Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 C 1.53003 * 109.46675 * 120.00084 * 2 1 3 5 5 C 1.50702 * 109.46688 * 184.99988 * 4 2 1 6 6 H 1.08002 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00075 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99659 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00373 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46770 * 89.99819 * 9 7 5 11 11 H 1.48500 * 109.47195 * 210.00104 * 9 7 5 12 12 H 1.48498 * 109.47103 * 330.00207 * 9 7 5 13 13 O 1.42901 * 109.46892 * 239.99332 * 2 1 3 14 14 C 1.35916 * 116.99627 * 84.73455 * 13 2 1 15 15 C 1.38888 * 119.97946 * 354.65404 * 14 13 2 16 16 C 1.38165 * 120.14268 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.41467 * 359.95302 * 16 15 14 18 18 C 1.39467 * 119.99374 * 0.04400 * 17 16 15 19 19 C 1.38200 * 119.97883 * 174.63405 * 14 13 2 20 20 C 1.47453 * 110.67631 * 180.02562 * 18 17 16 21 21 O 1.21256 * 126.05375 * 179.97438 * 20 18 17 22 22 C 1.50946 * 107.99767 * 359.92249 * 20 18 17 23 23 C 1.51010 * 130.41876 * 180.02562 * 17 16 15 24 24 H 1.08999 * 109.46719 * 300.00721 * 1 2 3 25 25 H 1.08999 * 109.46834 * 60.00224 * 1 2 3 26 26 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47197 * 304.99168 * 4 2 1 28 28 H 1.08993 * 109.47449 * 64.99672 * 4 2 1 29 29 H 0.96998 * 119.99733 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.92535 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.79464 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.99341 * 0.04254 * 19 14 13 33 33 H 1.08998 * 110.27011 * 241.06081 * 22 20 18 34 34 H 1.08997 * 110.27276 * 119.09046 * 22 20 18 35 35 H 1.09005 * 110.08520 * 60.80410 * 23 17 16 36 36 H 1.09003 * 110.08547 * 299.23542 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3584 8 7 3.5762 -1.8361 3.3006 9 14 6.0921 -1.0615 2.4368 10 1 6.4708 0.1614 3.1894 11 1 6.6440 -2.2566 3.1240 12 1 6.6413 -0.9849 1.0592 13 8 2.0064 -0.6738 -1.1667 14 6 2.1072 0.0611 -2.3056 15 6 1.6507 1.3726 -2.3280 16 6 1.7511 2.1226 -3.4841 17 6 2.3063 1.5766 -4.6266 18 6 2.7684 0.2608 -4.6169 19 6 2.6643 -0.4970 -3.4405 20 6 3.3173 -0.1080 -5.9349 21 8 3.7928 -1.1823 -6.2347 22 6 3.1824 1.0870 -6.8472 23 6 2.5258 2.1802 -5.9933 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 4.0606 -2.2429 4.0360 30 1 1.2156 1.8069 -1.4400 31 1 1.3947 3.1420 -3.4951 32 1 3.0187 -1.5171 -3.4224 33 1 2.5487 0.8418 -7.6995 34 1 4.1644 1.4139 -7.1892 35 1 3.1858 3.0446 -5.9191 36 1 1.5714 2.4739 -6.4304 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691901526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = -81.468556 kcal Electronic energy + Delta-G solvation = -18777.747633 eV Core-core repulsion = 15804.871559 eV Total energy + Delta-G solvation = -2972.876075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71118 -40.44126 -38.58647 -35.87478 -34.97735 -33.45007 -31.88002 -29.59681 -29.26086 -26.90785 -25.31029 -24.03958 -22.85701 -21.61981 -20.61418 -18.83578 -18.54386 -17.32363 -16.92131 -16.75484 -16.56275 -16.29859 -15.92557 -15.28166 -14.75748 -14.54551 -14.47801 -14.33993 -13.90530 -13.66862 -13.50738 -13.26114 -13.00014 -12.77708 -12.68124 -12.50331 -12.42294 -12.20571 -11.98925 -11.61657 -11.31993 -11.05291 -10.74806 -10.61580 -10.07791 -9.02130 -8.24718 -6.33655 -0.44839 0.40646 1.34372 1.35652 1.36704 1.47420 2.30061 2.36894 2.73118 3.07564 3.13265 3.53709 3.73778 3.87614 4.04076 4.10245 4.19988 4.24747 4.33706 4.37497 4.45996 4.57136 4.75995 4.85531 4.93076 5.00799 5.02831 5.14973 5.17168 5.22875 5.31500 5.38906 5.40120 5.45831 5.72703 5.77065 6.15138 6.43368 6.63771 6.78292 7.34030 8.86992 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.005065 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.180849 B = 5527.157136 C = 6204.676942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.072 0.928 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.275 1.275 13 O -0.326 6.326 14 C 0.102 3.898 15 C -0.175 4.175 16 C -0.072 4.072 17 C -0.083 4.083 18 C -0.183 4.183 19 C -0.125 4.125 20 C 0.399 3.601 21 O -0.494 6.494 22 C -0.158 4.158 23 C -0.067 4.067 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.030 0.970 28 H -0.005 1.005 29 H 0.265 0.735 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 13.624 -18.520 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.090 0.910 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.200 1.200 13 O -0.240 6.240 14 C 0.057 3.943 15 C -0.193 4.193 16 C -0.090 4.090 17 C -0.084 4.084 18 C -0.184 4.184 19 C -0.144 4.144 20 C 0.280 3.720 21 O -0.372 6.372 22 C -0.195 4.195 23 C -0.104 4.104 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.300 12.776 -18.473 23.077 hybrid contribution 0.940 -0.837 1.031 1.627 sum -4.360 11.939 -17.442 21.581 Atomic orbital electron populations 1.22327 0.93821 1.02791 1.03535 1.22652 0.94166 0.96249 0.83173 0.90993 1.19133 0.95441 0.95088 0.91329 1.21453 0.93368 1.34547 1.07703 0.93287 1.25834 1.03364 0.94786 0.95309 1.70057 1.37500 1.36721 1.12693 0.85557 0.79837 0.78203 0.78150 1.18946 1.20529 1.19987 1.86218 1.81258 1.39476 1.17084 1.19185 0.96273 0.91972 0.86902 1.21790 1.03370 0.92901 1.01240 1.20775 0.97435 1.01070 0.89717 1.20929 0.96943 0.92931 0.97562 1.21200 1.04880 0.97254 0.95080 1.20384 1.01992 1.00522 0.91515 1.23403 0.71861 0.88490 0.88197 1.90524 1.37644 1.28228 1.80829 1.22381 1.05740 0.92369 0.99002 1.20868 1.03850 0.97884 0.87766 0.89642 0.90598 0.92866 0.95235 0.98615 0.92629 0.83276 0.81015 0.87664 0.84921 0.85258 0.86625 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.41 9.17 71.98 0.66 -4.75 16 2 C 0.09 3.86 2.17 30.60 0.07 3.92 16 3 H 0.07 2.79 6.32 -2.39 -0.02 2.77 16 4 C 0.03 1.43 4.68 29.85 0.14 1.57 16 5 C -0.53 -31.13 8.88 25.60 0.23 -30.90 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 9 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 13 O -0.33 -14.59 9.55 -92.61 -0.88 -15.47 16 14 C 0.10 3.81 6.58 22.42 0.15 3.95 16 15 C -0.17 -4.90 8.23 22.41 0.18 -4.72 16 16 C -0.07 -1.47 10.02 22.26 0.22 -1.25 16 17 C -0.08 -1.70 6.21 -19.46 -0.12 -1.82 16 18 C -0.18 -5.30 6.12 -20.05 -0.12 -5.43 16 19 C -0.12 -4.60 10.05 22.77 0.23 -4.37 16 20 C 0.40 10.51 7.78 28.19 0.22 10.73 16 21 O -0.49 -17.18 18.02 -2.95 -0.05 -17.23 16 22 C -0.16 -2.00 6.86 30.09 0.21 -1.80 16 23 C -0.07 -0.67 6.80 30.11 0.20 -0.47 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.08 2.02 6.89 -2.39 -0.02 2.00 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.15 3.78 5.41 -2.91 -0.02 3.76 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -76.22 306.63 5.18 -71.04 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.08 Total: 4.97 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.73 Total: -34.56 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.63 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.94 Total: -32.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.22 5.18 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691901526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.424 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds