Wall clock time and date at job start Mon Mar 30 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.55323 * 2 1 4 4 C 1.53002 * 117.49961 * 214.28676 * 2 1 3 5 5 C 1.53005 * 117.49654 * 145.66400 * 2 1 3 6 6 C 1.52995 * 117.49934 * 215.00335 * 5 2 1 7 7 C 1.50705 * 109.47372 * 180.08821 * 6 5 2 8 8 C 1.38630 * 119.74729 * 269.72891 * 7 6 5 9 9 C 1.37626 * 120.24573 * 179.75954 * 8 7 6 10 10 C 1.40718 * 119.74418 * 0.53168 * 9 8 7 11 11 C 1.41389 * 120.24651 * 179.74408 * 10 9 8 12 12 H 1.08001 * 120.00277 * 150.21383 * 11 10 9 13 13 C 1.39944 * 119.99904 * 330.22246 * 11 10 9 14 14 N 1.30819 * 120.00165 * 161.72553 * 13 11 10 15 15 Si 1.86805 * 119.99862 * 341.71786 * 13 11 10 16 16 H 1.48503 * 109.46727 * 95.41572 * 15 13 11 17 17 H 1.48505 * 109.47071 * 215.41295 * 15 13 11 18 18 H 1.48493 * 109.47198 * 335.41957 * 15 13 11 19 19 C 1.40716 * 119.51101 * 359.72151 * 10 9 8 20 20 C 1.37620 * 119.74258 * 0.02562 * 19 10 9 21 21 C 1.50705 * 117.49755 * 0.02562 * 5 2 1 22 22 O 1.20821 * 119.99779 * 359.97438 * 21 5 2 23 23 O 1.34228 * 119.99376 * 179.72288 * 21 5 2 24 24 H 1.09002 * 109.47289 * 274.33527 * 1 2 3 25 25 H 1.08999 * 109.47205 * 34.33148 * 1 2 3 26 26 H 1.08996 * 109.47385 * 154.33423 * 1 2 3 27 27 H 1.08994 * 117.49882 * 145.02226 * 4 2 1 28 28 H 1.09001 * 117.49723 * 359.97438 * 4 2 1 29 29 H 1.09005 * 109.47622 * 300.08999 * 6 5 2 30 30 H 1.08998 * 109.47222 * 60.09044 * 6 5 2 31 31 H 1.07999 * 119.87916 * 359.97438 * 8 7 6 32 32 H 1.07994 * 120.12642 * 180.27743 * 9 8 7 33 33 H 0.97008 * 120.00029 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.13086 * 179.97438 * 19 10 9 35 35 H 1.08009 * 119.87281 * 179.97438 * 20 19 10 36 36 H 0.96707 * 116.99547 * 180.27537 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 3.5486 -0.7753 1.4723 7 6 4.0858 -2.0026 2.1624 8 6 3.7232 -2.2687 3.4737 9 6 4.2038 -3.3892 4.1121 10 6 5.0752 -4.2602 3.4324 11 6 5.5796 -5.4115 4.0798 12 1 5.8213 -6.2927 3.5040 13 6 5.7655 -5.4093 5.4669 14 7 5.8816 -6.5408 6.1131 15 14 5.8479 -3.7906 6.3956 16 1 4.5056 -3.4635 6.9401 17 1 6.8195 -3.9096 7.5123 18 1 6.2840 -2.7121 5.4727 19 6 5.4406 -3.9773 2.1033 20 6 4.9437 -2.8538 1.4830 21 6 1.3718 -2.1404 1.4613 22 8 0.1682 -2.0533 1.4018 23 8 1.9391 -3.1481 2.1428 24 1 -0.3634 0.0777 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3634 -0.9262 -0.4451 27 1 3.1715 -0.8757 -1.2679 28 1 1.6112 -1.8593 -1.2671 29 1 4.2746 -0.4236 0.7392 30 1 3.3690 0.0069 2.2099 31 1 3.0583 -1.5961 3.9951 32 1 3.9165 -3.5970 5.1322 33 1 6.0108 -6.5393 7.0745 34 1 6.1091 -4.6387 1.5723 35 1 5.2231 -2.6343 0.4630 36 1 1.3437 -3.7797 2.5691 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703324946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:26 Heat of formation + Delta-G solvation = -49.772598 kcal Electronic energy + Delta-G solvation = -19560.547626 eV Core-core repulsion = 16589.045991 eV Total energy + Delta-G solvation = -2971.501635 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45725 -37.88423 -37.33997 -35.46642 -33.70642 -31.70223 -29.63247 -29.05293 -27.13828 -24.57937 -23.51861 -21.47220 -21.22690 -20.01936 -19.41966 -17.54313 -17.35674 -15.93354 -15.40155 -15.26399 -14.65029 -14.26699 -13.88808 -13.76471 -13.42713 -13.09746 -12.86229 -12.43354 -12.28200 -12.25023 -12.00238 -11.62256 -11.43649 -11.39948 -11.00101 -10.74584 -10.49883 -10.26138 -10.11838 -9.89907 -9.80527 -9.59557 -9.41085 -9.05070 -7.55458 -7.36772 -6.90086 -4.41549 2.45113 2.65459 2.78139 3.13348 3.24408 3.34351 3.41560 3.80270 4.01634 4.44864 4.65452 4.78847 5.01903 5.31023 5.40650 5.52360 5.71053 5.80145 5.82551 5.91644 5.94269 6.03339 6.06531 6.17500 6.21370 6.25045 6.44149 6.63563 6.90084 6.97457 6.99625 7.25944 7.51456 7.65465 7.87217 7.95836 8.21274 8.40392 8.42473 8.74196 8.87278 10.12997 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.035831 B = 0.005714 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.269263 B = 4898.967756 C = 5006.124363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 H 0.113 0.887 4 C -0.145 4.145 5 C -0.124 4.124 6 C -0.019 4.019 7 C -0.197 4.197 8 C -0.038 4.038 9 C -0.239 4.239 10 C 0.098 3.902 11 C -0.453 4.453 12 H 0.087 0.913 13 C 0.085 3.915 14 N -0.814 5.814 15 Si 0.912 3.088 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.245 1.245 19 C -0.210 4.210 20 C -0.069 4.069 21 C 0.515 3.485 22 O -0.535 6.535 23 O -0.463 6.463 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.283 0.717 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 10.679 -8.131 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.143 4.143 3 H 0.131 0.869 4 C -0.182 4.182 5 C -0.125 4.125 6 C -0.057 4.057 7 C -0.198 4.198 8 C -0.057 4.057 9 C -0.258 4.258 10 C 0.095 3.905 11 C -0.481 4.481 12 H 0.105 0.895 13 C -0.133 4.133 14 N -0.439 5.439 15 Si 0.739 3.261 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.168 1.168 19 C -0.230 4.230 20 C -0.087 4.087 21 C 0.359 3.641 22 O -0.426 6.426 23 O -0.271 6.271 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.624 10.767 -8.116 14.610 hybrid contribution -0.339 -0.021 0.890 0.953 sum -5.963 10.746 -7.226 14.257 Atomic orbital electron populations 1.21387 0.91747 1.01293 1.02452 1.22574 0.96218 0.93912 1.01627 0.86881 1.23256 1.02970 1.01199 0.90798 1.21442 0.98385 0.98090 0.94631 1.19852 0.91265 0.96588 0.97951 1.18742 1.06891 0.98885 0.95315 1.20210 0.96384 0.95532 0.93545 1.20901 1.05449 0.99558 0.99883 1.17672 0.89430 0.91285 0.92071 1.19487 1.37579 0.99142 0.91936 0.89464 1.26127 0.91330 0.97995 0.97877 1.69707 1.35722 1.28175 1.10304 0.86314 0.78026 0.83178 0.78594 1.19895 1.22120 1.16810 1.20932 1.05754 0.99176 0.97094 1.20367 0.96631 0.94823 0.96864 1.22180 0.86021 0.80705 0.75206 1.90651 1.16498 1.75296 1.60201 1.85335 1.42869 1.36791 1.62110 0.91525 0.93257 0.91943 0.87532 0.88510 0.91351 0.91838 0.89940 0.88716 0.90646 0.88677 0.89414 0.75094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.43 37.16 0.31 -1.04 16 2 C -0.13 -1.47 6.13 -90.62 -0.56 -2.03 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.15 -1.72 9.53 -26.73 -0.25 -1.97 16 5 C -0.12 -1.77 2.42 -155.65 -0.38 -2.15 16 6 C -0.02 -0.29 5.52 -27.88 -0.15 -0.44 16 7 C -0.20 -3.72 3.44 -104.33 -0.36 -4.07 16 8 C -0.04 -0.78 6.89 -39.66 -0.27 -1.06 16 9 C -0.24 -5.54 7.11 -38.87 -0.28 -5.82 16 10 C 0.10 2.43 5.10 -106.83 -0.55 1.89 16 11 C -0.45 -12.18 9.57 -37.75 -0.36 -12.54 16 12 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 14 N -0.81 -21.85 13.93 55.55 0.77 -21.08 16 15 Si 0.91 20.91 24.52 -169.99 -4.17 16.74 16 16 H -0.27 -6.09 6.71 56.52 0.38 -5.71 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.24 -5.73 6.86 56.52 0.39 -5.34 16 19 C -0.21 -4.77 9.80 -38.87 -0.38 -5.15 16 20 C -0.07 -1.36 9.67 -39.66 -0.38 -1.75 16 21 C 0.51 8.43 7.69 36.01 0.28 8.71 16 22 O -0.53 -9.38 13.87 -18.75 -0.26 -9.64 16 23 O -0.46 -7.86 8.38 -39.25 -0.33 -8.19 16 24 H 0.07 0.90 7.26 -51.93 -0.38 0.53 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 27 H 0.11 1.08 8.05 -51.93 -0.42 0.66 16 28 H 0.10 1.15 8.05 -51.93 -0.42 0.74 16 29 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 30 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.08 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.10 2.24 4.73 -52.49 -0.25 2.00 16 33 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.09 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.39 5.49 9.10 45.56 0.41 5.90 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -28.75 295.01 -6.91 -35.65 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.95 Total: 7.36 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.42 Total: -25.29 kcal Atomic # 7 Polarization: -21.85 SS G_CDS: 0.77 Total: -21.08 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.59 Total: -17.84 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.75 -6.91 -35.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703324946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.122 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds