Wall clock time and date at job start Mon Mar 30 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.55323 * 2 1 4 4 C 1.53002 * 117.49961 * 214.28676 * 2 1 3 5 5 C 1.53005 * 117.49654 * 145.66400 * 2 1 3 6 6 C 1.52995 * 117.49934 * 215.00335 * 5 2 1 7 7 C 1.50705 * 109.47372 * 180.08821 * 6 5 2 8 8 C 1.38630 * 119.74729 * 269.72891 * 7 6 5 9 9 C 1.37626 * 120.24573 * 179.75954 * 8 7 6 10 10 C 1.40718 * 119.74418 * 0.53168 * 9 8 7 11 11 C 1.41389 * 120.24651 * 179.74408 * 10 9 8 12 12 H 1.08001 * 120.00277 * 150.21383 * 11 10 9 13 13 C 1.39944 * 119.99904 * 330.22246 * 11 10 9 14 14 N 1.30819 * 120.00165 * 161.72553 * 13 11 10 15 15 Si 1.86805 * 119.99862 * 341.71786 * 13 11 10 16 16 H 1.48503 * 109.46727 * 95.41572 * 15 13 11 17 17 H 1.48505 * 109.47071 * 215.41295 * 15 13 11 18 18 H 1.48493 * 109.47198 * 335.41957 * 15 13 11 19 19 C 1.40716 * 119.51101 * 359.72151 * 10 9 8 20 20 C 1.37620 * 119.74258 * 0.02562 * 19 10 9 21 21 C 1.50705 * 117.49755 * 0.02562 * 5 2 1 22 22 O 1.20821 * 119.99779 * 359.97438 * 21 5 2 23 23 O 1.34228 * 119.99376 * 179.72288 * 21 5 2 24 24 H 1.09002 * 109.47289 * 274.33527 * 1 2 3 25 25 H 1.08999 * 109.47205 * 34.33148 * 1 2 3 26 26 H 1.08996 * 109.47385 * 154.33423 * 1 2 3 27 27 H 1.08994 * 117.49882 * 145.02226 * 4 2 1 28 28 H 1.09001 * 117.49723 * 359.97438 * 4 2 1 29 29 H 1.09005 * 109.47622 * 300.08999 * 6 5 2 30 30 H 1.08998 * 109.47222 * 60.09044 * 6 5 2 31 31 H 1.07999 * 119.87916 * 359.97438 * 8 7 6 32 32 H 1.07994 * 120.12642 * 180.27743 * 9 8 7 33 33 H 0.97008 * 120.00029 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.13086 * 179.97438 * 19 10 9 35 35 H 1.08009 * 119.87281 * 179.97438 * 20 19 10 36 36 H 0.96707 * 116.99547 * 180.27537 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 3.5486 -0.7753 1.4723 7 6 4.0858 -2.0026 2.1624 8 6 3.7232 -2.2687 3.4737 9 6 4.2038 -3.3892 4.1121 10 6 5.0752 -4.2602 3.4324 11 6 5.5796 -5.4115 4.0798 12 1 5.8213 -6.2927 3.5040 13 6 5.7655 -5.4093 5.4669 14 7 5.8816 -6.5408 6.1131 15 14 5.8479 -3.7906 6.3956 16 1 4.5056 -3.4635 6.9401 17 1 6.8195 -3.9096 7.5123 18 1 6.2840 -2.7121 5.4727 19 6 5.4406 -3.9773 2.1033 20 6 4.9437 -2.8538 1.4830 21 6 1.3718 -2.1404 1.4613 22 8 0.1682 -2.0533 1.4018 23 8 1.9391 -3.1481 2.1428 24 1 -0.3634 0.0777 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3634 -0.9262 -0.4451 27 1 3.1715 -0.8757 -1.2679 28 1 1.6112 -1.8593 -1.2671 29 1 4.2746 -0.4236 0.7392 30 1 3.3690 0.0069 2.2099 31 1 3.0583 -1.5961 3.9951 32 1 3.9165 -3.5970 5.1322 33 1 6.0108 -6.5393 7.0745 34 1 6.1091 -4.6387 1.5723 35 1 5.2231 -2.6343 0.4630 36 1 1.3437 -3.7797 2.5691 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703324946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:26 Heat of formation + Delta-G solvation = -66.395334 kcal Electronic energy + Delta-G solvation = -19561.268442 eV Core-core repulsion = 16589.045991 eV Total energy + Delta-G solvation = -2972.222451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67114 -39.52229 -38.49522 -36.82919 -35.50711 -33.29026 -31.35464 -30.36841 -28.43038 -25.93879 -25.01042 -23.19523 -22.37692 -21.48500 -20.62473 -19.26469 -18.82521 -17.51539 -16.74145 -16.61352 -15.90292 -15.70868 -15.48249 -15.44629 -14.68405 -14.59166 -14.20156 -13.98418 -13.73556 -13.49581 -13.24339 -13.12409 -12.93906 -12.53822 -12.46513 -12.26421 -12.19308 -11.86715 -11.62287 -11.36576 -11.23046 -10.99158 -10.81919 -10.62347 -9.26618 -9.11282 -8.83600 -6.39656 0.90656 1.02353 1.26488 1.28362 1.44010 1.50803 2.15091 2.28918 2.66262 2.80871 3.50940 3.68749 3.84251 4.03831 4.30658 4.38323 4.45275 4.49506 4.60603 4.78132 4.85401 4.85891 4.89160 4.99428 5.02878 5.12620 5.17892 5.19223 5.22328 5.45544 5.49948 5.75613 5.79943 5.91724 6.02865 6.21272 6.38615 6.55561 6.86715 6.96535 7.16425 8.25995 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.035831 B = 0.005714 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.269263 B = 4898.967756 C = 5006.124363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 H 0.144 0.856 4 C -0.134 4.134 5 C -0.148 4.148 6 C -0.017 4.017 7 C -0.166 4.166 8 C -0.043 4.043 9 C -0.244 4.244 10 C 0.075 3.925 11 C -0.492 4.492 12 H 0.048 0.952 13 C 0.047 3.953 14 N -0.862 5.862 15 Si 0.967 3.033 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.251 1.251 19 C -0.223 4.223 20 C -0.068 4.068 21 C 0.509 3.491 22 O -0.553 6.553 23 O -0.482 6.482 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.290 0.710 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 14.679 -10.004 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 H 0.161 0.839 4 C -0.171 4.171 5 C -0.149 4.149 6 C -0.054 4.054 7 C -0.167 4.167 8 C -0.061 4.061 9 C -0.263 4.263 10 C 0.073 3.927 11 C -0.522 4.522 12 H 0.067 0.933 13 C -0.166 4.166 14 N -0.489 5.489 15 Si 0.791 3.209 16 H -0.189 1.189 17 H -0.210 1.210 18 H -0.174 1.174 19 C -0.243 4.243 20 C -0.086 4.086 21 C 0.355 3.645 22 O -0.446 6.446 23 O -0.292 6.292 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.152 0.848 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.225 14.768 -9.998 18.889 hybrid contribution -0.319 -1.125 1.216 1.687 sum -6.544 13.643 -8.782 17.495 Atomic orbital electron populations 1.21359 0.92439 1.01517 1.01560 1.22738 0.95708 0.94690 0.99452 0.83880 1.23430 1.04057 1.00785 0.88792 1.21406 0.98287 0.99293 0.95947 1.19924 0.92079 0.94528 0.98851 1.19281 1.03747 0.99250 0.94398 1.20468 0.96304 0.94890 0.94465 1.20934 1.05359 1.00298 0.99690 1.17759 0.90404 0.91333 0.93243 1.19465 1.40849 0.99291 0.92627 0.93345 1.26767 0.90927 1.00686 0.98230 1.69748 1.38586 1.29703 1.10910 0.85476 0.78531 0.79384 0.77526 1.18885 1.20956 1.17436 1.21113 1.06149 1.00438 0.96554 1.20726 0.95985 0.93462 0.98415 1.22746 0.86254 0.80698 0.74839 1.90650 1.17423 1.75698 1.60789 1.85263 1.43906 1.37470 1.62536 0.93351 0.90687 0.93719 0.84843 0.89081 0.88306 0.90499 0.87866 0.89654 0.90016 0.89072 0.85842 0.74075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 8.43 71.98 0.61 -1.72 16 2 C -0.11 -1.98 6.13 -10.79 -0.07 -2.05 16 3 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.13 -2.48 9.53 30.60 0.29 -2.19 16 5 C -0.15 -3.55 2.42 -52.92 -0.13 -3.67 16 6 C -0.02 -0.41 5.52 29.85 0.16 -0.24 16 7 C -0.17 -5.60 3.44 -19.68 -0.07 -5.67 16 8 C -0.04 -1.65 6.89 22.22 0.15 -1.50 16 9 C -0.24 -11.20 7.11 22.73 0.16 -11.04 16 10 C 0.07 3.78 5.10 -21.29 -0.11 3.67 16 11 C -0.49 -28.15 9.57 23.46 0.22 -27.93 16 12 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 13 C 0.05 2.56 5.40 85.26 0.46 3.02 16 14 N -0.86 -48.83 13.93 21.83 0.30 -48.52 16 15 Si 0.97 43.93 24.52 68.60 1.68 45.61 16 16 H -0.26 -11.39 6.71 99.48 0.67 -10.72 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.25 -11.46 6.86 99.48 0.68 -10.78 16 19 C -0.22 -10.06 9.80 22.73 0.22 -9.84 16 20 C -0.07 -2.48 9.67 22.22 0.21 -2.27 16 21 C 0.51 15.46 7.69 71.24 0.55 16.01 16 22 O -0.55 -18.57 13.87 21.98 0.30 -18.27 16 23 O -0.48 -15.65 8.38 -51.39 -0.43 -16.08 16 24 H 0.05 1.19 7.26 -2.39 -0.02 1.17 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.08 7.02 -2.39 -0.02 1.06 16 27 H 0.13 1.81 8.05 -2.39 -0.02 1.79 16 28 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 29 H 0.10 1.89 7.84 -2.38 -0.02 1.87 16 30 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.10 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.09 4.05 4.73 -2.91 -0.01 4.03 16 33 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 34 H 0.09 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.40 11.13 9.10 -74.05 -0.67 10.45 16 Total: -1.00 -65.40 295.01 4.89 -60.50 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.36 Total: 22.17 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 2.68 Total: -45.42 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.30 Total: -48.52 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.13 Total: -34.35 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.68 Total: 45.61 kcal Total: -65.40 4.89 -60.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703324946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.891 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds