Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47040 * 2 1 4 4 C 1.52998 * 109.47074 * 239.99750 * 2 1 3 5 5 C 1.50695 * 109.46877 * 174.99803 * 4 2 1 6 6 H 1.07997 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00037 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99941 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00013 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47097 * 90.00331 * 9 7 5 11 11 H 1.48504 * 109.47027 * 209.99883 * 9 7 5 12 12 H 1.48502 * 109.47591 * 330.00182 * 9 7 5 13 13 S 1.81396 * 109.47043 * 119.99773 * 2 1 3 14 14 O 1.42101 * 108.57863 * 190.51261 * 13 2 1 15 15 O 1.42099 * 108.58108 * 59.48665 * 13 2 1 16 16 C 1.81404 * 101.92306 * 305.00136 * 13 2 1 17 17 C 1.53003 * 109.47164 * 179.97438 * 16 13 2 18 18 C 1.55238 * 110.46855 * 289.81018 * 17 16 13 19 19 C 1.54894 * 102.58338 * 203.39183 * 18 17 16 20 20 C 1.54266 * 104.31305 * 37.93170 * 19 18 17 21 21 C 1.53869 * 106.60031 * 336.32486 * 20 19 18 22 22 H 1.08993 * 109.47139 * 60.00077 * 1 2 3 23 23 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47233 * 299.99941 * 1 2 3 25 25 H 1.09000 * 109.47126 * 294.99970 * 4 2 1 26 26 H 1.09005 * 109.46745 * 55.00187 * 4 2 1 27 27 H 0.97000 * 120.00097 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47151 * 60.00174 * 16 13 2 29 29 H 1.08995 * 109.46843 * 299.99763 * 16 13 2 30 30 H 1.09007 * 110.43010 * 52.46158 * 17 16 13 31 31 H 1.08996 * 110.89448 * 85.10747 * 18 17 16 32 32 H 1.08993 * 110.76342 * 321.62413 * 18 17 16 33 33 H 1.09002 * 110.48891 * 279.18596 * 19 18 17 34 34 H 1.08998 * 110.48494 * 156.67683 * 19 18 17 35 35 H 1.09001 * 110.03084 * 95.60669 * 20 19 18 36 36 H 1.08996 * 110.03108 * 216.98559 * 20 19 18 37 37 H 1.08999 * 110.04012 * 119.28327 * 21 20 19 38 38 H 1.09003 * 110.03070 * 240.71854 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8361 -3.3004 9 14 6.0921 -1.0614 -2.4365 10 1 6.7000 -2.2147 -1.7254 11 1 6.5296 -1.0685 -3.8557 12 1 6.5269 0.2033 -1.7908 13 16 2.1347 -0.8551 1.4811 14 8 3.5342 -0.6349 1.5914 15 8 1.6409 -2.1874 1.4681 16 6 1.2998 0.0578 2.8079 17 6 1.6962 -0.5342 4.1620 18 6 1.0656 -1.9409 4.3450 19 6 1.0380 -2.1006 5.8854 20 6 0.6803 -0.6940 6.4083 21 6 1.0987 0.3019 5.3125 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7517 -1.7716 -1.2055 26 1 1.6054 -0.2617 -2.1369 27 1 4.0607 -2.2423 -4.0362 28 1 0.2203 -0.0209 2.6795 29 1 1.5949 1.1063 2.7690 30 1 2.7813 -0.5861 4.2516 31 1 1.6895 -2.7091 3.8882 32 1 0.0558 -1.9679 3.9356 33 1 2.0166 -2.4074 6.2548 34 1 0.2765 -2.8224 6.1805 35 1 -0.3928 -0.6238 6.5867 36 1 1.2258 -0.4881 7.3291 37 1 0.2288 0.8555 4.9590 38 1 1.8481 0.9915 5.7011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -128.099474 kcal Electronic energy + Delta-G solvation = -18488.952262 eV Core-core repulsion = 15649.498070 eV Total energy + Delta-G solvation = -2839.454192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.23214 -37.79095 -36.87565 -36.50890 -34.23195 -32.60622 -29.58063 -29.50980 -26.40372 -25.36927 -22.92061 -21.48237 -20.79792 -19.52959 -18.66425 -17.99094 -17.20210 -16.68211 -16.57801 -16.17275 -15.76352 -14.94464 -14.76697 -14.27401 -14.23190 -14.10171 -13.74670 -13.39062 -13.19995 -12.99745 -12.83750 -12.76231 -12.71108 -12.49559 -12.34339 -12.09682 -11.91548 -11.90137 -11.66562 -11.56954 -11.41718 -11.22915 -11.21435 -10.77542 -10.50530 -8.28939 -6.40322 -0.76381 1.33410 1.37335 1.48121 2.11399 2.36762 2.92239 3.06737 3.24123 3.51241 3.59062 3.73673 3.93613 3.98627 4.24941 4.25237 4.40832 4.47191 4.60374 4.64200 4.68981 4.77429 4.85686 4.86170 4.93556 5.01957 5.13011 5.23703 5.25357 5.31528 5.34002 5.39553 5.43479 5.51984 5.71710 6.03279 6.78266 7.31492 8.82836 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.005757 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.582277 B = 4862.161294 C = 5201.513885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.552 4.552 3 H 0.143 0.857 4 C 0.037 3.963 5 C -0.569 4.569 6 H 0.076 0.924 7 C 0.007 3.993 8 N -0.926 5.926 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.260 1.260 13 S 2.400 3.600 14 O -0.984 6.984 15 O -0.982 6.982 16 C -0.586 4.586 17 C -0.094 4.094 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.108 4.108 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.108 0.892 25 H 0.001 0.999 26 H 0.024 0.976 27 H 0.267 0.733 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 6.720 18.051 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.663 4.663 3 H 0.161 0.839 4 C -0.001 4.001 5 C -0.607 4.607 6 H 0.094 0.906 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.184 1.184 13 S 2.589 3.411 14 O -0.981 6.981 15 O -0.979 6.979 16 C -0.718 4.718 17 C -0.113 4.113 18 C -0.186 4.186 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.147 4.147 22 H 0.099 0.901 23 H 0.080 0.920 24 H 0.127 0.873 25 H 0.019 0.981 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.182 0.818 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.765 5.893 17.922 20.803 hybrid contribution 0.758 0.172 -0.949 1.227 sum -8.007 6.065 16.973 19.723 Atomic orbital electron populations 1.21853 0.88886 1.03767 1.05768 1.29935 1.06990 1.12992 1.16419 0.83930 1.18820 0.95130 0.94278 0.91900 1.22042 0.93298 1.35709 1.09607 0.90552 1.25884 1.03701 0.94425 0.95172 1.70065 1.37701 1.36231 1.12582 0.85652 0.79779 0.79309 0.77754 1.20318 1.19499 1.18385 1.08402 0.76073 0.77503 0.79086 1.93463 1.31347 1.86964 1.86339 1.93442 1.82241 1.35371 1.86870 1.30329 1.15561 1.14979 1.10958 1.21937 1.00631 0.96268 0.92509 1.22988 1.01891 0.95522 0.98192 1.22383 1.02057 0.98364 0.93508 1.22166 1.02211 0.93413 0.98230 1.22203 1.01512 0.97566 0.93422 0.90095 0.91951 0.87343 0.98092 0.95736 0.92443 0.81595 0.81805 0.90864 0.93065 0.89689 0.91830 0.90382 0.90283 0.90725 0.89360 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.90 71.98 0.64 -3.35 16 2 C -0.55 -20.95 2.75 30.60 0.08 -20.87 16 3 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 4 C 0.04 1.95 4.44 29.85 0.13 2.08 16 5 C -0.57 -33.85 8.27 25.60 0.21 -33.64 16 6 H 0.08 4.49 6.20 -2.91 -0.02 4.47 16 7 C 0.01 0.43 5.46 84.66 0.46 0.90 16 8 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.95 47.22 29.54 68.60 2.03 49.25 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 13 S 2.40 92.12 3.95 -56.49 -0.22 91.89 16 14 O -0.98 -46.73 16.05 -127.37 -2.04 -48.77 16 15 O -0.98 -43.95 16.39 -127.37 -2.09 -46.04 16 16 C -0.59 -12.96 4.53 71.98 0.33 -12.64 16 17 C -0.09 -2.15 2.86 -9.60 -0.03 -2.17 16 18 C -0.15 -3.63 5.35 32.01 0.17 -3.46 16 19 C -0.13 -2.32 6.82 31.67 0.22 -2.10 16 20 C -0.12 -1.75 6.80 31.32 0.21 -1.53 16 21 C -0.11 -1.68 6.37 31.32 0.20 -1.48 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.11 1.79 6.39 -2.39 -0.02 1.77 16 25 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 26 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.17 2.51 6.65 -2.39 -0.02 2.50 16 29 H 0.16 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.55 7.43 -2.39 -0.02 1.54 16 32 H 0.08 1.89 7.97 -2.39 -0.02 1.87 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.05 7.84 -2.39 -0.02 1.03 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.17 311.52 1.60 -78.57 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.01 Total: 11.09 kcal Atomic # 6 Polarization: -80.90 SS G_CDS: 2.63 Total: -78.27 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.28 Total: -57.72 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -4.13 Total: -94.81 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.22 Total: 91.89 kcal Total: -80.17 1.60 -78.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.529 kcal (2) G-P(sol) polarization free energy of solvation -80.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds