Wall clock time and date at job start Mon Mar 30 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36012 * 117.00118 * 2 1 4 4 C 1.38416 * 120.00763 * 0.25310 * 3 2 1 5 5 C 1.38542 * 120.36860 * 180.25914 * 4 3 2 6 6 C 1.37783 * 120.38075 * 359.74682 * 5 4 3 7 7 C 1.39810 * 120.00819 * 359.97438 * 6 5 4 8 8 C 1.43203 * 120.18044 * 180.02562 * 7 6 5 9 9 N 5.85816 * 152.57140 * 359.69224 * 2 1 3 10 10 C 1.39288 * 120.00882 * 180.02562 * 3 2 1 11 11 N 1.39286 * 120.18974 * 0.02562 * 10 3 2 12 12 C 1.46905 * 110.99894 * 239.72372 * 11 10 3 13 13 H 1.09003 * 109.47224 * 325.00239 * 12 11 10 14 14 C 1.53002 * 109.47102 * 84.99911 * 12 11 10 15 15 C 1.52996 * 109.46819 * 204.99801 * 12 11 10 16 16 C 1.50704 * 109.47341 * 65.00385 * 15 12 11 17 17 H 1.08005 * 119.99728 * 359.97438 * 16 15 12 18 18 C 1.37872 * 119.99972 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47018 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47306 * 120.00511 * 20 18 16 23 23 H 1.48502 * 109.47079 * 240.00240 * 20 18 16 24 24 H 1.09000 * 109.47670 * 60.00160 * 1 2 3 25 25 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47397 * 300.00034 * 1 2 3 27 27 H 1.07998 * 119.82103 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.81344 * 179.76352 * 5 4 3 29 29 H 1.08006 * 119.99789 * 179.97438 * 6 5 4 30 30 H 1.00901 * 110.99883 * 3.67432 * 11 10 3 31 31 H 1.09003 * 109.46813 * 60.00077 * 14 12 11 32 32 H 1.08999 * 109.47105 * 180.02562 * 14 12 11 33 33 H 1.08996 * 109.46950 * 299.99914 * 14 12 11 34 34 H 1.09006 * 109.47142 * 184.99909 * 15 12 11 35 35 H 1.08991 * 109.47453 * 304.99990 * 15 12 11 36 36 H 0.96996 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2928 2.3728 0.0053 5 6 1.9140 3.6112 -0.0001 6 6 3.2889 3.7011 -0.0055 7 6 4.0656 2.5386 -0.0050 8 6 5.4948 2.6277 -0.0101 9 7 6.6286 2.6985 -0.0145 10 6 3.4375 1.2849 -0.0005 11 7 4.2001 0.1194 -0.0016 12 6 5.0674 0.0567 1.1824 13 1 5.4049 1.0609 1.4392 14 6 4.2851 -0.5344 2.3570 15 6 6.2793 -0.8270 0.8805 16 6 7.1168 -0.1815 -0.1934 17 1 6.8145 0.7643 -0.6183 18 6 8.2687 -0.7983 -0.6332 19 7 8.6364 -1.9502 -0.1161 20 14 9.3063 0.0015 -1.9649 21 1 8.6792 1.2825 -2.3785 22 1 10.6698 0.2644 -1.4389 23 1 9.3943 -0.9069 -3.1363 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2145 2.3131 0.0090 28 1 1.3172 4.5113 0.0003 29 1 3.7667 4.6697 -0.0101 30 1 3.6114 -0.6978 -0.0623 31 1 3.9477 -1.5385 2.1001 32 1 4.9285 -0.5804 3.2356 33 1 3.4218 0.0952 2.5720 34 1 6.8766 -0.9459 1.7846 35 1 5.9400 -1.8045 0.5381 36 1 9.4470 -2.3840 -0.4254 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:59 Heat of formation + Delta-G solvation = 25.688122 kcal Electronic energy + Delta-G solvation = -19487.307400 eV Core-core repulsion = 16551.370738 eV Total energy + Delta-G solvation = -2935.936661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47354 -38.05156 -36.38326 -35.48175 -32.88103 -31.30373 -30.43206 -28.11070 -27.31791 -27.19660 -23.62616 -22.78145 -21.91765 -19.90097 -18.99532 -17.14664 -16.36677 -16.14958 -15.94714 -15.80590 -14.62511 -14.49213 -14.16658 -13.77116 -13.45967 -13.12053 -12.75233 -12.68496 -12.24940 -12.16266 -11.95137 -11.79152 -11.63608 -11.35327 -11.26425 -11.04355 -10.96983 -10.60815 -10.45665 -10.07980 -9.79467 -8.97298 -8.78259 -8.43738 -8.19064 -7.28640 -5.81669 -3.78033 0.99615 1.48477 3.06244 3.34236 3.45124 3.51402 3.58714 3.62629 4.20960 4.39156 4.50766 4.66271 4.82838 4.96808 5.03872 5.09207 5.23277 5.36645 5.56136 5.58294 5.63852 5.66995 5.80928 5.96540 6.08581 6.23490 6.34634 6.44423 6.54790 6.62557 6.85604 7.17403 7.48132 7.65867 7.87066 7.90639 8.18500 8.28547 8.61116 9.28644 9.84774 11.30672 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.006694 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.621269 B = 4181.538002 C = 4805.287458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.062 3.938 4 C -0.160 4.160 5 C -0.128 4.128 6 C -0.082 4.082 7 C -0.022 4.022 8 C 0.235 3.765 9 N -0.372 5.372 10 C 0.161 3.839 11 N -0.600 5.600 12 C 0.085 3.915 13 H 0.074 0.926 14 C -0.176 4.176 15 C 0.030 3.970 16 C -0.493 4.493 17 H 0.074 0.926 18 C 0.053 3.947 19 N -0.906 5.906 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.289 1.289 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.363 0.637 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.020 0.980 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.904 7.925 2.300 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.014 3.986 4 C -0.180 4.180 5 C -0.147 4.147 6 C -0.103 4.103 7 C -0.029 4.029 8 C -0.080 4.080 9 N -0.048 5.048 10 C 0.055 3.945 11 N -0.221 5.221 12 C -0.021 4.021 13 H 0.092 0.908 14 C -0.234 4.234 15 C -0.007 4.007 16 C -0.532 4.532 17 H 0.092 0.908 18 C -0.146 4.146 19 N -0.547 5.547 20 Si 0.713 3.287 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.215 1.215 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.186 0.814 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.361 7.850 1.886 19.146 hybrid contribution -0.682 0.039 -0.298 0.746 sum -18.043 7.890 1.588 19.756 Atomic orbital electron populations 1.22998 0.78344 1.03815 1.01065 1.85997 1.21252 1.26314 1.89537 1.18835 0.91181 0.84979 1.03622 1.21168 0.99737 0.92043 1.05050 1.20584 0.93873 0.96891 1.03390 1.20915 0.93418 0.96769 0.99170 1.15452 0.85333 0.92094 1.10061 1.25022 0.92143 0.95675 0.95139 1.81267 1.11120 1.05482 1.06912 1.18396 0.87541 0.91735 0.96855 1.57273 1.22305 1.02714 1.39832 1.22178 0.93884 1.01672 0.84350 0.90778 1.22509 0.99924 1.00963 1.00030 1.19185 0.89960 0.94313 0.97273 1.21500 1.05861 1.06549 1.19243 0.90823 1.24937 0.97838 0.94956 0.96882 1.69978 1.24596 1.16544 1.43598 0.86623 0.80351 0.79664 0.82044 1.19540 1.21397 1.21525 0.92763 0.88353 0.92856 0.85416 0.85428 0.85148 0.81415 0.92446 0.91833 0.93890 0.95970 0.96178 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -3.97 9.35 -19.78 -0.18 -4.15 16 3 C 0.06 0.83 6.69 -39.13 -0.26 0.57 16 4 C -0.16 -1.69 9.03 -39.40 -0.36 -2.05 16 5 C -0.13 -1.30 10.02 -39.64 -0.40 -1.69 16 6 C -0.08 -1.01 9.75 -39.16 -0.38 -1.39 16 7 C -0.02 -0.37 5.49 -106.64 -0.59 -0.95 16 8 C 0.23 4.73 11.16 -22.47 -0.25 4.48 16 9 N -0.37 -8.62 16.17 41.84 0.68 -7.95 16 10 C 0.16 2.67 5.56 -83.34 -0.46 2.21 16 11 N -0.60 -11.61 5.77 -51.56 -0.30 -11.90 16 12 C 0.09 1.76 1.97 -67.71 -0.13 1.63 16 13 H 0.07 1.61 5.16 -51.93 -0.27 1.34 16 14 C -0.18 -2.99 9.14 37.16 0.34 -2.65 16 15 C 0.03 0.78 4.65 -27.88 -0.13 0.65 16 16 C -0.49 -14.36 8.61 -34.44 -0.30 -14.66 16 17 H 0.07 2.12 4.06 -52.48 -0.21 1.90 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.91 -28.41 13.29 55.43 0.74 -27.67 16 20 Si 0.88 23.86 29.54 -169.99 -5.02 18.84 16 21 H -0.27 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.13 0.98 6.27 -52.49 -0.33 0.65 16 28 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.36 6.55 7.24 -39.29 -0.28 6.27 16 31 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -34.29 303.98 -5.93 -40.22 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.40 Total: -0.86 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.02 Total: -11.10 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 1.12 Total: -47.52 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.18 Total: -4.15 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.29 -5.93 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.908 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds