Wall clock time and date at job start Mon Mar 30 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47094 * 120.00009 * 2 1 3 5 5 C 1.50702 * 109.47139 * 185.00274 * 4 2 1 6 6 H 1.07999 * 119.99587 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00466 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99541 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00562 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47083 * 59.99636 * 9 7 5 11 11 H 1.48499 * 109.47510 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47153 * 300.00247 * 9 7 5 13 13 S 1.81396 * 109.47054 * 240.00537 * 2 1 3 14 14 O 1.42100 * 108.57717 * 300.61140 * 13 2 1 15 15 O 1.42102 * 108.57850 * 169.59332 * 13 2 1 16 16 C 1.81398 * 101.92455 * 55.10157 * 13 2 1 17 17 C 1.53000 * 109.46926 * 61.24703 * 16 13 2 18 18 C 1.53005 * 109.46776 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47386 * 300.00251 * 18 17 16 20 20 C 1.52992 * 109.46918 * 60.00115 * 19 18 17 21 21 C 1.53001 * 109.47084 * 181.24861 * 16 13 2 22 22 H 1.09000 * 109.47000 * 294.32488 * 1 2 3 23 23 H 1.08999 * 109.47241 * 54.32364 * 1 2 3 24 24 H 1.08996 * 109.46832 * 174.32343 * 1 2 3 25 25 H 1.09006 * 109.47210 * 304.99969 * 4 2 1 26 26 H 1.09002 * 109.46998 * 65.00150 * 4 2 1 27 27 H 0.97001 * 119.99366 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46856 * 301.24467 * 16 13 2 29 29 H 1.09001 * 109.46698 * 60.00385 * 17 16 13 30 30 H 1.08992 * 109.47042 * 300.00113 * 17 16 13 31 31 H 1.08997 * 109.46664 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46965 * 60.00827 * 18 17 16 33 33 H 1.08998 * 109.46570 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.46828 * 300.00076 * 19 18 17 35 35 H 1.08996 * 109.47774 * 59.99934 * 20 19 18 36 36 H 1.09004 * 109.47114 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46828 * 300.00078 * 21 16 13 38 38 H 1.09004 * 109.46989 * 59.99973 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2306 -1.1934 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0922 -1.0621 2.4361 10 1 6.4855 0.3686 2.4957 11 1 6.5873 -1.7621 3.6486 12 1 6.6840 -1.6880 1.2263 13 16 2.1347 -0.8550 -1.4812 14 8 1.6389 -2.1866 -1.4693 15 8 3.5347 -0.6369 -1.5900 16 6 1.3023 0.0599 -2.8081 17 6 1.7425 1.5247 -2.7715 18 6 1.0409 2.2962 -3.8911 19 6 1.4141 1.6850 -5.2432 20 6 0.9738 0.2203 -5.2797 21 6 1.6750 -0.5511 -4.1604 22 1 -0.3633 0.4233 0.9364 23 1 -0.3634 0.5993 -0.8348 24 1 -0.3633 -1.0226 -0.1016 25 1 1.6054 -0.2617 2.1370 26 1 1.7517 -1.7715 1.2055 27 1 4.0610 -2.2445 4.0348 28 1 0.2230 0.0012 -2.6680 29 1 2.8219 1.5832 -2.9116 30 1 1.4770 1.9599 -1.8081 31 1 1.3542 3.3398 -3.8647 32 1 -0.0386 2.2377 -3.7514 33 1 0.9146 2.2350 -6.0407 34 1 2.4935 1.7436 -5.3827 35 1 -0.1055 0.1616 -5.1400 36 1 1.2401 -0.2153 -6.2427 37 1 2.7544 -0.4925 -4.3003 38 1 1.3613 -1.5947 -4.1864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695891866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:51 Heat of formation + Delta-G solvation = -108.634160 kcal Electronic energy + Delta-G solvation = -18842.276425 eV Core-core repulsion = 16003.666313 eV Total energy + Delta-G solvation = -2838.610113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.42064 -36.22326 -35.23930 -34.82902 -32.26455 -31.07769 -30.84600 -27.57450 -23.55302 -23.10310 -22.82756 -21.00834 -19.96417 -17.95653 -16.71379 -16.42599 -15.87082 -15.10277 -14.80368 -14.52711 -14.31933 -14.19834 -13.52462 -13.02545 -12.69387 -12.67314 -12.35020 -12.19484 -11.90914 -11.56470 -11.54023 -11.33678 -11.25954 -11.17674 -11.13109 -10.85849 -10.67289 -10.62373 -10.48208 -10.33290 -9.80909 -9.72885 -9.28553 -8.98766 -8.36583 -6.03904 -4.08991 0.68983 3.39270 3.41956 3.49392 3.52249 4.24891 4.35752 4.48633 4.61378 4.75233 4.78970 5.04931 5.10803 5.20150 5.33672 5.33983 5.40438 5.43059 5.45289 5.49199 5.65028 5.72150 5.84969 5.89847 5.98572 6.00690 6.05287 6.06999 6.11853 6.27654 6.44491 6.52717 7.44307 7.48942 7.95985 8.21302 9.01226 9.59421 11.07054 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.030837 B = 0.006432 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.773229 B = 4352.313681 C = 4575.952627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.547 4.547 3 H 0.125 0.875 4 C 0.038 3.962 5 C -0.552 4.552 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.271 1.271 13 S 2.423 3.577 14 O -0.948 6.948 15 O -0.926 6.926 16 C -0.590 4.590 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.106 4.106 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 7.601 -14.545 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.659 4.659 3 H 0.143 0.857 4 C 0.000 4.000 5 C -0.590 4.590 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.196 1.196 13 S 2.606 3.394 14 O -0.945 6.945 15 O -0.923 6.923 16 C -0.696 4.696 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.144 4.144 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.991 6.768 -14.469 17.436 hybrid contribution 0.373 0.687 0.285 0.832 sum -6.618 7.455 -14.184 17.337 Atomic orbital electron populations 1.21747 0.92412 1.02822 1.03207 1.30006 1.03839 1.13110 1.18898 0.85711 1.19024 0.96565 0.95461 0.88962 1.21569 0.91287 1.36197 1.09975 0.90304 1.24970 0.98930 0.94535 0.95294 1.69963 1.36017 1.35157 1.11915 0.86600 0.85205 0.78502 0.77570 1.19960 1.21238 1.19570 1.08317 0.76484 0.76911 0.77699 1.93487 1.82236 1.32697 1.86087 1.93524 1.27399 1.86189 1.85177 1.30447 1.14110 1.09343 1.15674 1.21401 1.01983 0.90913 1.00289 1.21457 1.00377 0.98830 0.94294 1.21566 1.01540 0.95741 0.97148 1.21438 1.00292 0.95328 0.97774 1.21313 1.01798 0.99562 0.91765 0.90613 0.92581 0.91309 0.94000 0.94839 0.92703 0.85163 0.89823 0.90404 0.91578 0.91849 0.92029 0.91685 0.91762 0.91620 0.90430 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.74 37.16 0.32 -1.85 16 2 C -0.55 -10.55 2.22 -26.73 -0.06 -10.61 16 3 H 0.12 2.16 7.16 -51.93 -0.37 1.79 16 4 C 0.04 0.97 4.44 -27.88 -0.12 0.85 16 5 C -0.55 -15.88 8.27 -34.44 -0.28 -16.17 16 6 H 0.08 2.23 6.19 -52.49 -0.33 1.91 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 S 2.42 47.54 3.55 -107.50 -0.38 47.16 16 14 O -0.95 -21.48 17.91 -57.83 -1.04 -22.52 16 15 O -0.93 -21.38 15.81 -57.83 -0.91 -22.29 16 16 C -0.59 -7.95 2.02 -26.73 -0.05 -8.00 16 17 C -0.11 -1.29 4.97 -26.73 -0.13 -1.42 16 18 C -0.11 -1.07 5.92 -26.73 -0.16 -1.22 16 19 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 20 C -0.11 -1.08 5.92 -26.76 -0.16 -1.24 16 21 C -0.11 -1.34 5.21 -26.75 -0.14 -1.48 16 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.06 0.62 6.71 -51.93 -0.35 0.28 16 24 H 0.07 1.05 8.03 -51.93 -0.42 0.64 16 25 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.13 1.46 6.84 -51.93 -0.36 1.10 16 29 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 30 H 0.08 0.85 6.73 -51.93 -0.35 0.50 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -34.54 308.02 -9.38 -43.93 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.37 Total: -1.59 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: -1.04 Total: -40.60 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.95 Total: -44.81 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 47.54 SS G_CDS: -0.38 Total: 47.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.54 -9.38 -43.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.707 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds