Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47040 * 2 1 4 4 C 1.52998 * 109.47074 * 239.99750 * 2 1 3 5 5 C 1.50695 * 109.46877 * 174.99803 * 4 2 1 6 6 H 1.07997 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00037 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00013 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47097 * 90.00331 * 9 7 5 11 11 H 1.48504 * 109.47027 * 209.99883 * 9 7 5 12 12 H 1.48502 * 109.47591 * 330.00182 * 9 7 5 13 13 S 1.81396 * 109.47043 * 119.99773 * 2 1 3 14 14 O 1.42101 * 108.57863 * 190.51261 * 13 2 1 15 15 O 1.42099 * 108.58108 * 59.48665 * 13 2 1 16 16 C 1.81404 * 101.92306 * 305.00136 * 13 2 1 17 17 C 1.53003 * 109.47164 * 179.97438 * 16 13 2 18 18 C 1.55238 * 110.46855 * 289.81018 * 17 16 13 19 19 C 1.54894 * 102.58338 * 203.39183 * 18 17 16 20 20 C 1.54266 * 104.31305 * 37.93170 * 19 18 17 21 21 C 1.53869 * 106.60031 * 336.32486 * 20 19 18 22 22 H 1.08993 * 109.47139 * 60.00077 * 1 2 3 23 23 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47233 * 299.99941 * 1 2 3 25 25 H 1.09000 * 109.47126 * 294.99970 * 4 2 1 26 26 H 1.09005 * 109.46745 * 55.00187 * 4 2 1 27 27 H 0.97000 * 120.00097 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47151 * 60.00174 * 16 13 2 29 29 H 1.08995 * 109.46843 * 299.99763 * 16 13 2 30 30 H 1.09007 * 110.43010 * 52.46158 * 17 16 13 31 31 H 1.08996 * 110.89448 * 85.10747 * 18 17 16 32 32 H 1.08993 * 110.76342 * 321.62413 * 18 17 16 33 33 H 1.09002 * 110.48891 * 279.18596 * 19 18 17 34 34 H 1.08998 * 110.48494 * 156.67683 * 19 18 17 35 35 H 1.09001 * 110.03084 * 95.60669 * 20 19 18 36 36 H 1.08996 * 110.03108 * 216.98559 * 20 19 18 37 37 H 1.08999 * 110.04012 * 119.28327 * 21 20 19 38 38 H 1.09003 * 110.03070 * 240.71854 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8361 -3.3004 9 14 6.0921 -1.0614 -2.4365 10 1 6.7000 -2.2147 -1.7254 11 1 6.5296 -1.0685 -3.8557 12 1 6.5269 0.2033 -1.7908 13 16 2.1347 -0.8551 1.4811 14 8 3.5342 -0.6349 1.5914 15 8 1.6409 -2.1874 1.4681 16 6 1.2998 0.0578 2.8079 17 6 1.6962 -0.5342 4.1620 18 6 1.0656 -1.9409 4.3450 19 6 1.0380 -2.1006 5.8854 20 6 0.6803 -0.6940 6.4083 21 6 1.0987 0.3019 5.3125 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7517 -1.7716 -1.2055 26 1 1.6054 -0.2617 -2.1369 27 1 4.0607 -2.2423 -4.0362 28 1 0.2203 -0.0209 2.6795 29 1 1.5949 1.1063 2.7690 30 1 2.7813 -0.5861 4.2516 31 1 1.6895 -2.7091 3.8882 32 1 0.0558 -1.9679 3.9356 33 1 2.0166 -2.4074 6.2548 34 1 0.2765 -2.8224 6.1805 35 1 -0.3928 -0.6238 6.5867 36 1 1.2258 -0.4881 7.3291 37 1 0.2288 0.8555 4.9590 38 1 1.8481 0.9915 5.7011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = -104.580865 kcal Electronic energy + Delta-G solvation = -18487.932418 eV Core-core repulsion = 15649.498070 eV Total energy + Delta-G solvation = -2838.434348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.35491 -36.19405 -35.23245 -34.78756 -32.27464 -31.54862 -28.75960 -27.68800 -25.36695 -23.51093 -21.24152 -20.62434 -19.89039 -18.02052 -16.74178 -16.43135 -15.85580 -15.29359 -15.07194 -14.76375 -14.45199 -13.74225 -13.43447 -13.33631 -12.73228 -12.40188 -12.27236 -11.89778 -11.76883 -11.54251 -11.34924 -11.31235 -11.18808 -11.03583 -10.90642 -10.88679 -10.68393 -10.62811 -10.54030 -10.48714 -10.04688 -9.75608 -9.32377 -8.99637 -8.37722 -6.04539 -4.09580 0.68941 3.37647 3.43388 3.49503 3.54657 4.24295 4.39620 4.48195 4.51469 4.63254 4.71045 5.05293 5.15482 5.31911 5.33258 5.38683 5.42418 5.43597 5.54920 5.58047 5.63388 5.69759 5.74890 5.82631 5.89282 5.99354 6.11043 6.22832 6.23887 6.32132 6.42964 6.50680 7.43906 7.48563 7.95470 8.20796 9.00916 9.58963 11.06431 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.005757 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.582277 B = 4862.161294 C = 5201.513885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.550 4.550 3 H 0.123 0.877 4 C 0.038 3.962 5 C -0.552 4.552 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 S 2.424 3.576 14 O -0.929 6.929 15 O -0.941 6.941 16 C -0.628 4.628 17 C -0.081 4.081 18 C -0.137 4.137 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.113 4.113 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 4.436 15.677 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.662 4.662 3 H 0.141 0.859 4 C 0.000 4.000 5 C -0.590 4.590 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.606 3.394 14 O -0.926 6.926 15 O -0.939 6.939 16 C -0.754 4.754 17 C -0.100 4.100 18 C -0.174 4.174 19 C -0.163 4.163 20 C -0.163 4.163 21 C -0.152 4.152 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.495 3.637 15.611 17.695 hybrid contribution 0.420 0.889 -0.298 1.027 sum -7.075 4.526 15.313 17.464 Atomic orbital electron populations 1.21748 0.92403 1.03293 1.02728 1.30039 1.03853 1.13060 1.19199 0.85916 1.19020 0.96553 0.95490 0.88949 1.21607 0.91303 1.36178 1.09943 0.90306 1.24970 0.98947 0.94541 0.95263 1.69965 1.35926 1.35238 1.11892 0.86531 0.85212 0.79143 0.76910 1.20214 1.21219 1.19424 1.08214 0.76418 0.77248 0.77556 1.93537 1.27548 1.86279 1.85275 1.93493 1.82114 1.32306 1.85954 1.30680 1.14617 1.14767 1.15287 1.21762 1.01020 0.95601 0.91643 1.22911 1.02159 0.96078 0.96264 1.22358 1.01677 0.96734 0.95494 1.22149 1.01003 0.95013 0.98140 1.22178 1.00615 0.97673 0.94727 0.90728 0.91069 0.92746 0.94700 0.94052 0.92747 0.85414 0.85554 0.89400 0.89865 0.90496 0.91473 0.91487 0.91872 0.91908 0.91420 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.90 37.16 0.33 -1.82 16 2 C -0.55 -10.57 2.75 -26.73 -0.07 -10.64 16 3 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 4 C 0.04 0.97 4.44 -27.89 -0.12 0.85 16 5 C -0.55 -15.89 8.27 -34.44 -0.28 -16.18 16 6 H 0.08 2.25 6.20 -52.49 -0.33 1.92 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 S 2.42 46.48 3.95 -107.50 -0.42 46.05 16 14 O -0.93 -21.43 16.05 -57.83 -0.93 -22.36 16 15 O -0.94 -20.28 16.39 -57.83 -0.95 -21.23 16 16 C -0.63 -8.16 4.53 37.16 0.17 -8.00 16 17 C -0.08 -1.04 2.86 -88.77 -0.25 -1.29 16 18 C -0.14 -1.76 5.35 -24.55 -0.13 -1.89 16 19 C -0.13 -1.29 6.82 -25.07 -0.17 -1.46 16 20 C -0.13 -1.15 6.80 -25.62 -0.17 -1.33 16 21 C -0.11 -1.15 6.37 -25.62 -0.16 -1.31 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.59 6.39 -51.93 -0.33 0.26 16 25 H 0.03 0.95 8.09 -51.93 -0.42 0.53 16 26 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.13 1.35 6.65 -51.93 -0.35 1.01 16 29 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.21 7.43 -51.93 -0.39 0.83 16 32 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.62 7.84 -51.93 -0.41 0.22 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -34.28 311.52 -9.28 -43.56 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.41 Total: -0.83 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: -0.97 Total: -41.25 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.88 Total: -43.58 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 46.48 SS G_CDS: -0.42 Total: 46.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.28 -9.28 -43.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.018 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds