Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36012 * 117.00118 * 2 1 4 4 C 1.38416 * 120.00763 * 0.25310 * 3 2 1 5 5 C 1.38542 * 120.36860 * 180.25914 * 4 3 2 6 6 C 1.37783 * 120.38075 * 359.74682 * 5 4 3 7 7 C 1.39810 * 120.00819 * 359.97438 * 6 5 4 8 8 C 1.43203 * 120.18044 * 180.02562 * 7 6 5 9 9 N 5.85816 * 152.57140 * 359.69224 * 2 1 3 10 10 C 1.39288 * 120.00882 * 180.02562 * 3 2 1 11 11 N 1.39286 * 120.18974 * 0.02562 * 10 3 2 12 12 C 1.46905 * 110.99894 * 239.72372 * 11 10 3 13 13 H 1.09003 * 109.47224 * 325.00239 * 12 11 10 14 14 C 1.53002 * 109.47102 * 84.99911 * 12 11 10 15 15 C 1.52996 * 109.46819 * 204.99801 * 12 11 10 16 16 C 1.50704 * 109.47341 * 65.00385 * 15 12 11 17 17 H 1.08005 * 119.99728 * 359.97438 * 16 15 12 18 18 C 1.37872 * 119.99972 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47018 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47306 * 120.00511 * 20 18 16 23 23 H 1.48502 * 109.47079 * 240.00240 * 20 18 16 24 24 H 1.09000 * 109.47670 * 60.00160 * 1 2 3 25 25 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47397 * 300.00034 * 1 2 3 27 27 H 1.07998 * 119.82103 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.81344 * 179.76352 * 5 4 3 29 29 H 1.08006 * 119.99789 * 179.97438 * 6 5 4 30 30 H 1.00901 * 110.99883 * 3.67432 * 11 10 3 31 31 H 1.09003 * 109.46813 * 60.00077 * 14 12 11 32 32 H 1.08999 * 109.47105 * 180.02562 * 14 12 11 33 33 H 1.08996 * 109.46950 * 299.99914 * 14 12 11 34 34 H 1.09006 * 109.47142 * 184.99909 * 15 12 11 35 35 H 1.08991 * 109.47453 * 304.99990 * 15 12 11 36 36 H 0.96996 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2928 2.3728 0.0053 5 6 1.9140 3.6112 -0.0001 6 6 3.2889 3.7011 -0.0055 7 6 4.0656 2.5386 -0.0050 8 6 5.4948 2.6277 -0.0101 9 7 6.6286 2.6985 -0.0145 10 6 3.4375 1.2849 -0.0005 11 7 4.2001 0.1194 -0.0016 12 6 5.0674 0.0567 1.1824 13 1 5.4049 1.0609 1.4392 14 6 4.2851 -0.5344 2.3570 15 6 6.2793 -0.8270 0.8805 16 6 7.1168 -0.1815 -0.1934 17 1 6.8145 0.7643 -0.6183 18 6 8.2687 -0.7983 -0.6332 19 7 8.6364 -1.9502 -0.1161 20 14 9.3063 0.0015 -1.9649 21 1 8.6792 1.2825 -2.3785 22 1 10.6698 0.2644 -1.4389 23 1 9.3943 -0.9069 -3.1363 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2145 2.3131 0.0090 28 1 1.3172 4.5113 0.0003 29 1 3.7667 4.6697 -0.0101 30 1 3.6114 -0.6978 -0.0623 31 1 3.9477 -1.5385 2.1001 32 1 4.9285 -0.5804 3.2356 33 1 3.4218 0.0952 2.5720 34 1 6.8766 -0.9459 1.7846 35 1 5.9400 -1.8045 0.5381 36 1 9.4470 -2.3840 -0.4254 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = 2.225097 kcal Electronic energy + Delta-G solvation = -19488.324833 eV Core-core repulsion = 16551.370738 eV Total energy + Delta-G solvation = -2936.954095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51784 -39.16057 -37.66785 -37.00632 -34.92529 -32.87849 -31.47487 -29.44402 -28.98795 -28.02125 -25.29153 -24.27028 -22.98192 -21.56819 -20.01789 -18.62719 -18.02557 -17.39517 -17.05756 -16.74866 -16.49010 -15.64832 -15.46760 -15.06904 -14.82242 -14.54130 -14.31845 -14.16222 -13.70120 -13.63418 -13.33972 -13.22310 -13.09332 -12.91218 -12.68846 -12.53773 -12.42597 -12.00438 -11.95114 -11.82187 -11.46143 -10.93793 -10.57713 -10.52486 -9.47442 -8.47303 -8.14372 -6.14914 -0.08965 0.51202 1.27991 1.29558 1.44955 1.87200 2.14858 2.41638 2.42883 2.91923 3.15738 3.22495 3.27207 3.98917 4.08928 4.16042 4.27695 4.31041 4.42768 4.52475 4.55874 4.61184 4.68804 4.84994 4.88719 5.07865 5.12046 5.17306 5.37025 5.44629 5.51249 5.58751 5.76802 5.89199 6.10180 6.33249 6.45166 6.64516 6.77355 7.01226 7.50410 8.98549 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.006694 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.621269 B = 4181.538002 C = 4805.287458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.064 3.936 4 C -0.144 4.144 5 C -0.105 4.105 6 C -0.079 4.079 7 C -0.053 4.053 8 C 0.259 3.741 9 N -0.447 5.447 10 C 0.130 3.870 11 N -0.623 5.623 12 C 0.098 3.902 13 H 0.061 0.939 14 C -0.163 4.163 15 C 0.035 3.965 16 C -0.497 4.497 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.940 5.940 20 Si 0.940 3.060 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.278 1.278 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.150 0.850 30 H 0.364 0.636 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H -0.007 1.007 35 H -0.002 1.002 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.721 9.859 2.011 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.254 6.254 3 C 0.016 3.984 4 C -0.163 4.163 5 C -0.124 4.124 6 C -0.099 4.099 7 C -0.060 4.060 8 C -0.055 4.055 9 N -0.124 5.124 10 C 0.025 3.975 11 N -0.245 5.245 12 C -0.009 4.009 13 H 0.079 0.921 14 C -0.222 4.222 15 C -0.002 4.002 16 C -0.535 4.535 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.583 5.583 20 Si 0.767 3.233 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.204 1.204 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.168 0.832 30 H 0.187 0.813 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.012 0.988 35 H 0.016 0.984 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.208 9.805 1.590 23.419 hybrid contribution 0.250 -0.489 -0.190 0.581 sum -20.958 9.316 1.400 22.978 Atomic orbital electron populations 1.23349 0.75804 1.05409 1.02667 1.85987 1.23856 1.26170 1.89395 1.18853 0.90062 0.86472 1.03034 1.21664 1.01593 0.90924 1.02168 1.21124 0.92942 0.98473 0.99828 1.21218 0.94419 0.96076 0.98227 1.15780 0.83502 0.93835 1.12838 1.25804 0.93103 0.93480 0.93076 1.81244 1.13234 1.07888 1.09986 1.18445 0.89020 0.90372 0.99664 1.57103 1.23420 1.04176 1.39806 1.21764 0.92876 0.99586 0.86654 0.92094 1.22359 1.00152 1.01406 0.98270 1.19038 0.91877 0.94266 0.95068 1.21959 1.05869 1.06492 1.19214 0.90491 1.25694 0.99361 0.95658 0.99138 1.70084 1.25261 1.17798 1.45153 0.85757 0.78914 0.78553 0.80059 1.20179 1.20883 1.20366 0.91186 0.87106 0.90970 0.81457 0.80922 0.83229 0.81253 0.91974 0.92004 0.91431 0.98842 0.98373 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.55 9.35 -93.68 -0.88 -8.42 16 3 C 0.06 1.52 6.69 22.57 0.15 1.67 16 4 C -0.14 -2.25 9.03 22.38 0.20 -2.05 16 5 C -0.10 -1.52 10.02 22.23 0.22 -1.30 16 6 C -0.08 -1.67 9.75 22.54 0.22 -1.45 16 7 C -0.05 -1.68 5.49 -21.17 -0.12 -1.79 16 8 C 0.26 10.65 11.16 88.33 0.99 11.63 16 9 N -0.45 -21.55 16.17 19.00 0.31 -21.24 16 10 C 0.13 4.16 5.56 38.69 0.22 4.38 16 11 N -0.62 -24.42 5.77 -317.03 -1.83 -26.25 16 12 C 0.10 4.19 1.97 44.91 0.09 4.28 16 13 H 0.06 2.75 5.16 -2.39 -0.01 2.74 16 14 C -0.16 -5.54 9.14 71.98 0.66 -4.89 16 15 C 0.03 1.92 4.65 29.85 0.14 2.06 16 16 C -0.50 -30.15 8.61 25.60 0.22 -29.93 16 17 H 0.08 4.60 4.06 -2.91 -0.01 4.59 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 19 N -0.94 -61.05 13.29 21.45 0.28 -60.77 16 20 Si 0.94 50.58 29.54 68.60 2.03 52.60 16 21 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.28 -14.86 7.11 99.48 0.71 -14.16 16 23 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 24 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.55 7.65 -2.38 -0.02 0.54 16 27 H 0.17 1.34 6.27 -2.91 -0.02 1.32 16 28 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.36 13.37 7.24 -89.69 -0.65 12.72 16 31 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.95 8.03 -2.39 -0.02 1.93 16 34 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 35 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -79.41 303.98 4.93 -74.48 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.46 Total: 5.37 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.56 Total: -15.76 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -1.24 Total: -108.26 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.88 Total: -8.42 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.03 Total: 52.60 kcal Total: -79.41 4.93 -74.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.704 kcal (2) G-P(sol) polarization free energy of solvation -79.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds