17 C -0.18 -2.26 6.44 -105.19 -0.68 -2.94 16 18 C 0.16 1.71 11.26 -17.24 -0.19 1.52 16 19 N -0.49 -5.69 10.35 -13.06 -0.14 -5.83 16 20 C 0.10 1.02 11.14 -17.53 -0.20 0.83 16 21 C -0.15 -1.67 10.13 -39.40 -0.40 -2.07 16 22 C 0.09 1.14 7.49 -38.25 -0.29 0.86 16 23 O -0.17 -2.52 10.54 4.86 0.05 -2.47 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.93 7.45 -51.93 -0.39 0.54 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.34 6.06 8.35 -39.29 -0.33 5.74 16 28 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 29 H 0.06 1.25 7.44 -51.93 -0.39 0.87 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -31.56 312.09 -8.00 -39.56 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.85 Total: 1.39 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.81 Total: -15.15 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.08 Total: -44.48 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: 0.05 Total: -2.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.56 -8.00 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595033122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.902 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds