Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47450 * 2 1 4 4 N 1.46905 * 109.46944 * 119.99340 * 2 1 3 5 5 C 1.46901 * 111.00128 * 275.00085 * 4 2 1 6 6 C 1.52992 * 109.46801 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47240 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99728 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00285 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00097 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47186 * 90.00173 * 11 9 7 13 13 H 1.48503 * 109.47419 * 210.00157 * 11 9 7 14 14 H 1.48494 * 109.47343 * 330.00167 * 11 9 7 15 15 C 1.50703 * 109.47233 * 239.99543 * 2 1 3 16 16 C 1.34034 * 124.90927 * 100.00150 * 15 2 1 17 17 C 1.46633 * 106.17589 * 180.02562 * 16 15 2 18 18 C 1.39142 * 135.25704 * 179.97438 * 17 16 15 19 19 N 1.31767 * 120.08803 * 180.02562 * 18 17 16 20 20 C 1.32242 * 122.11796 * 0.02562 * 19 18 17 21 21 C 1.37805 * 121.51791 * 359.97438 * 20 19 18 22 22 C 1.39153 * 118.91699 * 0.02562 * 21 20 19 23 23 O 1.34373 * 134.63374 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47304 * 300.00659 * 1 2 3 26 26 H 1.09003 * 109.46768 * 60.00433 * 1 2 3 27 27 H 1.00903 * 110.99725 * 151.04534 * 4 2 1 28 28 H 1.08999 * 109.47012 * 299.99637 * 5 4 2 29 29 H 1.08999 * 109.47039 * 60.00308 * 5 4 2 30 30 H 1.09001 * 109.47539 * 300.00078 * 6 5 4 31 31 H 1.09003 * 109.47333 * 59.99820 * 6 5 4 32 32 H 0.96998 * 119.99623 * 179.97438 * 10 9 7 33 33 H 1.07999 * 126.91661 * 0.02562 * 16 15 2 34 34 H 1.07997 * 119.95074 * 0.04845 * 18 17 16 35 35 H 1.08005 * 119.24174 * 180.27614 * 20 19 18 36 36 H 1.08000 * 120.54011 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0824 0.2228 2.3469 6 6 2.5961 -0.5326 3.5742 7 6 2.6611 0.4063 4.7511 8 1 2.3652 1.4386 4.6354 9 6 3.0974 -0.0526 5.9759 10 7 3.4573 -1.3096 6.1170 11 14 3.1773 1.1112 7.4349 12 1 1.8835 1.0814 8.1633 13 1 4.2691 0.6866 8.3477 14 1 3.4428 2.4907 6.9538 15 6 2.0324 -0.7105 -1.2304 16 6 2.4680 -0.1029 -2.3429 17 6 2.8533 -1.1729 -3.2686 18 6 3.3693 -1.2245 -4.5597 19 7 3.6127 -2.3882 -5.1279 20 6 3.3818 -3.5343 -4.5099 21 6 2.8716 -3.5728 -3.2303 22 6 2.5949 -2.3741 -2.5799 23 8 2.1074 -2.0464 -1.3714 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.9173 -1.1204 1.0289 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6165 2.5525 30 1 1.9201 -1.3564 3.8031 31 1 3.5916 -0.9260 3.3683 32 1 3.7646 -1.6323 6.9785 33 1 2.5241 0.9607 -2.5216 34 1 3.5710 -0.3094 -5.0967 35 1 3.6027 -4.4615 -5.0179 36 1 2.6895 -4.5178 -2.7403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595033122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = 9.649195 kcal Electronic energy + Delta-G solvation = -18295.092571 eV Core-core repulsion = 15358.460410 eV Total energy + Delta-G solvation = -2936.632162 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.75062 -40.05693 -38.16876 -35.42877 -34.10056 -32.99937 -32.49545 -30.34350 -29.50835 -26.43676 -25.12314 -24.38471 -22.96721 -22.22199 -21.91306 -18.90764 -18.60252 -18.06655 -17.43618 -16.89601 -16.58581 -16.36077 -15.91091 -15.52272 -15.31251 -14.66786 -14.55687 -14.39457 -14.15314 -14.03516 -13.61843 -13.04341 -12.92464 -12.87094 -12.56696 -12.47214 -12.33296 -11.88494 -11.46857 -11.32515 -11.23875 -10.76031 -10.57450 -10.43138 -9.42645 -9.31733 -8.20846 -6.32711 -0.31811 0.19327 1.18061 1.40942 1.42503 1.49898 1.53401 2.40081 2.73314 3.00026 3.12991 3.31176 3.44354 3.53300 3.91323 3.97464 4.05795 4.20556 4.30985 4.42807 4.50478 4.57032 4.69498 4.73306 4.83407 4.86650 4.98282 5.04108 5.21789 5.29772 5.42037 5.46741 5.63742 5.75521 5.93212 6.08603 6.22157 6.37399 6.85017 6.89220 7.36993 8.91471 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038233 B = 0.003414 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.180892 B = 8199.205531 C = 8511.135565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.095 0.905 4 N -0.694 5.694 5 C 0.084 3.916 6 C 0.030 3.970 7 C -0.543 4.543 8 H 0.065 0.935 9 C -0.002 4.002 10 N -0.934 5.934 11 Si 0.968 3.032 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.026 3.974 16 C -0.180 4.180 17 C -0.200 4.200 18 C 0.159 3.841 19 N -0.511 5.511 20 C 0.109 3.891 21 C -0.165 4.165 22 C 0.058 3.942 23 O -0.195 6.195 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.338 0.662 28 H 0.028 0.972 29 H 0.069 0.931 30 H -0.007 1.007 31 H -0.013 1.013 32 H 0.263 0.737 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 1.541 -21.422 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 H 0.113 0.887 4 N -0.326 5.326 5 C -0.044 4.044 6 C -0.007 4.007 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.574 5.574 11 Si 0.793 3.207 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.184 1.184 15 C -0.021 4.021 16 C -0.201 4.201 17 C -0.203 4.203 18 C -0.004 4.004 19 N -0.221 5.221 20 C -0.041 4.041 21 C -0.185 4.185 22 C 0.003 3.997 23 O -0.095 6.095 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.155 0.845 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.210 0.790 34 H 0.207 0.793 35 H 0.216 0.784 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.912 0.896 -21.749 21.961 hybrid contribution 0.598 0.568 1.752 1.936 sum -2.314 1.464 -19.997 20.183 Atomic orbital electron populations 1.21823 0.91993 1.02479 1.03028 1.20427 0.97302 0.94823 0.82568 0.88740 1.60626 1.33751 1.34034 1.04165 1.21888 0.99998 0.93058 0.89488 1.18922 0.94232 0.95164 0.92388 1.21618 1.43920 0.97100 0.95487 0.91660 1.26013 0.94790 0.96840 1.02300 1.70122 1.45271 1.16560 1.25417 0.85399 0.77902 0.79115 0.78326 1.19761 1.20943 1.18424 1.22793 1.01279 0.79646 0.98400 1.22525 1.05223 1.00752 0.91572 1.21204 1.07079 0.93537 0.98473 1.22759 0.91091 0.97307 0.89209 1.67850 1.18281 0.98725 1.37280 1.23081 0.93211 0.97580 0.90222 1.21374 1.04712 0.95940 0.96478 1.20361 0.97661 0.97175 0.84454 1.83978 1.68434 1.25022 1.32053 0.93151 0.91388 0.89806 0.84468 0.95351 0.91213 0.98896 0.99423 0.92792 0.78975 0.79328 0.78368 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.40 71.98 0.68 -2.61 16 2 C 0.16 4.23 3.05 44.17 0.13 4.36 16 3 H 0.10 2.18 7.78 -2.39 -0.02 2.16 16 4 N -0.69 -24.56 6.28 -495.45 -3.11 -27.67 16 5 C 0.08 3.39 5.42 86.30 0.47 3.86 16 6 C 0.03 1.62 5.23 29.85 0.16 1.78 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 10 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 11 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 C 0.03 0.69 5.73 24.73 0.14 0.84 16 16 C -0.18 -3.89 10.99 23.50 0.26 -3.64 16 17 C -0.20 -4.67 6.44 -20.23 -0.13 -4.80 16 18 C 0.16 3.14 11.26 84.92 0.96 4.10 16 19 N -0.51 -10.72 10.35 -195.23 -2.02 -12.74 16 20 C 0.11 1.97 11.14 84.53 0.94 2.91 16 21 C -0.16 -3.45 10.13 22.39 0.23 -3.23 16 22 C 0.06 1.55 7.49 23.13 0.17 1.72 16 23 O -0.20 -5.92 10.54 -5.51 -0.06 -5.98 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.68 7.45 -2.39 -0.02 1.66 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.34 12.39 8.35 -89.69 -0.75 11.64 16 28 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 29 H 0.07 2.72 7.44 -2.39 -0.02 2.70 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.42 312.09 2.15 -67.27 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.33 Total: 14.99 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.70 Total: -24.77 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -4.85 Total: -97.51 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.06 Total: -5.98 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.42 2.15 -67.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595033122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.920 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds