Wall clock time and date at job start Mon Mar 30 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46980 * 274.99985 * 3 2 1 5 5 H 1.48503 * 109.47136 * 34.99908 * 3 2 1 6 6 H 1.48499 * 109.47595 * 155.00275 * 3 2 1 7 7 C 1.37880 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00017 * 355.32207 * 7 2 1 9 9 C 1.50698 * 119.99675 * 175.59491 * 7 2 1 10 10 C 1.52996 * 115.55272 * 95.17786 * 9 7 2 11 11 O 1.42906 * 109.46978 * 305.29213 * 10 9 7 12 12 C 1.42896 * 114.00109 * 184.97058 * 11 10 9 13 13 C 1.53002 * 109.47137 * 274.66020 * 12 11 10 14 14 C 1.52993 * 109.47265 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47174 * 60.00221 * 14 13 12 16 16 F 1.39900 * 109.47552 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.46906 * 60.00099 * 15 14 13 18 18 C 1.52999 * 109.47137 * 300.00249 * 15 14 13 19 19 C 1.52993 * 109.47416 * 59.99449 * 18 15 14 20 20 C 1.52998 * 117.49920 * 309.50080 * 9 7 2 21 21 C 1.53008 * 117.49614 * 240.84193 * 9 7 2 22 22 H 0.96996 * 120.00518 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47408 * 65.28862 * 10 9 7 24 24 H 1.09000 * 109.47309 * 185.29045 * 10 9 7 25 25 H 1.09005 * 109.47445 * 34.65967 * 12 11 10 26 26 H 1.08996 * 109.47425 * 300.00500 * 13 12 11 27 27 H 1.09011 * 109.47011 * 59.99961 * 13 12 11 28 28 H 1.09005 * 109.47444 * 300.00025 * 14 13 12 29 29 H 1.09001 * 109.47140 * 180.02562 * 14 13 12 30 30 H 1.09005 * 109.46591 * 299.99650 * 18 15 14 31 31 H 1.09000 * 109.47167 * 180.02562 * 18 15 14 32 32 H 1.09001 * 109.47264 * 180.02562 * 19 18 15 33 33 H 1.09005 * 109.46812 * 60.00017 * 19 18 15 34 34 H 1.09000 * 117.50136 * 0.02562 * 20 9 7 35 35 H 1.09006 * 117.49736 * 145.02256 * 20 9 7 36 36 H 1.08998 * 117.49806 * 214.97843 * 21 9 7 37 37 H 1.08996 * 117.50010 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3909 2.1073 -1.3948 5 1 1.5033 2.6198 0.8030 6 1 3.5955 1.4120 0.5916 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1277 0.0772 9 6 3.5082 -1.1959 -0.0997 10 6 4.2582 -1.2678 1.2318 11 8 3.8184 -0.2084 2.0841 12 6 4.5381 -0.1159 3.3151 13 6 3.9162 -1.0646 4.3419 14 6 4.6871 -0.9661 5.6598 15 6 4.6185 0.4694 6.1847 16 9 5.3229 0.5594 7.3900 17 9 3.2822 0.8244 6.3984 18 6 5.2403 1.4181 5.1579 19 6 4.4695 1.3196 3.8400 20 6 4.1422 -0.3749 -1.2243 21 6 4.1351 -1.9036 -1.3027 22 1 -0.4851 0.8400 -0.0004 23 1 4.0576 -2.2263 1.7107 24 1 5.3287 -1.1687 1.0517 25 1 5.5794 -0.3923 3.1490 26 1 2.8750 -0.7883 4.5080 27 1 3.9655 -2.0874 3.9681 28 1 5.7282 -1.2428 5.4933 29 1 4.2443 -1.6423 6.3911 30 1 6.2814 1.1414 4.9915 31 1 5.1918 2.4407 5.5321 32 1 4.9128 1.9951 3.1085 33 1 3.4283 1.5961 4.0065 34 1 3.4718 0.1670 -1.8914 35 1 5.0940 0.1138 -1.0156 36 1 5.0821 -2.4200 -1.1456 37 1 3.4600 -2.3682 -2.0214 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703528681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:24 Heat of formation + Delta-G solvation = -151.676434 kcal Electronic energy + Delta-G solvation = -20646.868885 eV Core-core repulsion = 17252.551933 eV Total energy + Delta-G solvation = -3394.316952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98083 -47.97954 -40.00069 -38.46277 -36.27499 -34.14559 -32.18737 -30.08757 -28.08296 -26.87507 -24.14630 -23.42153 -23.12581 -21.21561 -20.73103 -18.43599 -18.38404 -17.82283 -17.56932 -17.24215 -16.67756 -16.06254 -15.90715 -15.18917 -14.79017 -14.75025 -14.61690 -14.37547 -14.23384 -14.10627 -13.47307 -13.38309 -13.28488 -13.04886 -12.83850 -12.70337 -12.34116 -12.16085 -12.04640 -11.84227 -11.57839 -11.33830 -11.22344 -10.86979 -10.59177 -10.42343 -9.89996 -8.23118 -6.29439 1.37831 1.47681 1.72415 2.51549 2.73014 2.78626 3.11421 3.16423 3.32074 3.39126 3.59326 3.90538 3.93758 4.11981 4.22404 4.25114 4.30606 4.36537 4.50197 4.56473 4.59302 4.72575 4.77456 4.82795 4.87307 4.89298 4.98629 4.99346 5.10803 5.22880 5.26122 5.43055 5.50901 5.77726 6.30892 6.61840 6.83121 7.43677 8.92019 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026762 B = 0.006410 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.005059 B = 4366.858504 C = 4697.748774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.292 1.292 5 H -0.318 1.318 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.025 0.975 9 C -0.032 4.032 10 C 0.109 3.891 11 O -0.383 6.383 12 C 0.075 3.925 13 C -0.141 4.141 14 C -0.145 4.145 15 C 0.276 3.724 16 F -0.207 7.207 17 F -0.218 7.218 18 C -0.143 4.143 19 C -0.119 4.119 20 C -0.196 4.196 21 C -0.156 4.156 22 H 0.260 0.740 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.413 0.808 10.296 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.220 1.220 5 H -0.246 1.246 6 H -0.114 1.114 7 C -0.518 4.518 8 H 0.044 0.956 9 C -0.033 4.033 10 C 0.033 3.967 11 O -0.302 6.302 12 C 0.017 3.983 13 C -0.179 4.179 14 C -0.183 4.183 15 C 0.240 3.760 16 F -0.188 7.188 17 F -0.199 7.199 18 C -0.180 4.180 19 C -0.156 4.156 20 C -0.233 4.233 21 C -0.193 4.193 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.116 1.026 10.295 20.000 hybrid contribution -0.972 0.582 0.101 1.138 sum 16.144 1.608 10.396 19.269 Atomic orbital electron populations 1.70073 1.08724 1.27659 1.53489 1.25797 0.94978 1.03124 0.93208 0.85908 0.82972 0.77703 0.76536 1.21962 1.24649 1.11361 1.20371 0.89714 0.92253 1.49426 0.95640 1.19389 0.92895 1.03060 0.87927 1.22051 0.95642 0.89383 0.89640 1.88205 1.60772 1.52292 1.28944 1.22315 0.96332 0.95007 0.84630 1.21988 0.99814 1.01535 0.94604 1.22453 1.05184 0.92773 0.97842 1.21529 0.73998 0.98838 0.81610 1.92983 1.78766 1.97509 1.49591 1.92978 1.37723 1.93689 1.95539 1.22455 1.02313 1.00524 0.92730 1.21523 1.00949 0.96638 0.96519 1.22987 1.01878 0.94507 1.03961 1.22934 1.01927 0.93675 1.00777 0.93180 0.93928 0.91884 0.89185 0.93265 0.89889 0.85733 0.88958 0.85540 0.88306 0.89173 0.93080 0.91843 0.87478 0.86680 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.88 13.96 21.45 0.30 -62.58 16 2 C 0.03 1.53 5.47 84.66 0.46 1.99 16 3 Si 0.94 47.11 23.62 68.60 1.62 48.73 16 4 H -0.29 -14.31 7.08 99.48 0.70 -13.60 16 5 H -0.32 -16.54 7.11 99.48 0.71 -15.84 16 6 H -0.19 -8.43 5.12 99.48 0.51 -7.92 16 7 C -0.48 -27.74 9.21 25.60 0.24 -27.51 16 8 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 9 C -0.03 -1.40 1.37 -52.93 -0.07 -1.48 16 10 C 0.11 3.95 5.64 71.98 0.41 4.35 16 11 O -0.38 -14.78 6.74 -148.98 -1.00 -15.78 16 12 C 0.07 2.06 2.60 30.59 0.08 2.14 16 13 C -0.14 -3.76 5.34 30.59 0.16 -3.60 16 14 C -0.14 -2.84 5.45 30.59 0.17 -2.68 16 15 C 0.28 6.24 2.10 30.59 0.06 6.30 16 16 F -0.21 -4.74 17.06 44.97 0.77 -3.97 16 17 F -0.22 -6.48 16.02 44.97 0.72 -5.76 16 18 C -0.14 -2.68 5.45 30.59 0.17 -2.51 16 19 C -0.12 -3.05 5.45 30.59 0.17 -2.89 16 20 C -0.20 -7.69 7.25 30.62 0.22 -7.47 16 21 C -0.16 -5.70 9.96 30.62 0.30 -5.40 16 22 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 23 H 0.04 1.50 7.64 -2.38 -0.02 1.48 16 24 H 0.06 1.79 7.92 -2.39 -0.02 1.77 16 25 H 0.09 1.86 7.78 -2.38 -0.02 1.84 16 26 H 0.05 1.64 7.80 -2.39 -0.02 1.62 16 27 H 0.08 2.13 7.63 -2.38 -0.02 2.11 16 28 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.62 7.80 -2.38 -0.02 1.61 16 34 H 0.06 2.78 6.55 -2.39 -0.02 2.77 16 35 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 36 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -72.48 296.62 5.61 -66.86 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.84 Total: 11.24 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 2.37 Total: -38.73 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.30 Total: -62.58 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.00 Total: -15.78 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 1.49 Total: -9.74 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.62 Total: 48.73 kcal Total: -72.48 5.61 -66.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703528681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.813 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds