Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.53003 * 109.46675 * 120.00084 * 2 1 3 5 5 C 1.50702 * 109.46688 * 184.99988 * 4 2 1 6 6 H 1.08002 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00075 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99659 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00373 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46770 * 89.99819 * 9 7 5 11 11 H 1.48500 * 109.47195 * 210.00104 * 9 7 5 12 12 H 1.48498 * 109.47103 * 330.00207 * 9 7 5 13 13 O 1.42901 * 109.46892 * 239.99332 * 2 1 3 14 14 C 1.35916 * 116.99627 * 84.73455 * 13 2 1 15 15 C 1.38888 * 119.97946 * 354.65404 * 14 13 2 16 16 C 1.38165 * 120.14268 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.41467 * 359.95302 * 16 15 14 18 18 C 1.39467 * 119.99374 * 0.04400 * 17 16 15 19 19 C 1.38200 * 119.97883 * 174.63405 * 14 13 2 20 20 C 1.47453 * 110.67631 * 180.02562 * 18 17 16 21 21 O 1.21256 * 126.05375 * 179.97438 * 20 18 17 22 22 C 1.50946 * 107.99767 * 359.92249 * 20 18 17 23 23 C 1.51010 * 130.41876 * 180.02562 * 17 16 15 24 24 H 1.08999 * 109.46719 * 300.00721 * 1 2 3 25 25 H 1.08999 * 109.46834 * 60.00224 * 1 2 3 26 26 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47197 * 304.99168 * 4 2 1 28 28 H 1.08993 * 109.47449 * 64.99672 * 4 2 1 29 29 H 0.96998 * 119.99733 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.92535 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.79464 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.99341 * 0.04254 * 19 14 13 33 33 H 1.08998 * 110.27011 * 241.06081 * 22 20 18 34 34 H 1.08997 * 110.27276 * 119.09046 * 22 20 18 35 35 H 1.09005 * 110.08520 * 60.80410 * 23 17 16 36 36 H 1.09003 * 110.08547 * 299.23542 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3584 8 7 3.5762 -1.8361 3.3006 9 14 6.0921 -1.0615 2.4368 10 1 6.4708 0.1614 3.1894 11 1 6.6440 -2.2566 3.1240 12 1 6.6413 -0.9849 1.0592 13 8 2.0064 -0.6738 -1.1667 14 6 2.1072 0.0611 -2.3056 15 6 1.6507 1.3726 -2.3280 16 6 1.7511 2.1226 -3.4841 17 6 2.3063 1.5766 -4.6266 18 6 2.7684 0.2608 -4.6169 19 6 2.6643 -0.4970 -3.4405 20 6 3.3173 -0.1080 -5.9349 21 8 3.7928 -1.1823 -6.2347 22 6 3.1824 1.0870 -6.8472 23 6 2.5258 2.1802 -5.9933 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 4.0606 -2.2429 4.0360 30 1 1.2156 1.8069 -1.4400 31 1 1.3947 3.1420 -3.4951 32 1 3.0187 -1.5171 -3.4224 33 1 2.5487 0.8418 -7.6995 34 1 4.1644 1.4139 -7.1892 35 1 3.1858 3.0446 -5.9191 36 1 1.5714 2.4739 -6.4304 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691901526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = -62.252570 kcal Electronic energy + Delta-G solvation = -18776.914366 eV Core-core repulsion = 15804.871559 eV Total energy + Delta-G solvation = -2972.042807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60090 -39.14893 -37.38027 -34.55508 -33.29359 -31.78520 -30.66083 -28.46889 -27.48460 -25.93964 -23.38803 -23.01196 -21.44503 -20.51422 -19.32916 -17.49550 -16.43647 -16.20486 -15.91672 -15.58479 -15.25157 -14.48630 -14.44633 -14.19912 -13.57065 -13.52777 -13.12345 -12.97468 -12.44636 -12.34640 -12.00650 -11.86905 -11.60551 -11.52412 -11.36376 -11.08327 -10.80681 -10.75405 -10.40978 -10.07608 -9.69932 -9.43351 -9.14803 -8.93799 -8.41188 -7.79937 -6.04222 -4.05900 0.66459 1.52886 2.42260 3.31364 3.38106 3.43351 3.57677 3.84442 4.15082 4.39809 4.44565 4.60402 4.87658 4.95381 5.02358 5.26481 5.32987 5.40061 5.52495 5.53841 5.60379 5.67094 5.69550 5.73646 5.87902 6.01993 6.11836 6.26937 6.43732 6.44816 6.57159 6.69325 6.79472 7.43554 7.45557 7.54344 7.91998 8.05188 8.32412 8.97572 9.57908 11.07155 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.005065 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.180849 B = 5527.157136 C = 6204.676942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.063 0.937 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 O -0.288 6.288 14 C 0.139 3.861 15 C -0.176 4.176 16 C -0.081 4.081 17 C -0.105 4.105 18 C -0.158 4.158 19 C -0.093 4.093 20 C 0.408 3.592 21 O -0.445 6.445 22 C -0.170 4.170 23 C -0.073 4.073 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 9.926 -16.174 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 O -0.200 6.200 14 C 0.091 3.909 15 C -0.194 4.194 16 C -0.099 4.099 17 C -0.106 4.106 18 C -0.159 4.159 19 C -0.112 4.112 20 C 0.286 3.714 21 O -0.320 6.320 22 C -0.208 4.208 23 C -0.110 4.110 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.097 9.048 -16.118 19.174 hybrid contribution 0.895 0.285 0.392 1.018 sum -4.202 9.333 -15.726 18.764 Atomic orbital electron populations 1.22428 0.96886 1.02780 1.01479 1.22926 0.91882 0.97127 0.85060 0.91887 1.19275 0.96642 0.96569 0.88655 1.21109 0.91645 1.34684 1.07956 0.92625 1.24970 0.98501 0.95151 0.95640 1.69947 1.35626 1.35902 1.12063 0.86584 0.85648 0.77542 0.78249 1.20653 1.21128 1.19801 1.86321 1.79865 1.37913 1.15937 1.18969 0.93648 0.90363 0.87902 1.21577 1.04027 0.94295 0.99533 1.20288 0.98970 0.99562 0.91105 1.20327 1.00266 0.94445 0.95562 1.20782 1.04011 0.95819 0.95278 1.20360 1.00137 1.00982 0.89755 1.22571 0.73495 0.87636 0.87729 1.90545 1.35409 1.25914 1.80149 1.22279 1.03782 0.95268 0.99440 1.20655 1.01533 0.97779 0.91040 0.91241 0.93308 0.91788 0.94261 0.95203 0.92898 0.84357 0.85611 0.84702 0.87588 0.87558 0.89596 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.17 37.16 0.34 -2.55 16 2 C 0.09 1.72 2.17 -26.73 -0.06 1.66 16 3 H 0.06 1.21 6.32 -51.93 -0.33 0.88 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.52 -14.50 8.88 -34.44 -0.31 -14.81 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 O -0.29 -6.06 9.55 -19.48 -0.19 -6.24 16 14 C 0.14 2.48 6.58 -39.35 -0.26 2.22 16 15 C -0.18 -2.61 8.23 -39.37 -0.32 -2.93 16 16 C -0.08 -0.99 10.02 -39.60 -0.40 -1.39 16 17 C -0.11 -1.28 6.21 -104.00 -0.65 -1.92 16 18 C -0.16 -2.32 6.12 -104.90 -0.64 -2.96 16 19 C -0.09 -1.61 10.05 -38.81 -0.39 -2.00 16 20 C 0.41 5.54 7.78 -30.44 -0.24 5.30 16 21 O -0.45 -7.49 18.02 5.58 0.10 -7.39 16 22 C -0.17 -1.46 6.86 -27.52 -0.19 -1.65 16 23 C -0.07 -0.59 6.80 -27.49 -0.19 -0.78 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.14 1.91 5.41 -52.48 -0.28 1.62 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.14 2.39 8.06 -52.48 -0.42 1.96 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -32.13 306.63 -8.01 -40.13 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.74 Total: -2.39 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.52 Total: -19.72 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.09 Total: -13.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.13 -8.01 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691901526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.120 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds