Wall clock time and date at job start Mon Mar 30 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47100 * 2 1 4 4 C 1.50690 * 109.47408 * 120.00533 * 2 1 3 5 5 H 1.08008 * 120.00147 * 119.99972 * 4 2 1 6 6 C 1.37880 * 120.00217 * 299.99550 * 4 2 1 7 7 N 1.31521 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47080 * 90.00431 * 8 6 4 10 10 H 1.48496 * 109.47076 * 210.00324 * 8 6 4 11 11 H 1.48500 * 109.46733 * 330.00154 * 8 6 4 12 12 C 1.50701 * 109.46637 * 240.00822 * 2 1 3 13 13 O 1.21273 * 119.99682 * 239.99701 * 12 2 1 14 14 N 1.34778 * 120.00649 * 59.99661 * 12 2 1 15 15 C 1.39407 * 120.00306 * 174.90598 * 14 12 2 16 16 C 1.39039 * 119.69321 * 185.12428 * 15 14 12 17 17 C 1.38367 * 119.09641 * 179.75065 * 16 15 14 18 18 C 1.38843 * 118.49318 * 0.51968 * 17 16 15 19 19 C 1.38075 * 119.30949 * 359.74252 * 18 17 16 20 20 C 1.50699 * 119.57242 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49871 * 343.73035 * 20 19 18 22 22 C 1.53002 * 117.50210 * 275.07050 * 20 19 18 23 23 N 1.31927 * 120.85241 * 359.97438 * 19 18 17 24 24 H 1.08998 * 109.46618 * 299.99697 * 1 2 3 25 25 H 1.08996 * 109.47277 * 59.99616 * 1 2 3 26 26 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99517 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99522 * 354.91077 * 14 12 2 29 29 H 1.07990 * 120.45114 * 0.02562 * 16 15 14 30 30 H 1.07991 * 120.75301 * 180.24221 * 17 16 15 31 31 H 1.07999 * 120.34230 * 179.77003 * 18 17 16 32 32 H 1.08998 * 115.54927 * 129.39703 * 20 19 18 33 33 H 1.09005 * 117.50161 * 359.97438 * 21 20 19 34 34 H 1.09001 * 117.49840 * 145.02282 * 21 20 19 35 35 H 1.08998 * 117.49980 * 214.98264 * 22 20 19 36 36 H 1.09004 * 117.49734 * 359.97195 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5886 1.1311 6 6 1.6995 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3228 -1.1198 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3448 -0.9493 5.1121 11 1 2.4883 -2.5656 3.7118 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6963 -1.1195 14 7 1.7066 -0.2498 -2.4547 15 6 2.2563 -0.8414 -3.5910 16 6 2.0010 -0.2951 -4.8439 17 6 2.5571 -0.8893 -5.9630 18 6 3.3436 -2.0204 -5.7906 19 6 3.5505 -2.5121 -4.5170 20 6 4.4036 -3.7391 -4.3231 21 6 4.6893 -4.6027 -5.5533 22 6 3.7254 -5.1023 -4.4742 23 7 3.0119 -1.9210 -3.4678 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7084 1.1606 3.4845 28 1 1.0898 0.4935 -2.5450 29 1 1.3809 0.5835 -4.9418 30 1 2.3796 -0.4851 -6.9485 31 1 3.7892 -2.5103 -6.6437 32 1 5.1929 -3.6497 -3.5767 33 1 4.2598 -4.2835 -6.5030 34 1 5.6663 -5.0817 -5.6161 35 1 4.0688 -5.9097 -3.8275 36 1 2.6620 -5.1116 -4.7135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597694524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:17 Heat of formation + Delta-G solvation = 32.864146 kcal Electronic energy + Delta-G solvation = -18873.459676 eV Core-core repulsion = 15937.834190 eV Total energy + Delta-G solvation = -2935.625486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49416 -38.66726 -36.86800 -34.07846 -33.76128 -32.18953 -30.69974 -29.19365 -25.16721 -24.55887 -23.93582 -22.48695 -21.83613 -20.73161 -19.41824 -17.44741 -16.43584 -16.16962 -15.97777 -15.57373 -14.84648 -14.69485 -14.38541 -14.34334 -13.35621 -13.28866 -12.94747 -12.51098 -12.20875 -11.86602 -11.57476 -11.38996 -11.01838 -10.88638 -10.73843 -10.71518 -10.46471 -10.33197 -10.06921 -9.97470 -9.43543 -9.29757 -9.00585 -8.46359 -8.19115 -7.86147 -6.04785 -4.07904 1.28470 1.53518 3.34220 3.38460 3.40444 3.49132 3.56144 3.83093 4.18498 4.38696 4.47925 4.79694 4.89378 4.99839 5.17645 5.22139 5.27771 5.28962 5.41908 5.57865 5.75774 5.87828 5.91842 6.05677 6.10643 6.26936 6.34895 6.55071 6.59150 6.77385 6.87157 7.14872 7.42698 7.67722 7.82555 8.02064 8.24477 8.55074 9.01233 9.18036 9.57889 11.02952 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.005047 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.738614 B = 5546.601707 C = 6433.334165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.504 3.496 13 O -0.472 6.472 14 N -0.671 5.671 15 C 0.379 3.621 16 C -0.227 4.227 17 C -0.046 4.046 18 C -0.221 4.221 19 C 0.192 3.808 20 C -0.102 4.102 21 C -0.175 4.175 22 C -0.160 4.160 23 N -0.470 5.470 24 H 0.096 0.904 25 H 0.011 0.989 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.413 0.587 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -3.383 -17.480 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.293 3.707 13 O -0.339 6.339 14 N -0.318 5.318 15 C 0.147 3.853 16 C -0.251 4.251 17 C -0.072 4.072 18 C -0.243 4.243 19 C 0.052 3.948 20 C -0.121 4.121 21 C -0.213 4.213 22 C -0.197 4.197 23 N -0.185 5.185 24 H 0.114 0.886 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.249 0.751 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.555 -4.296 -16.235 16.987 hybrid contribution -0.271 0.513 -0.053 0.583 sum 2.284 -3.783 -16.288 16.877 Atomic orbital electron populations 1.21776 0.96428 1.00002 1.01042 1.18927 0.94231 0.96895 0.88865 0.92735 1.21128 1.31075 1.12886 0.88859 0.90679 1.24942 0.95041 0.95063 0.99130 1.69869 1.37028 1.23127 1.23605 0.86426 0.78441 0.80295 0.81932 1.20640 1.21276 1.19694 1.22386 0.79613 0.84979 0.83739 1.90648 1.33945 1.23921 1.85373 1.44424 1.46769 1.35874 1.04733 1.18728 0.90632 0.89379 0.86576 1.21474 1.07463 1.04210 0.91944 1.21228 0.93801 0.93941 0.98266 1.21713 1.04624 0.99802 0.98161 1.20197 0.92809 0.93756 0.87997 1.20749 1.01123 0.88796 1.01431 1.23092 1.01106 1.03406 0.93652 1.22926 0.98685 0.96285 1.01833 1.67461 1.10154 1.08061 1.32850 0.88587 0.96976 0.94820 0.92920 0.75068 0.84947 0.84964 0.85201 0.86043 0.88419 0.88262 0.88225 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.86 37.16 0.33 -2.73 16 2 C 0.03 0.80 2.65 -92.93 -0.25 0.55 16 3 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.28 8.37 -34.44 -0.29 -14.56 16 5 H 0.08 2.27 6.75 -52.48 -0.35 1.92 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.50 11.88 7.11 -10.98 -0.08 11.81 16 13 O -0.47 -12.77 13.72 5.56 0.08 -12.69 16 14 N -0.67 -12.53 5.31 -11.42 -0.06 -12.59 16 15 C 0.38 6.84 7.42 -154.70 -1.15 5.69 16 16 C -0.23 -3.08 9.94 -39.24 -0.39 -3.47 16 17 C -0.05 -0.55 10.17 -39.31 -0.40 -0.95 16 18 C -0.22 -2.82 9.36 -39.42 -0.37 -3.19 16 19 C 0.19 3.08 6.46 -82.61 -0.53 2.55 16 20 C -0.10 -1.42 6.21 -91.77 -0.57 -1.99 16 21 C -0.18 -1.73 9.79 -26.69 -0.26 -1.99 16 22 C -0.16 -1.91 10.24 -26.69 -0.27 -2.18 16 23 N -0.47 -9.39 7.80 -8.60 -0.07 -9.45 16 24 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.21 7.46 -51.93 -0.39 -0.17 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 28 H 0.41 6.19 7.98 -40.82 -0.33 5.86 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.28 6.24 -52.49 -0.33 0.95 16 32 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.10 0.84 6.38 -51.93 -0.33 0.51 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -33.08 305.06 -8.73 -41.81 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.56 Total: 4.78 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -4.32 Total: -8.92 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.50 Total: -46.51 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.08 -8.73 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.675 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds