Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.82941 * 2 1 4 4 H 1.08005 * 120.00359 * 120.69895 * 3 2 1 5 5 C 1.37882 * 119.99594 * 300.70065 * 3 2 1 6 6 N 1.31515 * 120.00215 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99653 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.47287 * 60.00124 * 7 5 3 9 9 H 1.48497 * 109.46778 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47258 * 300.00135 * 7 5 3 11 11 C 1.54426 * 109.83333 * 120.89270 * 2 1 3 12 12 C 1.55619 * 102.18334 * 98.17152 * 11 2 1 13 13 C 1.54540 * 100.90462 * 33.73779 * 12 11 2 14 14 C 1.52527 * 109.73683 * 83.18456 * 13 12 11 15 15 C 1.53076 * 109.52053 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.42670 * 300.77162 * 15 14 13 17 17 F 1.39894 * 109.45653 * 300.34241 * 16 15 14 18 18 F 1.39906 * 109.44102 * 180.38773 * 16 15 14 19 19 C 1.53002 * 109.55353 * 60.37120 * 16 15 14 20 20 C 1.52525 * 109.73965 * 204.93799 * 13 12 11 21 21 O 1.43186 * 105.66948 * 324.05643 * 13 12 11 22 22 H 1.09002 * 109.47153 * 59.29925 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.30116 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.30097 * 1 2 3 25 25 H 0.96995 * 119.99762 * 179.97438 * 6 5 3 26 26 H 1.08999 * 110.83863 * 216.35526 * 11 2 1 27 27 H 1.08995 * 110.83626 * 339.95445 * 11 2 1 28 28 H 1.09000 * 111.14486 * 275.81866 * 12 11 2 29 29 H 1.08998 * 111.14319 * 151.65546 * 12 11 2 30 30 H 1.09002 * 109.46336 * 300.08396 * 14 13 12 31 31 H 1.09007 * 109.46302 * 60.05080 * 14 13 12 32 32 H 1.09001 * 109.47949 * 180.78428 * 15 14 13 33 33 H 1.09007 * 109.47883 * 60.76054 * 15 14 13 34 34 H 1.09005 * 109.47683 * 179.63810 * 19 16 15 35 35 H 1.09000 * 109.48045 * 59.60940 * 19 16 15 36 36 H 1.09004 * 109.46194 * 299.93614 * 20 13 12 37 37 H 1.09001 * 109.46337 * 59.90600 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4176 0.0000 4 1 2.6736 1.7637 0.8042 5 6 1.7015 2.2729 -1.0268 6 7 0.9318 1.8514 -2.0063 7 14 2.3346 4.0304 -1.0264 8 1 3.8195 4.0217 -1.0432 9 1 1.8296 4.7385 -2.2300 10 1 1.8574 4.7282 0.1945 11 6 2.0539 -0.7458 1.2466 12 6 2.3687 -2.1589 0.6757 13 6 2.8297 -1.8001 -0.7551 14 6 4.3021 -1.4023 -0.7373 15 6 4.7533 -1.0474 -2.1563 16 6 4.5459 -2.2546 -3.0731 17 9 5.2932 -3.3364 -2.5954 18 9 4.9664 -1.9335 -4.3683 19 6 3.0630 -2.6306 -3.0972 20 6 2.6061 -2.9904 -1.6821 21 8 2.0163 -0.6924 -1.1571 22 1 -0.3633 0.5247 -0.8836 23 1 -0.3633 0.5030 0.8962 24 1 -0.3634 -1.0276 -0.0125 25 1 0.6926 2.4532 -2.7284 26 1 2.9572 -0.2720 1.6308 27 1 1.2853 -0.8002 2.0174 28 1 1.4753 -2.7829 0.6558 29 1 3.1692 -2.6405 1.2373 30 1 4.4372 -0.5388 -0.0859 31 1 4.8988 -2.2350 -0.3646 32 1 5.8091 -0.7767 -2.1451 33 1 4.1661 -0.2061 -2.5247 34 1 2.9157 -3.4867 -3.7557 35 1 2.4797 -1.7857 -3.4633 36 1 3.1805 -3.8441 -1.3221 37 1 1.5465 -3.2458 -1.6961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688350254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -178.525832 kcal Electronic energy + Delta-G solvation = -21627.926372 eV Core-core repulsion = 18232.445143 eV Total energy + Delta-G solvation = -3395.481229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.94676 -47.93417 -40.88787 -37.05485 -34.50550 -32.73919 -32.07974 -31.58363 -28.21474 -27.25411 -24.65036 -23.96314 -22.17612 -21.41383 -20.21741 -18.35306 -18.34091 -17.75083 -17.15327 -16.65151 -16.29457 -15.75221 -15.21187 -14.98268 -14.80894 -14.51748 -14.26137 -13.93181 -13.86649 -13.59597 -13.31866 -13.22838 -13.07016 -12.91303 -12.74742 -12.50333 -12.40000 -12.23774 -12.19261 -11.90972 -11.81362 -11.55695 -10.99678 -10.90522 -10.79339 -10.47724 -9.61272 -7.96151 -6.17065 1.41580 1.43416 1.48951 2.45912 2.82997 3.12385 3.21492 3.38498 3.47747 3.73759 3.95426 4.05655 4.10098 4.26222 4.40323 4.43524 4.58414 4.64084 4.71231 4.81486 4.86971 4.99893 5.04187 5.05830 5.12554 5.14006 5.16862 5.26370 5.28226 5.37840 5.56444 5.64655 5.79764 6.20176 6.43041 6.76289 7.26133 7.58423 9.03049 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.008836 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.388615 B = 3167.956496 C = 3826.180935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 C -0.544 4.544 4 H 0.049 0.951 5 C 0.040 3.960 6 N -0.885 5.885 7 Si 0.933 3.067 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.272 1.272 11 C -0.137 4.137 12 C -0.136 4.136 13 C 0.088 3.912 14 C -0.114 4.114 15 C -0.146 4.146 16 C 0.291 3.709 17 F -0.202 7.202 18 F -0.216 7.216 19 C -0.147 4.147 20 C -0.100 4.100 21 O -0.363 6.363 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.028 0.972 25 H 0.255 0.745 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -9.894 1.949 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.180 3.820 3 C -0.581 4.581 4 H 0.068 0.932 5 C -0.162 4.162 6 N -0.522 5.522 7 Si 0.760 3.240 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.198 1.198 11 C -0.175 4.175 12 C -0.173 4.173 13 C 0.048 3.952 14 C -0.152 4.152 15 C -0.184 4.184 16 C 0.256 3.744 17 F -0.183 7.183 18 F -0.197 7.197 19 C -0.185 4.185 20 C -0.137 4.137 21 O -0.283 6.283 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.468 -9.796 1.552 10.878 hybrid contribution 0.353 1.397 -0.194 1.454 sum 4.821 -8.398 1.358 9.779 Atomic orbital electron populations 1.21867 0.98024 0.98094 1.01066 1.19654 0.90597 0.89796 0.81927 1.21581 1.31956 0.96816 1.07796 0.93231 1.25558 0.94606 1.00823 0.95247 1.70068 1.35627 1.35844 1.10708 0.86027 0.78810 0.81865 0.77296 1.20149 1.21438 1.19757 1.23164 1.00659 0.95276 0.98420 1.23215 1.02015 0.96865 0.95237 1.21983 0.90929 0.88239 0.94085 1.21745 0.96563 1.02195 0.94664 1.22299 1.03234 0.96253 0.96620 1.21189 0.90784 0.85061 0.77411 1.92937 1.79297 1.57844 1.88240 1.92952 1.91990 1.93308 1.41467 1.22350 0.91298 1.04081 1.00749 1.21518 1.02822 0.97056 0.92303 1.88646 1.66020 1.41303 1.32296 0.92362 0.94559 0.95285 0.93578 0.92251 0.91286 0.90308 0.88911 0.91599 0.89451 0.89592 0.90707 0.88360 0.90222 0.88643 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.51 71.98 0.61 -5.58 16 2 C 0.22 10.12 0.82 -11.06 -0.01 10.11 16 3 C -0.54 -28.57 8.22 25.60 0.21 -28.36 16 4 H 0.05 2.59 7.52 -2.91 -0.02 2.57 16 5 C 0.04 2.16 5.26 84.66 0.45 2.60 16 6 N -0.88 -49.92 10.92 21.45 0.23 -49.69 16 7 Si 0.93 43.00 29.54 68.60 2.03 45.02 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 C -0.14 -5.14 5.71 31.98 0.18 -4.95 16 12 C -0.14 -4.16 6.01 32.02 0.19 -3.97 16 13 C 0.09 3.05 0.67 -10.58 -0.01 3.05 16 14 C -0.11 -3.79 4.69 30.46 0.14 -3.64 16 15 C -0.15 -5.05 5.35 30.62 0.16 -4.89 16 16 C 0.29 9.41 2.10 30.59 0.06 9.47 16 17 F -0.20 -6.12 16.01 44.97 0.72 -5.40 16 18 F -0.22 -7.48 17.06 44.97 0.77 -6.71 16 19 C -0.15 -4.55 5.35 30.59 0.16 -4.38 16 20 C -0.10 -2.91 4.79 30.43 0.15 -2.77 16 21 O -0.36 -16.63 8.66 -148.98 -1.29 -17.92 16 22 H 0.06 3.09 6.03 -2.39 -0.01 3.08 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.06 2.24 7.33 -2.39 -0.02 2.22 16 27 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 28 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 29 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16 30 H 0.07 2.43 7.50 -2.39 -0.02 2.41 16 31 H 0.09 2.42 7.81 -2.38 -0.02 2.40 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 3.13 7.85 -2.38 -0.02 3.11 16 34 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.08 2.93 7.85 -2.39 -0.02 2.91 16 36 H 0.10 2.31 7.81 -2.39 -0.02 2.29 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -58.37 293.58 5.81 -52.55 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.05 Total: 15.46 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.31 Total: -33.31 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.23 Total: -49.69 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.29 Total: -17.92 kcal Atomic # 9 Polarization: -13.60 SS G_CDS: 1.49 Total: -12.11 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -58.37 5.81 -52.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688350254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.973 kcal (2) G-P(sol) polarization free energy of solvation -58.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds