Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00291 * 2 1 4 4 H 1.48496 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47192 * 300.00423 * 3 2 1 6 6 H 1.48501 * 109.46712 * 60.00422 * 3 2 1 7 7 C 1.37885 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.40085 * 119.74988 * 269.99769 * 11 10 9 13 13 C 1.38439 * 120.90275 * 48.24219 * 12 11 10 14 14 C 1.38329 * 119.80658 * 181.94019 * 13 12 11 15 15 C 1.38284 * 120.23276 * 359.97438 * 14 13 12 16 16 C 1.38294 * 120.28424 * 359.42267 * 15 14 13 17 17 C 1.38567 * 119.83652 * 0.08017 * 16 15 14 18 18 N 1.39955 * 120.59676 * 181.28606 * 17 16 15 19 19 C 1.46348 * 118.66867 * 107.53437 * 18 17 16 20 20 C 1.52970 * 109.85453 * 42.46505 * 19 18 17 21 21 C 1.35161 * 119.74839 * 90.00036 * 11 10 9 22 22 O 1.21304 * 119.76297 * 4.33321 * 21 11 10 23 23 H 0.97002 * 119.99432 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47341 * 60.00290 * 9 7 2 25 25 H 1.08995 * 109.47694 * 299.99795 * 9 7 2 26 26 H 1.08996 * 109.46899 * 60.00226 * 10 9 7 27 27 H 1.09003 * 109.46847 * 300.00076 * 10 9 7 28 28 H 1.08006 * 120.09242 * 1.91962 * 13 12 11 29 29 H 1.08000 * 119.88198 * 179.97438 * 14 13 12 30 30 H 1.08003 * 119.85736 * 179.42578 * 15 14 13 31 31 H 1.08002 * 120.07808 * 180.10125 * 16 15 14 32 32 H 0.97000 * 120.66384 * 287.55868 * 18 17 16 33 33 H 1.08999 * 109.40266 * 162.57642 * 19 18 17 34 34 H 1.08996 * 109.40586 * 282.41868 * 19 18 17 35 35 H 1.08998 * 109.36138 * 163.94610 * 20 19 18 36 36 H 1.09003 * 109.35736 * 283.53524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.1647 -5.5332 1.2148 13 6 0.5641 -4.8011 2.2247 14 6 0.2666 -5.4091 3.4310 15 6 0.5666 -6.7442 3.6305 16 6 1.1553 -7.4850 2.6220 17 6 1.4471 -6.8860 1.4070 18 7 2.0181 -7.6272 0.3662 19 6 1.1881 -7.9698 -0.7894 20 6 0.3410 -6.7629 -1.1966 21 6 1.1777 -5.5113 -1.1749 22 8 1.5534 -5.0200 -2.2185 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8896 26 1 2.8718 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.3287 -3.7583 2.0711 29 1 -0.2016 -4.8391 4.2199 30 1 0.3402 -7.2104 4.5781 31 1 1.3867 -8.5279 2.7808 32 1 2.9454 -7.9085 0.4102 33 1 1.8288 -8.2601 -1.6221 34 1 0.5320 -8.8007 -0.5304 35 1 -0.0503 -6.9188 -2.2020 36 1 -0.4906 -6.6538 -0.5004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695160847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = -20.554018 kcal Electronic energy + Delta-G solvation = -19581.189749 eV Core-core repulsion = 16643.247878 eV Total energy + Delta-G solvation = -2937.941871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95673 -39.62613 -37.15692 -36.65539 -35.13989 -32.48938 -31.99011 -30.83782 -29.08118 -26.91021 -25.16729 -23.47149 -23.19025 -22.29632 -20.65268 -18.74361 -18.25317 -18.15221 -17.31959 -16.99271 -16.59624 -16.29157 -15.58846 -15.26785 -15.15336 -15.00117 -14.42283 -14.21360 -14.05931 -13.62458 -13.52428 -13.29236 -12.92189 -12.71728 -12.57432 -12.46550 -12.20102 -12.01834 -11.80595 -11.44161 -11.05619 -10.63227 -10.46991 -9.89464 -9.36699 -8.71224 -8.27350 -6.40173 0.30534 0.46104 1.36021 1.37761 1.50870 1.55657 1.96613 2.37757 2.70175 2.87141 3.05774 3.50405 3.96112 4.05025 4.10266 4.19720 4.27842 4.42598 4.51625 4.59932 4.64944 4.67742 4.78319 4.82438 4.90428 4.99197 5.18259 5.38462 5.46014 5.47893 5.64264 5.69311 5.76309 5.92956 6.10596 6.38917 6.57032 6.73850 7.05482 7.09212 7.29166 8.85067 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006108 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.725173 B = 4583.094819 C = 5369.439181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.133 3.867 11 N -0.556 5.556 12 C 0.101 3.899 13 C -0.145 4.145 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.107 4.107 17 C 0.147 3.853 18 N -0.791 5.791 19 C 0.157 3.843 20 C -0.153 4.153 21 C 0.513 3.487 22 O -0.587 6.587 23 H 0.266 0.734 24 H -0.027 1.027 25 H 0.012 0.988 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -19.696 7.604 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.012 4.012 10 C 0.011 3.989 11 N -0.280 5.280 12 C 0.007 3.993 13 C -0.166 4.166 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.128 4.128 17 C 0.051 3.949 18 N -0.439 5.439 19 C 0.032 3.968 20 C -0.194 4.194 21 C 0.304 3.696 22 O -0.467 6.467 23 H 0.074 0.926 24 H -0.009 1.009 25 H 0.030 0.970 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.159 0.841 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.885 -19.307 6.937 20.534 hybrid contribution 0.384 1.664 -0.440 1.763 sum 1.270 -17.644 6.497 18.845 Atomic orbital electron populations 1.70117 1.07912 1.27945 1.51069 1.26003 0.95815 1.03500 0.94216 0.85307 0.78993 0.78202 0.77989 1.18521 1.20501 1.19603 1.21526 0.93567 0.91838 1.51508 0.91989 1.19289 0.94345 0.92734 0.94808 1.21493 0.94461 0.81786 1.01150 1.45761 1.54563 1.22721 1.04995 1.18569 1.01079 0.93143 0.86532 1.21339 0.99751 1.00388 0.95072 1.21275 0.99860 0.96150 0.95709 1.21445 0.98075 0.93070 1.00147 1.21560 0.98328 1.01011 0.91891 1.17604 0.98689 0.87821 0.90807 1.43919 1.13973 1.66195 1.19784 1.21147 0.93984 0.93205 0.88487 1.22274 0.98981 0.92253 1.05916 1.21549 0.79713 0.86279 0.82050 1.90668 1.56494 1.66534 1.33031 0.92570 1.00864 0.97026 0.90606 0.92475 0.87886 0.84086 0.82159 0.82513 0.75536 0.89332 0.89204 0.86512 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -32.75 9.11 25.60 0.23 -32.51 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.49 5.18 29.85 0.15 1.64 16 10 C 0.13 6.35 5.05 86.38 0.44 6.79 16 11 N -0.56 -22.76 2.57 -630.47 -1.62 -24.39 16 12 C 0.10 3.41 5.03 38.18 0.19 3.60 16 13 C -0.14 -4.91 9.48 22.34 0.21 -4.70 16 14 C -0.11 -2.73 10.04 22.30 0.22 -2.50 16 15 C -0.11 -1.98 10.03 22.29 0.22 -1.75 16 16 C -0.11 -2.01 9.98 22.36 0.22 -1.79 16 17 C 0.15 3.71 5.63 38.23 0.22 3.92 16 18 N -0.79 -16.95 5.21 -339.32 -1.77 -18.72 16 19 C 0.16 2.99 7.01 86.40 0.61 3.60 16 20 C -0.15 -4.18 5.46 29.80 0.16 -4.02 16 21 C 0.51 20.74 6.75 87.56 0.59 21.33 16 22 O -0.59 -29.07 16.60 -3.10 -0.05 -29.12 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 25 H 0.01 0.68 5.63 -2.39 -0.01 0.67 16 26 H 0.08 3.39 8.04 -2.39 -0.02 3.37 16 27 H 0.06 2.92 7.34 -2.39 -0.02 2.90 16 28 H 0.10 4.27 5.49 -2.91 -0.02 4.26 16 29 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.41 7.54 8.96 -92.71 -0.83 6.71 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 36 H 0.09 2.39 7.63 -2.39 -0.02 2.37 16 Total: -1.00 -77.40 298.61 3.07 -74.33 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.26 Total: 14.13 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.93 Total: -5.75 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.10 Total: -101.28 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.40 3.07 -74.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695160847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.777 kcal (2) G-P(sol) polarization free energy of solvation -77.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds