Wall clock time and date at job start Mon Mar 30 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46857 * 2 1 4 4 C 1.50697 * 109.47014 * 240.00067 * 2 1 3 5 5 H 1.08003 * 120.00525 * 239.99723 * 4 2 1 6 6 C 1.37886 * 119.99858 * 59.99921 * 4 2 1 7 7 N 1.31507 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00025 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46911 * 59.99681 * 8 6 4 10 10 H 1.48497 * 109.47278 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47094 * 300.00239 * 8 6 4 12 12 C 1.50694 * 109.47321 * 120.00110 * 2 1 3 13 13 O 1.21279 * 120.00050 * 119.99910 * 12 2 1 14 14 N 1.34780 * 119.99932 * 299.99910 * 12 2 1 15 15 C 1.39406 * 119.99991 * 185.08229 * 14 12 2 16 16 C 1.39034 * 119.68415 * 174.89977 * 15 14 12 17 17 C 1.38294 * 118.92982 * 180.02562 * 16 15 14 18 18 C 1.38942 * 118.65933 * 0.02562 * 17 16 15 19 19 C 1.38074 * 119.46754 * 0.02562 * 18 17 16 20 20 N 1.32174 * 119.68286 * 354.93006 * 15 14 12 21 21 C 1.51493 * 109.60524 * 179.97438 * 19 18 17 22 22 C 1.54592 * 105.22773 * 17.22750 * 21 19 18 23 23 C 1.51252 * 130.57497 * 180.02562 * 18 17 16 24 24 H 1.08994 * 109.47141 * 59.99696 * 1 2 3 25 25 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46781 * 299.99739 * 1 2 3 27 27 H 0.97007 * 120.00427 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00063 * 5.08941 * 14 12 2 29 29 H 1.08003 * 120.53935 * 0.04024 * 16 15 14 30 30 H 1.07995 * 120.67116 * 179.97438 * 17 16 15 31 31 H 1.09006 * 110.29453 * 136.14435 * 21 19 18 32 32 H 1.08998 * 110.29713 * 258.17851 * 21 19 18 33 33 H 1.09001 * 110.91294 * 215.44867 * 22 21 19 34 34 H 1.08996 * 110.85735 * 91.80719 * 22 21 19 35 35 H 1.08998 * 110.31467 * 281.75861 * 23 18 17 36 36 H 1.09005 * 110.31630 * 43.84671 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6964 1.1191 14 7 1.7069 -0.2499 2.4545 15 6 2.2564 -0.8418 3.5908 16 6 2.0008 -0.2958 4.8436 17 6 2.5543 -0.8953 5.9602 18 6 3.3473 -2.0230 5.7870 19 6 3.5620 -2.5134 4.5143 20 7 3.0160 -1.9164 3.4667 21 6 4.4517 -3.7375 4.5847 22 6 4.3959 -4.1958 6.0600 23 6 4.0740 -2.8796 6.7998 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7086 1.1614 -3.4844 28 1 1.0901 0.4932 2.5449 29 1 1.3798 0.5822 4.9433 30 1 2.3745 -0.4945 6.9468 31 1 4.0688 -4.5213 3.9310 32 1 5.4732 -3.4790 4.3058 33 1 5.3584 -4.5948 6.3802 34 1 3.6026 -4.9282 6.2092 35 1 4.9940 -2.3900 7.1189 36 1 3.4327 -3.0759 7.6591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597732277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:10 Heat of formation + Delta-G solvation = -19.923270 kcal Electronic energy + Delta-G solvation = -18923.913793 eV Core-core repulsion = 15985.999273 eV Total energy + Delta-G solvation = -2937.914520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91643 -40.40610 -37.46694 -35.80289 -34.94814 -33.54054 -32.48357 -29.47595 -28.51360 -27.23771 -25.40060 -23.89981 -22.71131 -21.68049 -21.10625 -18.78995 -18.20643 -17.80022 -17.04046 -16.68024 -16.40353 -16.06798 -15.76893 -15.17094 -14.74413 -14.60491 -14.24678 -13.77698 -13.72195 -13.48889 -13.23404 -12.99047 -12.77492 -12.62514 -12.57749 -12.28278 -12.06595 -12.03334 -12.03045 -11.15170 -11.09726 -10.83020 -10.64579 -10.51315 -9.73528 -8.97128 -8.18228 -6.28698 0.13806 0.44333 1.39073 1.40819 1.49438 1.90703 2.05082 2.43220 2.91914 3.11083 3.14112 3.60091 3.93696 4.07521 4.14328 4.18594 4.30364 4.33918 4.58980 4.69625 4.83899 4.87428 4.88856 4.93451 4.96702 5.00574 5.06333 5.19920 5.32070 5.37588 5.44247 5.46108 5.70421 5.85263 5.96848 6.14748 6.43592 6.77800 7.20214 7.37047 7.55822 8.87525 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034157 B = 0.004673 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.544963 B = 5990.130144 C = 6692.938405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.509 3.491 13 O -0.523 6.523 14 N -0.659 5.659 15 C 0.335 3.665 16 C -0.204 4.204 17 C -0.036 4.036 18 C -0.190 4.190 19 C 0.110 3.890 20 N -0.531 5.531 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.064 4.064 24 H 0.075 0.925 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.266 0.734 28 H 0.429 0.571 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -2.423 21.546 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.297 3.703 13 O -0.395 6.395 14 N -0.307 5.307 15 C 0.104 3.896 16 C -0.227 4.227 17 C -0.061 4.061 18 C -0.193 4.193 19 C -0.028 4.028 20 N -0.246 5.246 21 C -0.116 4.116 22 C -0.144 4.144 23 C -0.102 4.102 24 H 0.094 0.906 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.188 0.812 30 H 0.195 0.805 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.716 -3.305 20.356 20.800 hybrid contribution -0.228 0.400 -0.792 0.916 sum 2.488 -2.905 19.564 19.934 Atomic orbital electron populations 1.21585 0.94680 0.99475 1.02140 1.18845 0.95593 0.95963 0.88837 0.93573 1.21212 1.31908 1.12815 0.91137 0.93654 1.25562 0.95096 0.95731 1.01292 1.69921 1.36929 1.23398 1.24512 0.85650 0.78613 0.78721 0.78873 1.20293 1.19539 1.20323 1.21997 0.79003 0.84232 0.85042 1.90613 1.36390 1.26080 1.86436 1.43882 1.46980 1.36121 1.03746 1.18839 0.92847 0.90425 0.87446 1.21762 1.06545 1.04339 0.90075 1.21265 0.92517 0.92519 0.99813 1.21847 1.01704 0.98896 0.96870 1.22317 0.94994 0.97025 0.88455 1.66625 1.11614 1.09915 1.36451 1.21199 0.97809 0.92607 0.99968 1.22374 1.04035 0.97176 0.90814 1.20947 1.00014 0.93223 0.95998 0.90629 0.96033 0.92560 0.92427 0.73119 0.81177 0.80527 0.91576 0.89508 0.87488 0.90263 0.88691 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.86 71.98 0.64 -4.94 16 2 C 0.03 1.50 2.65 -12.29 -0.03 1.47 16 3 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.53 -31.82 8.37 25.60 0.21 -31.60 16 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -51.43 11.32 21.45 0.24 -51.19 16 8 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.51 25.28 7.11 87.65 0.62 25.91 16 13 O -0.52 -30.54 13.72 -3.03 -0.04 -30.58 16 14 N -0.66 -25.20 5.31 -308.57 -1.64 -26.84 16 15 C 0.34 12.34 7.42 132.97 0.99 13.33 16 16 C -0.20 -5.15 9.95 22.47 0.22 -4.92 16 17 C -0.04 -0.74 10.16 22.45 0.23 -0.51 16 18 C -0.19 -4.53 6.16 -19.56 -0.12 -4.65 16 19 C 0.11 3.65 7.31 42.69 0.31 3.96 16 20 N -0.53 -22.51 7.88 -180.18 -1.42 -23.93 16 21 C -0.08 -2.01 6.78 30.64 0.21 -1.80 16 22 C -0.11 -1.65 7.10 31.60 0.22 -1.43 16 23 C -0.06 -0.96 6.76 30.49 0.21 -0.75 16 24 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 2.04 7.46 -2.39 -0.02 2.02 16 27 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 28 H 0.43 12.65 7.98 -92.71 -0.74 11.91 16 29 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -78.40 300.85 3.69 -74.71 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.36 Total: 14.05 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.16 Total: -4.21 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -2.82 Total: -101.95 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -78.40 3.69 -74.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597732277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.789 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds