Wall clock time and date at job start Mon Mar 30 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47100 * 2 1 4 4 C 1.50690 * 109.47408 * 120.00533 * 2 1 3 5 5 H 1.08008 * 120.00147 * 119.99972 * 4 2 1 6 6 C 1.37880 * 120.00217 * 299.99550 * 4 2 1 7 7 N 1.31521 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47080 * 90.00431 * 8 6 4 10 10 H 1.48496 * 109.47076 * 210.00324 * 8 6 4 11 11 H 1.48500 * 109.46733 * 330.00154 * 8 6 4 12 12 C 1.50701 * 109.46637 * 240.00822 * 2 1 3 13 13 O 1.21273 * 119.99682 * 239.99701 * 12 2 1 14 14 N 1.34778 * 120.00649 * 59.99661 * 12 2 1 15 15 C 1.39407 * 120.00306 * 174.90598 * 14 12 2 16 16 C 1.39039 * 119.69321 * 185.12428 * 15 14 12 17 17 C 1.38367 * 119.09641 * 179.75065 * 16 15 14 18 18 C 1.38843 * 118.49318 * 0.51968 * 17 16 15 19 19 C 1.38075 * 119.30949 * 359.74252 * 18 17 16 20 20 C 1.50699 * 119.57242 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49871 * 343.73035 * 20 19 18 22 22 C 1.53002 * 117.50210 * 275.07050 * 20 19 18 23 23 N 1.31927 * 120.85241 * 359.97438 * 19 18 17 24 24 H 1.08998 * 109.46618 * 299.99697 * 1 2 3 25 25 H 1.08996 * 109.47277 * 59.99616 * 1 2 3 26 26 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99517 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99522 * 354.91077 * 14 12 2 29 29 H 1.07990 * 120.45114 * 0.02562 * 16 15 14 30 30 H 1.07991 * 120.75301 * 180.24221 * 17 16 15 31 31 H 1.07999 * 120.34230 * 179.77003 * 18 17 16 32 32 H 1.08998 * 115.54927 * 129.39703 * 20 19 18 33 33 H 1.09005 * 117.50161 * 359.97438 * 21 20 19 34 34 H 1.09001 * 117.49840 * 145.02282 * 21 20 19 35 35 H 1.08998 * 117.49980 * 214.98264 * 22 20 19 36 36 H 1.09004 * 117.49734 * 359.97195 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5886 1.1311 6 6 1.6995 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3228 -1.1198 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3448 -0.9493 5.1121 11 1 2.4883 -2.5656 3.7118 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6963 -1.1195 14 7 1.7066 -0.2498 -2.4547 15 6 2.2563 -0.8414 -3.5910 16 6 2.0010 -0.2951 -4.8439 17 6 2.5571 -0.8893 -5.9630 18 6 3.3436 -2.0204 -5.7906 19 6 3.5505 -2.5121 -4.5170 20 6 4.4036 -3.7391 -4.3231 21 6 4.6893 -4.6027 -5.5533 22 6 3.7254 -5.1023 -4.4742 23 7 3.0119 -1.9210 -3.4678 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7084 1.1606 3.4845 28 1 1.0898 0.4935 -2.5450 29 1 1.3809 0.5835 -4.9418 30 1 2.3796 -0.4851 -6.9485 31 1 3.7892 -2.5103 -6.6437 32 1 5.1929 -3.6497 -3.5767 33 1 4.2598 -4.2835 -6.5030 34 1 5.6663 -5.0817 -5.6161 35 1 4.0688 -5.9097 -3.8275 36 1 2.6620 -5.1116 -4.7135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597694524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:17 Heat of formation + Delta-G solvation = 12.222354 kcal Electronic energy + Delta-G solvation = -18874.354771 eV Core-core repulsion = 15937.834190 eV Total energy + Delta-G solvation = -2936.520581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76485 -40.21138 -37.94749 -35.81290 -35.56000 -33.32989 -32.60127 -30.50316 -27.24391 -25.72352 -25.32797 -23.75663 -23.00197 -21.87252 -21.05505 -18.79985 -18.22468 -17.74237 -17.37584 -16.70356 -16.49747 -16.07521 -15.98322 -15.51642 -14.98369 -14.80230 -14.32934 -14.15231 -13.50061 -13.17266 -13.00412 -12.87398 -12.72281 -12.60267 -12.29699 -12.24150 -12.04826 -11.95567 -11.40441 -11.29669 -11.09234 -10.84960 -10.56004 -10.51164 -9.77877 -9.11416 -8.18327 -6.28547 0.15325 0.47222 1.38711 1.39083 1.51397 1.92310 2.06445 2.43308 2.76743 3.00804 3.11453 3.34956 3.88249 3.94368 4.04688 4.15674 4.21031 4.26394 4.36204 4.50587 4.70062 4.74938 4.82509 4.88723 4.94312 4.96443 5.03907 5.18115 5.26140 5.31316 5.42844 5.45731 5.70760 5.85895 5.97098 6.15136 6.44837 6.78376 7.22349 7.37478 7.56942 8.87627 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.005047 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.738614 B = 5546.601707 C = 6433.334165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.508 3.492 13 O -0.521 6.521 14 N -0.659 5.659 15 C 0.336 3.664 16 C -0.212 4.212 17 C -0.039 4.039 18 C -0.204 4.204 19 C 0.162 3.838 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.170 4.170 23 N -0.529 5.529 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.266 0.734 28 H 0.429 0.571 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 -2.906 -20.549 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.007 3.993 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.297 3.703 13 O -0.393 6.393 14 N -0.308 5.308 15 C 0.105 3.895 16 C -0.235 4.235 17 C -0.064 4.064 18 C -0.225 4.225 19 C 0.024 3.976 20 C -0.157 4.157 21 C -0.169 4.169 22 C -0.208 4.208 23 N -0.244 5.244 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.268 0.732 29 H 0.185 0.815 30 H 0.200 0.800 31 H 0.184 0.816 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.241 -3.790 -19.361 19.855 hybrid contribution -0.147 0.360 0.761 0.855 sum 2.093 -3.430 -18.599 19.028 Atomic orbital electron populations 1.21582 0.94702 0.99470 1.02118 1.18845 0.95579 0.95955 0.88885 0.93611 1.21237 1.31777 1.12747 0.91133 0.93672 1.25560 0.95109 0.95744 1.01288 1.69936 1.36975 1.23465 1.24417 0.85596 0.78480 0.78653 0.79160 1.19977 1.19599 1.20659 1.21981 0.79039 0.84244 0.85034 1.90621 1.36267 1.25966 1.86414 1.43900 1.46929 1.36131 1.03813 1.19053 0.92535 0.90479 0.87459 1.21849 1.06719 1.04581 0.90345 1.21840 0.91970 0.92889 0.99738 1.22153 1.03191 0.99514 0.97651 1.20613 0.93600 0.94595 0.88769 1.20794 1.01408 0.89397 1.04111 1.23230 1.01307 0.99664 0.92720 1.22976 0.98910 0.95350 1.03564 1.67254 1.11660 1.09711 1.35784 0.90665 0.92575 0.96022 0.92460 0.73180 0.81533 0.79970 0.81592 0.88519 0.86158 0.86170 0.88012 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.86 71.98 0.64 -4.91 16 2 C 0.03 1.48 2.65 -12.29 -0.03 1.45 16 3 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.53 -31.61 8.37 25.60 0.21 -31.40 16 5 H 0.04 2.91 6.75 -2.91 -0.02 2.89 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 12 C 0.51 25.03 7.11 87.66 0.62 25.65 16 13 O -0.52 -30.13 13.72 -3.01 -0.04 -30.17 16 14 N -0.66 -24.82 5.31 -308.45 -1.64 -26.46 16 15 C 0.34 12.02 7.42 132.92 0.99 13.01 16 16 C -0.21 -5.09 9.94 22.49 0.22 -4.87 16 17 C -0.04 -0.73 10.17 22.45 0.23 -0.51 16 18 C -0.20 -4.51 9.36 22.38 0.21 -4.30 16 19 C 0.16 5.17 6.46 42.51 0.27 5.45 16 20 C -0.14 -3.88 6.21 -11.54 -0.07 -3.95 16 21 C -0.13 -2.27 9.79 30.62 0.30 -1.97 16 22 C -0.17 -4.04 10.24 30.62 0.31 -3.73 16 23 N -0.53 -21.76 7.80 -181.12 -1.41 -23.17 16 24 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 25 H 0.06 2.02 7.46 -2.39 -0.02 2.00 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.43 12.44 7.98 -92.71 -0.74 11.70 16 29 H 0.17 2.75 8.06 -2.92 -0.02 2.73 16 30 H 0.18 1.68 8.06 -2.92 -0.02 1.65 16 31 H 0.17 2.37 6.24 -2.91 -0.02 2.36 16 32 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.12 1.51 6.38 -2.38 -0.02 1.50 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.14 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -77.62 305.06 3.89 -73.73 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.36 Total: 17.60 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.36 Total: -8.36 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -2.81 Total: -100.73 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.04 Total: -30.17 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.62 3.89 -73.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.948 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds