Wall clock time and date at job start Mon Mar 30 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47357 * 2 1 4 4 C 1.50708 * 109.47281 * 119.99739 * 2 1 3 5 5 H 1.07996 * 119.99871 * 119.99357 * 4 2 1 6 6 C 1.37876 * 119.99602 * 300.00652 * 4 2 1 7 7 N 1.31515 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47423 * 89.99485 * 8 6 4 10 10 H 1.48500 * 109.46879 * 209.99645 * 8 6 4 11 11 H 1.48491 * 109.47020 * 329.99387 * 8 6 4 12 12 C 1.50696 * 109.47288 * 239.99464 * 2 1 3 13 13 O 1.21274 * 120.00206 * 239.99994 * 12 2 1 14 14 N 1.34783 * 119.99638 * 60.00657 * 12 2 1 15 15 C 1.39401 * 119.99680 * 174.91064 * 14 12 2 16 16 C 1.39070 * 119.72538 * 185.12337 * 15 14 12 17 17 C 1.38317 * 119.04768 * 179.77272 * 16 15 14 18 18 C 1.38699 * 118.68042 * 0.49412 * 17 16 15 19 19 C 1.38206 * 119.16708 * 359.74540 * 18 17 16 20 20 N 1.31896 * 120.85912 * 0.02562 * 19 18 17 21 21 C 1.51212 * 109.63679 * 179.74201 * 18 17 16 22 22 C 1.54389 * 105.21128 * 17.10371 * 21 18 17 23 23 C 1.51066 * 131.47312 * 180.19578 * 17 16 15 24 24 H 1.09003 * 109.46998 * 60.00156 * 1 2 3 25 25 H 1.09003 * 109.47111 * 300.00437 * 1 2 3 26 26 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 27 27 H 0.97008 * 119.99780 * 179.97438 * 7 6 4 28 28 H 0.96997 * 119.99804 * 354.89982 * 14 12 2 29 29 H 1.07994 * 120.47317 * 359.97438 * 16 15 14 30 30 H 1.07996 * 119.56940 * 180.02562 * 19 18 17 31 31 H 1.08999 * 110.30039 * 136.03891 * 21 18 17 32 32 H 1.09003 * 110.29645 * 258.07365 * 21 18 17 33 33 H 1.08997 * 110.80361 * 92.02508 * 22 21 18 34 34 H 1.09003 * 110.80221 * 215.33342 * 22 21 18 35 35 H 1.08998 * 110.30821 * 44.29121 * 23 17 16 36 36 H 1.09000 * 110.30491 * 282.13557 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1120 11 1 2.4858 -2.5660 3.7121 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1190 14 7 1.7069 -0.2500 -2.4545 15 6 2.2565 -0.8419 -3.5907 16 6 2.0019 -0.2962 -4.8442 17 6 2.5582 -0.8920 -5.9617 18 6 3.3442 -2.0221 -5.7917 19 6 3.5510 -2.5132 -4.5165 20 7 3.0116 -1.9219 -3.4681 21 6 3.8384 -2.5043 -7.1370 22 6 3.6356 -1.3105 -8.0948 23 6 2.4738 -0.5418 -7.4288 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7087 1.1614 3.4844 28 1 1.0900 0.4931 -2.5449 29 1 1.3813 0.5821 -4.9434 30 1 4.1622 -3.3925 -4.3767 31 1 4.8945 -2.7677 -7.0796 32 1 3.2531 -3.3616 -7.4698 33 1 4.5328 -0.6933 -8.1396 34 1 3.3550 -1.6559 -9.0899 35 1 2.6007 0.5316 -7.5694 36 1 1.5189 -0.8678 -7.8411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597700770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:09 Heat of formation + Delta-G solvation = 0.115021 kcal Electronic energy + Delta-G solvation = -18788.909691 eV Core-core repulsion = 15851.864096 eV Total energy + Delta-G solvation = -2937.045594 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73491 -38.86937 -36.48885 -33.94125 -33.74319 -31.42756 -30.49734 -29.18635 -27.24441 -25.15716 -23.51029 -23.23038 -21.11740 -20.98954 -19.30684 -17.38001 -16.51559 -16.10147 -15.84031 -15.23862 -14.94893 -14.55212 -14.39964 -14.13269 -13.28284 -13.12221 -13.03036 -12.83147 -12.49639 -12.14909 -11.61984 -11.44720 -11.36959 -11.23492 -11.01012 -10.75234 -10.71828 -10.32903 -9.98548 -9.96407 -9.36702 -9.28733 -9.00372 -8.47329 -8.21902 -7.77723 -6.04563 -4.07750 1.33464 1.48354 3.34641 3.39765 3.42370 3.51269 3.59993 4.19604 4.32100 4.41253 4.46657 4.78746 4.82792 5.04264 5.07259 5.29075 5.30225 5.44377 5.53324 5.55754 5.61046 5.76126 5.90492 5.94600 6.03627 6.18087 6.43309 6.56040 6.61516 6.77608 6.87346 7.15974 7.42934 7.67660 7.82413 8.02212 8.24349 8.54784 9.01511 9.17813 9.58081 11.03169 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048874 B = 0.004140 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.767717 B = 6762.075989 C = 7215.212817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.505 3.495 13 O -0.474 6.474 14 N -0.670 5.670 15 C 0.375 3.625 16 C -0.209 4.209 17 C -0.031 4.031 18 C -0.204 4.204 19 C 0.148 3.852 20 N -0.473 5.473 21 C -0.068 4.068 22 C -0.120 4.120 23 C -0.081 4.081 24 H 0.011 0.989 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.413 0.587 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -0.718 -20.214 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.540 4.540 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.294 3.706 13 O -0.341 6.341 14 N -0.317 5.317 15 C 0.143 3.857 16 C -0.232 4.232 17 C -0.040 4.040 18 C -0.208 4.208 19 C -0.011 4.011 20 N -0.187 5.187 21 C -0.106 4.106 22 C -0.158 4.158 23 C -0.118 4.118 24 H 0.030 0.970 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.249 0.751 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.814 -1.639 -18.962 19.119 hybrid contribution -0.272 0.424 0.013 0.504 sum 1.542 -1.215 -18.949 19.051 Atomic orbital electron populations 1.21778 0.96412 1.00028 1.01051 1.18930 0.94243 0.96904 0.88834 0.92702 1.21137 1.31100 1.12910 0.88862 0.90647 1.24942 0.95036 0.95063 0.99142 1.69868 1.37049 1.23101 1.23618 0.86422 0.78432 0.80309 0.81907 1.20633 1.21282 1.19674 1.22386 0.79567 0.84955 0.83707 1.90642 1.34057 1.24010 1.85383 1.44372 1.46773 1.35905 1.04659 1.18671 0.91011 0.89717 0.86290 1.20874 1.07446 1.04123 0.90802 1.20496 0.94150 0.94348 0.94957 1.21370 1.03912 0.99385 0.96094 1.22145 0.95172 0.97660 0.86104 1.67871 1.10325 1.08270 1.32267 1.20832 1.01223 0.97992 0.90563 1.22310 0.98308 0.96743 0.98394 1.21020 0.99644 1.01035 0.90118 0.96956 0.88584 0.94796 0.92914 0.75104 0.85159 0.83129 0.90882 0.90611 0.90972 0.90567 0.90417 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.86 37.16 0.33 -2.75 16 2 C 0.03 0.80 2.65 -92.92 -0.25 0.56 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.34 8.37 -34.44 -0.29 -14.62 16 5 H 0.08 2.28 6.75 -52.49 -0.35 1.93 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.51 11.97 7.11 -10.98 -0.08 11.89 16 13 O -0.47 -12.88 13.73 5.56 0.08 -12.81 16 14 N -0.67 -12.61 5.31 -11.42 -0.06 -12.67 16 15 C 0.38 6.83 7.42 -154.70 -1.15 5.68 16 16 C -0.21 -2.95 9.95 -39.24 -0.39 -3.34 16 17 C -0.03 -0.40 6.20 -104.24 -0.65 -1.04 16 18 C -0.20 -2.64 6.18 -104.21 -0.64 -3.29 16 19 C 0.15 2.34 11.18 -17.54 -0.20 2.14 16 20 N -0.47 -9.46 7.89 -12.34 -0.10 -9.56 16 21 C -0.07 -0.62 6.76 -26.90 -0.18 -0.80 16 22 C -0.12 -0.90 7.08 -25.27 -0.18 -1.08 16 23 C -0.08 -0.71 6.76 -26.97 -0.18 -0.89 16 24 H 0.01 0.22 7.46 -51.93 -0.39 -0.17 16 25 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.41 6.25 7.98 -40.82 -0.33 5.93 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -33.25 300.76 -8.63 -41.89 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.75 Total: 2.18 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.95 Total: -6.01 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.47 Total: -46.74 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.25 -8.63 -41.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597700770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.001 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds