Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99768 * 2 1 4 4 C 1.53001 * 109.47046 * 125.00273 * 3 2 1 5 5 H 1.09002 * 109.46877 * 55.00400 * 4 3 2 6 6 C 1.50698 * 109.47256 * 295.00176 * 4 3 2 7 7 O 1.20821 * 120.00199 * 239.99936 * 6 4 3 8 8 O 1.34230 * 119.99753 * 59.99921 * 6 4 3 9 9 C 1.52997 * 109.46928 * 175.00142 * 4 3 2 10 10 H 1.09006 * 109.47196 * 65.76999 * 9 4 3 11 11 C 1.50702 * 109.47088 * 185.76687 * 9 4 3 12 12 H 1.08001 * 119.99934 * 32.43419 * 11 9 4 13 13 C 1.37883 * 120.00120 * 212.43978 * 11 9 4 14 14 N 1.31513 * 119.99745 * 3.60985 * 13 11 9 15 15 Si 1.86796 * 119.99914 * 183.61097 * 13 11 9 16 16 H 1.48500 * 109.47346 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47427 * 300.00170 * 15 13 11 18 18 H 1.48502 * 109.47170 * 59.99758 * 15 13 11 19 19 C 1.50695 * 109.47332 * 305.76379 * 9 4 3 20 20 C 1.38235 * 120.00241 * 295.30864 * 19 9 4 21 21 C 1.38236 * 119.99667 * 179.80847 * 20 19 9 22 22 C 1.38223 * 120.00434 * 0.39803 * 21 20 19 23 23 C 1.38236 * 120.00176 * 359.85661 * 22 21 20 24 24 C 1.38239 * 119.99649 * 115.58194 * 19 9 4 25 25 H 1.08008 * 119.99567 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00272 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00139 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47055 * 5.00195 * 3 2 1 29 29 H 1.08998 * 109.47623 * 245.00691 * 3 2 1 30 30 H 0.96710 * 117.00031 * 180.02562 * 8 6 4 31 31 H 0.96993 * 120.00287 * 353.95258 * 14 13 11 32 32 H 1.07992 * 119.99608 * 359.97438 * 20 19 9 33 33 H 1.08003 * 119.99191 * 180.23210 * 21 20 19 34 34 H 1.08000 * 120.00426 * 179.83467 * 22 21 20 35 35 H 1.07998 * 120.00722 * 179.97438 * 23 22 21 36 36 H 1.07994 * 120.00414 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6828 0.4574 1.1402 6 6 2.2570 1.3219 2.4721 7 8 2.3724 2.2348 3.2551 8 8 1.4357 0.2976 2.7517 9 6 3.8875 2.6016 1.1110 10 1 3.2516 3.4752 1.2551 11 6 4.9381 2.5616 2.1906 12 1 5.3581 1.6161 2.5006 13 6 5.3632 3.7320 2.7827 14 7 4.8018 4.8757 2.4563 15 14 6.7364 3.6933 4.0485 16 1 7.0049 5.0721 4.5300 17 1 6.3304 2.8389 5.1933 18 1 7.9660 3.1379 3.4280 19 6 4.5556 2.6835 -0.2373 20 6 5.4886 1.7321 -0.6053 21 6 6.0985 1.8051 -1.8437 22 6 5.7817 2.8339 -2.7107 23 6 4.8526 3.7883 -2.3406 24 6 4.2397 3.7132 -1.1038 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4028 -0.9314 30 1 0.9574 0.3350 3.5915 31 1 4.1513 4.9089 1.7376 32 1 5.7388 0.9305 0.0736 33 1 6.8246 1.0596 -2.1326 34 1 6.2602 2.8924 -3.6771 35 1 4.6053 4.5924 -3.0178 36 1 3.5138 4.4588 -0.8147 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691860082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = -58.908738 kcal Electronic energy + Delta-G solvation = -19778.225092 eV Core-core repulsion = 16806.327285 eV Total energy + Delta-G solvation = -2971.897808 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79021 -38.50525 -35.80308 -35.27712 -33.70725 -31.48139 -30.18024 -29.52681 -26.43708 -24.05275 -23.23873 -21.79917 -20.93781 -19.62645 -19.19374 -17.26273 -16.85594 -16.24089 -15.76776 -14.96683 -14.52607 -14.21766 -14.13187 -13.72353 -13.34453 -13.14898 -12.70405 -12.50300 -12.35199 -11.92441 -11.85824 -11.47599 -10.91347 -10.83590 -10.73721 -10.60391 -10.46725 -10.21961 -10.10380 -9.65321 -9.55084 -8.99317 -8.78197 -8.30639 -8.20600 -7.71995 -6.31826 -4.01769 2.12160 2.16618 2.60448 3.14770 3.45921 3.48270 3.65452 3.80865 4.52933 4.59679 5.13837 5.38253 5.40087 5.54574 5.57548 5.65979 5.70961 5.76786 5.87074 6.02732 6.10903 6.24435 6.28297 6.31757 6.41964 6.61225 6.72246 6.84896 6.91583 7.08447 7.10630 7.16317 7.22360 7.31592 7.61931 7.77798 8.10314 8.39767 8.77373 8.87995 9.68278 11.07453 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.010822 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.133933 B = 2586.793170 C = 4169.311990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.052 4.052 5 H 0.093 0.907 6 C 0.475 3.525 7 O -0.478 6.478 8 O -0.527 6.527 9 C 0.072 3.928 10 H 0.056 0.944 11 C -0.579 4.579 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.899 5.899 15 Si 1.062 2.938 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.288 1.288 19 C -0.029 4.029 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.151 4.151 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.392 0.608 31 H 0.270 0.730 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -8.059 -6.795 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.147 4.147 3 C -0.129 4.129 4 C -0.071 4.071 5 H 0.111 0.889 6 C 0.315 3.685 7 O -0.362 6.362 8 O -0.339 6.339 9 C 0.053 3.947 10 H 0.074 0.926 11 C -0.616 4.616 12 H 0.066 0.934 13 C -0.172 4.172 14 N -0.534 5.534 15 Si 0.891 3.109 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.029 4.029 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.169 4.169 23 C -0.142 4.142 24 C -0.149 4.149 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.231 -6.822 -5.875 9.566 hybrid contribution -0.999 -0.938 -0.436 1.439 sum -4.230 -7.761 -6.312 10.861 Atomic orbital electron populations 1.23611 0.95886 1.00978 1.03479 1.22891 0.95944 0.98249 0.97655 1.20891 0.97902 0.95324 0.98739 1.21149 0.95059 1.03332 0.87552 0.88878 1.23508 0.76944 0.78933 0.89074 1.90765 1.60753 1.36081 1.48583 1.84645 1.56516 1.48729 1.43975 1.17993 0.94321 0.92353 0.90059 0.92575 1.21552 1.23716 0.95348 1.20969 0.93420 1.25630 0.99602 0.92424 0.99516 1.70755 1.26493 1.27282 1.28901 0.83646 0.75409 0.76026 0.75831 1.20777 1.21548 1.21475 1.20669 0.94889 0.92552 0.94823 1.20934 0.96676 0.99759 0.95262 1.21020 1.00176 0.98510 0.94900 1.20839 1.00123 0.96493 0.99464 1.20973 0.97791 0.98646 0.96762 1.21071 1.00983 0.99044 0.93799 0.89094 0.89269 0.87634 0.91684 0.89561 0.75123 0.91835 0.86647 0.87346 0.87507 0.87377 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 14.17 29.01 0.41 -2.22 16 2 C -0.13 -1.85 7.79 -36.03 -0.28 -2.13 16 3 C -0.09 -1.50 4.90 -27.88 -0.14 -1.64 16 4 C -0.05 -1.01 1.70 -91.77 -0.16 -1.16 16 5 H 0.09 1.76 7.89 -51.93 -0.41 1.35 16 6 C 0.48 9.66 7.36 36.00 0.27 9.92 16 7 O -0.48 -11.86 15.77 -18.75 -0.30 -12.16 16 8 O -0.53 -8.38 11.65 -39.26 -0.46 -8.84 16 9 C 0.07 1.66 1.13 -92.93 -0.10 1.55 16 10 H 0.06 1.46 5.87 -51.93 -0.30 1.16 16 11 C -0.58 -15.38 6.38 -34.44 -0.22 -15.60 16 12 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 13 C 0.03 0.98 5.46 -17.82 -0.10 0.88 16 14 N -0.90 -26.93 13.62 55.43 0.75 -26.17 16 15 Si 1.06 25.64 29.90 -169.99 -5.08 20.56 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.03 -0.60 3.17 -104.62 -0.33 -0.94 16 20 C -0.11 -2.11 8.88 -39.58 -0.35 -2.46 16 21 C -0.13 -2.20 10.05 -39.59 -0.40 -2.59 16 22 C -0.15 -2.49 10.05 -39.59 -0.40 -2.89 16 23 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 24 C -0.13 -2.60 9.63 -39.58 -0.38 -2.98 16 25 H 0.09 1.03 8.06 -52.48 -0.42 0.60 16 26 H 0.09 1.15 7.84 -52.49 -0.41 0.74 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 29 H 0.09 1.42 6.83 -51.93 -0.35 1.06 16 30 H 0.39 4.68 9.10 45.56 0.41 5.09 16 31 H 0.27 7.99 6.53 -40.82 -0.27 7.72 16 32 H 0.12 2.21 7.81 -52.49 -0.41 1.80 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 2.18 7.95 -52.49 -0.42 1.76 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -31.76 308.68 -6.89 -38.65 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.88 Total: 8.12 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.58 Total: -24.81 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.75 Total: -26.17 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.75 Total: -21.00 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.76 -6.89 -38.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691860082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.260 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds