Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47094 * 120.00009 * 2 1 3 5 5 C 1.50702 * 109.47139 * 185.00274 * 4 2 1 6 6 H 1.07999 * 119.99587 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00466 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99541 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00562 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47083 * 59.99636 * 9 7 5 11 11 H 1.48499 * 109.47510 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47153 * 300.00247 * 9 7 5 13 13 S 1.81396 * 109.47054 * 240.00537 * 2 1 3 14 14 O 1.42100 * 108.57717 * 300.61140 * 13 2 1 15 15 O 1.42102 * 108.57850 * 169.59332 * 13 2 1 16 16 C 1.81398 * 101.92455 * 55.10157 * 13 2 1 17 17 C 1.53000 * 109.46926 * 61.24703 * 16 13 2 18 18 C 1.53005 * 109.46776 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47386 * 300.00251 * 18 17 16 20 20 C 1.52992 * 109.46918 * 60.00115 * 19 18 17 21 21 C 1.53001 * 109.47084 * 181.24861 * 16 13 2 22 22 H 1.09000 * 109.47000 * 294.32488 * 1 2 3 23 23 H 1.08999 * 109.47241 * 54.32364 * 1 2 3 24 24 H 1.08996 * 109.46832 * 174.32343 * 1 2 3 25 25 H 1.09006 * 109.47210 * 304.99969 * 4 2 1 26 26 H 1.09002 * 109.46998 * 65.00150 * 4 2 1 27 27 H 0.97001 * 119.99366 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46856 * 301.24467 * 16 13 2 29 29 H 1.09001 * 109.46698 * 60.00385 * 17 16 13 30 30 H 1.08992 * 109.47042 * 300.00113 * 17 16 13 31 31 H 1.08997 * 109.46664 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46965 * 60.00827 * 18 17 16 33 33 H 1.08998 * 109.46570 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.46828 * 300.00076 * 19 18 17 35 35 H 1.08996 * 109.47774 * 59.99934 * 20 19 18 36 36 H 1.09004 * 109.47114 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46828 * 300.00078 * 21 16 13 38 38 H 1.09004 * 109.46989 * 59.99973 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2306 -1.1934 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0922 -1.0621 2.4361 10 1 6.4855 0.3686 2.4957 11 1 6.5873 -1.7621 3.6486 12 1 6.6840 -1.6880 1.2263 13 16 2.1347 -0.8550 -1.4812 14 8 1.6389 -2.1866 -1.4693 15 8 3.5347 -0.6369 -1.5900 16 6 1.3023 0.0599 -2.8081 17 6 1.7425 1.5247 -2.7715 18 6 1.0409 2.2962 -3.8911 19 6 1.4141 1.6850 -5.2432 20 6 0.9738 0.2203 -5.2797 21 6 1.6750 -0.5511 -4.1604 22 1 -0.3633 0.4233 0.9364 23 1 -0.3634 0.5993 -0.8348 24 1 -0.3633 -1.0226 -0.1016 25 1 1.6054 -0.2617 2.1370 26 1 1.7517 -1.7715 1.2055 27 1 4.0610 -2.2445 4.0348 28 1 0.2230 0.0012 -2.6680 29 1 2.8219 1.5832 -2.9116 30 1 1.4770 1.9599 -1.8081 31 1 1.3542 3.3398 -3.8647 32 1 -0.0386 2.2377 -3.7514 33 1 0.9146 2.2350 -6.0407 34 1 2.4935 1.7436 -5.3827 35 1 -0.1055 0.1616 -5.1400 36 1 1.2401 -0.2153 -6.2427 37 1 2.7544 -0.4925 -4.3003 38 1 1.3613 -1.5947 -4.1864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695891866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -132.602689 kcal Electronic energy + Delta-G solvation = -18843.315779 eV Core-core repulsion = 16003.666313 eV Total energy + Delta-G solvation = -2839.649466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.31829 -37.86451 -36.91652 -36.57287 -34.24893 -32.07076 -31.72295 -29.41911 -25.41213 -24.14210 -23.77297 -22.59921 -20.83280 -19.48314 -18.66249 -18.03048 -17.28920 -16.66858 -16.41139 -16.02481 -15.24894 -15.09046 -14.83725 -14.39186 -14.22938 -14.08267 -13.62783 -13.55720 -13.32808 -13.15045 -12.97972 -12.88800 -12.70155 -12.58595 -12.52262 -12.36007 -12.10718 -12.07396 -11.63282 -11.40979 -11.31695 -11.16613 -11.08003 -10.69706 -10.42414 -8.28846 -6.40294 -0.80230 1.33284 1.38493 1.46661 2.04748 2.36707 2.88061 3.05508 3.15181 3.51367 3.59577 3.93904 3.95210 4.01293 4.21632 4.26306 4.38241 4.39809 4.46090 4.57535 4.59941 4.81257 4.88032 4.91275 5.00618 5.04319 5.21482 5.22520 5.26735 5.31138 5.33031 5.35196 5.39693 5.55477 5.71543 6.02932 6.77946 7.31383 8.82768 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.030837 B = 0.006432 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.773229 B = 4352.313681 C = 4575.952627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.545 4.545 3 H 0.146 0.854 4 C 0.037 3.963 5 C -0.569 4.569 6 H 0.077 0.923 7 C 0.007 3.993 8 N -0.926 5.926 9 Si 0.951 3.049 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.276 1.276 13 S 2.394 3.606 14 O -0.995 6.995 15 O -0.977 6.977 16 C -0.543 4.543 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.105 4.105 21 C -0.119 4.119 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.060 0.940 25 H 0.027 0.973 26 H -0.002 1.002 27 H 0.267 0.733 28 H 0.167 0.833 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 10.044 -16.681 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.657 4.657 3 H 0.164 0.836 4 C -0.001 4.001 5 C -0.607 4.607 6 H 0.095 0.905 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.775 3.225 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.202 1.202 13 S 2.585 3.415 14 O -0.993 6.993 15 O -0.975 6.975 16 C -0.656 4.656 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.164 4.164 20 C -0.144 4.144 21 C -0.158 4.158 22 H 0.100 0.900 23 H 0.127 0.873 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.016 0.984 27 H 0.076 0.924 28 H 0.185 0.815 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.320 9.178 -16.539 20.664 hybrid contribution 0.743 -0.044 0.846 1.127 sum -7.577 9.133 -15.693 19.675 Atomic orbital electron populations 1.21852 0.88897 1.03611 1.05898 1.29861 1.06934 1.13029 1.15875 0.83625 1.18832 0.95225 0.94146 0.91915 1.22008 0.93235 1.35764 1.09664 0.90472 1.25889 1.03720 0.94408 0.95190 1.70068 1.37779 1.36138 1.12589 0.85709 0.79703 0.79491 0.77626 1.18086 1.19810 1.20192 1.08702 0.76260 0.77116 0.79427 1.93420 1.82474 1.36218 1.87141 1.93450 1.30978 1.86798 1.86228 1.30038 1.14730 1.08970 1.11813 1.21623 1.01797 0.89696 1.02594 1.21500 1.01166 0.99077 0.92864 1.21633 1.01444 0.95431 0.97869 1.21473 1.00828 0.95304 0.96779 1.21525 1.01834 1.00156 0.92287 0.89961 0.87337 0.92080 0.95445 0.98400 0.92440 0.81509 0.91197 0.88935 0.90035 0.89877 0.89733 0.92475 0.90058 0.90278 0.91547 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.74 71.98 0.63 -3.44 16 2 C -0.55 -20.97 2.22 30.60 0.07 -20.90 16 3 H 0.15 4.88 7.16 -2.39 -0.02 4.86 16 4 C 0.04 1.97 4.44 29.85 0.13 2.10 16 5 C -0.57 -33.90 8.27 25.60 0.21 -33.69 16 6 H 0.08 4.53 6.19 -2.91 -0.02 4.51 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 9 Si 0.95 47.24 29.54 68.60 2.03 49.26 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 13 S 2.39 95.34 3.55 -56.49 -0.20 95.14 16 14 O -1.00 -47.03 17.91 -127.37 -2.28 -49.31 16 15 O -0.98 -47.01 15.81 -127.37 -2.01 -49.02 16 16 C -0.54 -13.17 2.02 30.59 0.06 -13.11 16 17 C -0.12 -2.44 4.97 30.60 0.15 -2.28 16 18 C -0.11 -1.51 5.92 30.60 0.18 -1.33 16 19 C -0.13 -1.77 5.92 30.59 0.18 -1.59 16 20 C -0.11 -1.63 5.92 30.58 0.18 -1.45 16 21 C -0.12 -2.76 5.21 30.58 0.16 -2.60 16 22 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 23 H 0.11 1.88 6.71 -2.39 -0.02 1.87 16 24 H 0.06 1.81 8.03 -2.39 -0.02 1.80 16 25 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.00 -0.14 8.10 -2.39 -0.02 -0.16 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.17 2.90 6.84 -2.39 -0.02 2.88 16 29 H 0.07 1.66 8.03 -2.39 -0.02 1.64 16 30 H 0.09 1.64 6.73 -2.39 -0.02 1.62 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -80.36 308.02 1.25 -79.11 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.01 Total: 10.03 kcal Atomic # 6 Polarization: -79.83 SS G_CDS: 2.42 Total: -77.41 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.28 Total: -57.81 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -4.29 Total: -98.33 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Atomic # 16 Polarization: 95.34 SS G_CDS: -0.20 Total: 95.14 kcal Total: -80.36 1.25 -79.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.491 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds