Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00291 * 2 1 4 4 H 1.48496 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47192 * 300.00423 * 3 2 1 6 6 H 1.48501 * 109.46712 * 60.00422 * 3 2 1 7 7 C 1.37885 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.40085 * 119.74988 * 269.99769 * 11 10 9 13 13 C 1.38439 * 120.90275 * 48.24219 * 12 11 10 14 14 C 1.38329 * 119.80658 * 181.94019 * 13 12 11 15 15 C 1.38284 * 120.23276 * 359.97438 * 14 13 12 16 16 C 1.38294 * 120.28424 * 359.42267 * 15 14 13 17 17 C 1.38567 * 119.83652 * 0.08017 * 16 15 14 18 18 N 1.39955 * 120.59676 * 181.28606 * 17 16 15 19 19 C 1.46348 * 118.66867 * 107.53437 * 18 17 16 20 20 C 1.52970 * 109.85453 * 42.46505 * 19 18 17 21 21 C 1.35161 * 119.74839 * 90.00036 * 11 10 9 22 22 O 1.21304 * 119.76297 * 4.33321 * 21 11 10 23 23 H 0.97002 * 119.99432 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47341 * 60.00290 * 9 7 2 25 25 H 1.08995 * 109.47694 * 299.99795 * 9 7 2 26 26 H 1.08996 * 109.46899 * 60.00226 * 10 9 7 27 27 H 1.09003 * 109.46847 * 300.00076 * 10 9 7 28 28 H 1.08006 * 120.09242 * 1.91962 * 13 12 11 29 29 H 1.08000 * 119.88198 * 179.97438 * 14 13 12 30 30 H 1.08003 * 119.85736 * 179.42578 * 15 14 13 31 31 H 1.08002 * 120.07808 * 180.10125 * 16 15 14 32 32 H 0.97000 * 120.66384 * 287.55868 * 18 17 16 33 33 H 1.08999 * 109.40266 * 162.57642 * 19 18 17 34 34 H 1.08996 * 109.40586 * 282.41868 * 19 18 17 35 35 H 1.08998 * 109.36138 * 163.94610 * 20 19 18 36 36 H 1.09003 * 109.35736 * 283.53524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.1647 -5.5332 1.2148 13 6 0.5641 -4.8011 2.2247 14 6 0.2666 -5.4091 3.4310 15 6 0.5666 -6.7442 3.6305 16 6 1.1553 -7.4850 2.6220 17 6 1.4471 -6.8860 1.4070 18 7 2.0181 -7.6272 0.3662 19 6 1.1881 -7.9698 -0.7894 20 6 0.3410 -6.7629 -1.1966 21 6 1.1777 -5.5113 -1.1749 22 8 1.5534 -5.0200 -2.2185 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 2.8718 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.3287 -3.7583 2.0711 29 1 -0.2016 -4.8391 4.2199 30 1 0.3402 -7.2104 4.5781 31 1 1.3867 -8.5279 2.7808 32 1 2.9454 -7.9085 0.4102 33 1 1.8288 -8.2601 -1.6221 34 1 0.5320 -8.8007 -0.5304 35 1 -0.0503 -6.9188 -2.2020 36 1 -0.4906 -6.6538 -0.5004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695160847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = 1.337134 kcal Electronic energy + Delta-G solvation = -19580.240477 eV Core-core repulsion = 16643.247878 eV Total energy + Delta-G solvation = -2936.992600 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63672 -38.30384 -35.90087 -35.24277 -33.05463 -31.26829 -30.25847 -29.64878 -27.75624 -25.09480 -23.83784 -22.25956 -21.50858 -21.00833 -19.28585 -17.18435 -16.95112 -16.53982 -15.88267 -15.70337 -15.15627 -14.49366 -14.31401 -13.99915 -13.86530 -13.59847 -12.87218 -12.71638 -12.46956 -12.32797 -12.06986 -11.69188 -11.60413 -11.21015 -11.03157 -10.94493 -10.73003 -10.09007 -9.88060 -9.62019 -9.20785 -8.91753 -8.87287 -8.37021 -8.22903 -7.51718 -6.03036 -4.05911 1.40495 1.52800 3.01032 3.30786 3.37066 3.40378 3.45564 3.66174 3.92850 4.45347 4.72779 4.95256 5.08014 5.12902 5.22886 5.33658 5.43558 5.59922 5.62818 5.71266 5.78575 5.82197 6.08251 6.13041 6.44223 6.48030 6.54214 6.68615 6.80697 6.90733 7.02486 7.42413 7.63018 7.68929 7.91924 7.96528 8.01825 8.33171 8.57267 9.00181 9.57995 11.08397 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006108 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.725173 B = 4583.094819 C = 5369.439181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.115 3.885 11 N -0.554 5.554 12 C 0.138 3.862 13 C -0.121 4.121 14 C -0.109 4.109 15 C -0.129 4.129 16 C -0.121 4.121 17 C 0.142 3.858 18 N -0.791 5.791 19 C 0.152 3.848 20 C -0.162 4.162 21 C 0.526 3.474 22 O -0.533 6.533 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -17.356 5.653 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.026 4.026 10 C -0.005 4.005 11 N -0.279 5.279 12 C 0.042 3.958 13 C -0.141 4.141 14 C -0.128 4.128 15 C -0.148 4.148 16 C -0.142 4.142 17 C 0.046 3.954 18 N -0.437 5.437 19 C 0.027 3.973 20 C -0.203 4.203 21 C 0.315 3.685 22 O -0.409 6.409 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.334 -16.921 4.946 17.633 hybrid contribution 0.620 0.982 0.092 1.165 sum 0.954 -15.939 5.038 16.744 Atomic orbital electron populations 1.69982 1.06080 1.26601 1.50525 1.24994 0.94853 0.99293 0.95096 0.86495 0.80117 0.83568 0.77590 1.19669 1.20953 1.20965 1.21114 0.93099 0.90603 1.51075 0.92440 1.19508 0.94342 0.91058 0.97703 1.22014 0.95527 0.81139 1.01837 1.45829 1.54868 1.23887 1.03327 1.18262 0.98454 0.91456 0.87587 1.21519 0.97611 1.01920 0.93076 1.21067 1.00078 0.94825 0.96859 1.21004 1.00582 0.94375 0.98817 1.21196 1.00040 0.99539 0.93377 1.17506 0.99206 0.89216 0.89477 1.43833 1.13348 1.66702 1.19854 1.20993 0.93688 0.94282 0.88322 1.22195 0.99432 0.93887 1.04782 1.20441 0.80049 0.84994 0.82994 1.90710 1.54211 1.64619 1.31346 0.92977 0.96098 0.96022 0.91652 0.90444 0.83845 0.85725 0.86190 0.86017 0.76453 0.90707 0.92644 0.87807 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.30 5.18 -27.88 -0.14 0.16 16 10 C 0.11 2.56 5.05 -4.04 -0.02 2.54 16 11 N -0.55 -10.77 2.57 -113.28 -0.29 -11.07 16 12 C 0.14 2.31 5.03 -83.53 -0.42 1.89 16 13 C -0.12 -1.98 9.48 -39.47 -0.37 -2.36 16 14 C -0.11 -1.43 10.04 -39.53 -0.40 -1.83 16 15 C -0.13 -1.45 10.03 -39.54 -0.40 -1.85 16 16 C -0.12 -1.40 9.98 -39.44 -0.39 -1.80 16 17 C 0.14 1.95 5.63 -83.55 -0.47 1.48 16 18 N -0.79 -9.55 5.21 -58.60 -0.31 -9.85 16 19 C 0.15 1.68 7.01 -4.14 -0.03 1.65 16 20 C -0.16 -2.26 5.46 -27.96 -0.15 -2.41 16 21 C 0.53 10.20 6.75 -10.87 -0.07 10.12 16 22 O -0.53 -12.40 16.60 5.54 0.09 -12.30 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.58 5.63 -51.93 -0.29 0.29 16 26 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 27 H 0.08 1.83 7.34 -51.93 -0.38 1.45 16 28 H 0.14 2.71 5.49 -52.48 -0.29 2.42 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.40 4.27 8.96 -40.82 -0.37 3.90 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.09 1.19 7.63 -51.93 -0.40 0.79 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -33.06 298.61 -8.21 -41.28 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.64 Total: 2.85 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.28 Total: -5.99 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.14 Total: -47.18 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.06 -8.21 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695160847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.614 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds