Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47023 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00570 * 2 1 3 5 5 H 1.07993 * 120.00569 * 119.99922 * 4 2 1 6 6 C 1.37883 * 119.99493 * 299.99850 * 4 2 1 7 7 N 1.31511 * 120.00205 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99724 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47179 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47462 * 120.00156 * 8 6 4 11 11 H 1.48503 * 109.46873 * 240.00236 * 8 6 4 12 12 C 1.50701 * 109.47215 * 240.00319 * 2 1 3 13 13 O 1.21254 * 119.99648 * 270.00318 * 12 2 1 14 14 C 1.47173 * 120.00100 * 89.99608 * 12 2 1 15 15 C 1.39881 * 120.14727 * 359.97438 * 14 12 2 16 16 C 1.37887 * 119.93953 * 180.02562 * 15 14 12 17 17 C 1.38333 * 120.23624 * 359.74007 * 16 15 14 18 18 C 1.38847 * 120.29423 * 0.51422 * 17 16 15 19 19 O 1.35909 * 119.97510 * 179.76582 * 18 17 16 20 20 C 1.42897 * 116.99691 * 6.40485 * 19 18 17 21 21 C 1.53001 * 117.50024 * 226.26251 * 20 19 18 22 22 C 1.53002 * 117.49828 * 157.60143 * 20 19 18 23 23 C 1.38427 * 120.05556 * 359.48723 * 18 17 16 24 24 H 1.09000 * 109.47218 * 299.99646 * 1 2 3 25 25 H 1.08997 * 109.47057 * 59.99930 * 1 2 3 26 26 H 1.09003 * 109.46861 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99939 * 180.02562 * 7 6 4 28 28 H 1.07998 * 120.02701 * 0.03797 * 15 14 12 29 29 H 1.08000 * 119.88006 * 180.02562 * 16 15 14 30 30 H 1.08003 * 119.85451 * 180.28464 * 17 16 15 31 31 H 1.09003 * 115.55182 * 11.93517 * 20 19 18 32 32 H 1.08997 * 117.49695 * 359.97438 * 21 20 19 33 33 H 1.08995 * 117.49897 * 145.02597 * 21 20 19 34 34 H 1.09004 * 117.50234 * 214.97972 * 22 20 19 35 35 H 1.08995 * 117.50076 * 0.02562 * 22 20 19 36 36 H 1.08002 * 120.11789 * 180.23182 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1472 -0.1861 4.8161 11 1 1.1677 -1.5869 4.8164 12 6 2.0324 -0.7103 -1.2305 13 8 2.2344 -1.9056 -1.2005 14 6 2.2776 0.0466 -2.4686 15 6 2.0449 1.4254 -2.5068 16 6 2.2756 2.1303 -3.6692 17 6 2.7418 1.4797 -4.7975 18 6 2.9711 0.1105 -4.7720 19 8 3.4247 -0.5228 -5.8857 20 6 3.7774 0.2984 -7.0007 21 6 3.2669 -0.1250 -8.3795 22 6 4.7483 -0.2855 -8.0290 23 6 2.7436 -0.6090 -3.6116 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1611 3.4845 28 1 1.6851 1.9373 -1.6266 29 1 2.0960 3.1949 -3.6975 30 1 2.9248 2.0387 -5.7034 31 1 3.8446 1.3667 -6.7952 32 1 2.6623 -1.0302 -8.4361 33 1 2.9985 0.6647 -9.0811 34 1 5.4539 0.3987 -8.5003 35 1 5.1177 -1.2962 -7.8552 36 1 2.9252 -1.6735 -3.5896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704409104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -19.268352 kcal Electronic energy + Delta-G solvation = -18558.941864 eV Core-core repulsion = 15588.762993 eV Total energy + Delta-G solvation = -2970.178872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23460 -38.81618 -37.21730 -35.31153 -33.80478 -31.18362 -30.55279 -29.35519 -25.18968 -24.79945 -23.10839 -22.75199 -22.08272 -21.03239 -19.25001 -17.65058 -16.52083 -16.26357 -15.59096 -15.42027 -14.96412 -14.81235 -14.37743 -14.10908 -13.58338 -13.51560 -13.26638 -12.65539 -12.45404 -11.97769 -11.87037 -11.55717 -11.45461 -11.11654 -11.01444 -10.74997 -10.65396 -10.61968 -10.24684 -10.18856 -10.07275 -8.97550 -8.78522 -8.55711 -8.31413 -8.05597 -6.04915 -4.09567 1.04118 1.59144 2.90893 3.13232 3.30973 3.38680 3.46268 3.49529 4.17241 4.36206 4.42955 4.58114 4.71102 4.81314 4.90487 5.11097 5.21297 5.28025 5.28817 5.51951 5.52611 5.63633 5.67837 5.77435 6.09939 6.28704 6.42078 6.60739 6.67350 6.73221 6.88181 6.91335 7.00282 7.45156 7.50327 7.75965 7.99902 8.23575 8.62064 8.95177 9.55168 11.01959 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.042377 B = 0.004041 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.575644 B = 6927.820844 C = 7240.905062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.007 3.993 3 H 0.054 0.946 4 C -0.506 4.506 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.397 3.603 13 O -0.458 6.458 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.096 4.096 17 C -0.191 4.191 18 C 0.110 3.890 19 O -0.285 6.285 20 C 0.004 3.996 21 C -0.186 4.186 22 C -0.172 4.172 23 C -0.104 4.104 24 H 0.095 0.905 25 H 0.014 0.986 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 4.406 -18.335 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.071 0.929 4 C -0.544 4.544 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.275 3.725 13 O -0.333 6.333 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.210 4.210 18 C 0.066 3.934 19 O -0.198 6.198 20 C -0.053 4.053 21 C -0.224 4.224 22 C -0.209 4.209 23 C -0.122 4.122 24 H 0.113 0.887 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.552 3.665 -18.207 18.908 hybrid contribution 0.292 -0.094 0.665 0.733 sum 3.844 3.571 -17.541 18.309 Atomic orbital electron populations 1.21678 0.95832 1.00088 1.01107 1.19156 0.94496 0.97309 0.90257 0.92854 1.21115 1.31339 1.12528 0.89397 0.91514 1.24929 0.94990 0.95004 0.99059 1.69869 1.36842 1.22982 1.23494 0.86433 0.78698 0.79783 0.82576 1.19598 1.20974 1.20938 1.23442 0.72384 0.88448 0.88254 1.90366 1.40007 1.17535 1.85405 1.20980 0.99847 0.95022 0.95641 1.21638 0.98532 0.93259 0.98714 1.20920 0.98366 0.99913 0.92245 1.21324 1.06003 0.93525 1.00145 1.18791 0.96913 0.91267 0.86417 1.86029 1.78906 1.34278 1.20624 1.22999 1.04578 0.95128 0.82607 1.23476 0.97169 1.04383 0.97331 1.23359 0.93138 1.03631 1.00789 1.20705 1.00935 1.00977 0.89615 0.88673 0.96647 0.94855 0.92924 0.83935 0.85371 0.85436 0.85818 0.87831 0.87828 0.87601 0.87784 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.95 37.16 0.33 -2.73 16 2 C 0.01 0.16 2.07 -92.92 -0.19 -0.03 16 3 H 0.05 1.32 6.47 -51.93 -0.34 0.99 16 4 C -0.51 -14.25 8.32 -34.44 -0.29 -14.54 16 5 H 0.07 1.96 7.14 -52.49 -0.37 1.59 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 C 0.40 9.22 6.17 -30.68 -0.19 9.03 16 13 O -0.46 -11.75 15.95 5.58 0.09 -11.66 16 14 C -0.11 -2.19 5.87 -105.08 -0.62 -2.81 16 15 C -0.10 -1.71 9.36 -39.10 -0.37 -2.07 16 16 C -0.10 -1.30 10.02 -39.67 -0.40 -1.69 16 17 C -0.19 -2.50 9.10 -39.32 -0.36 -2.86 16 18 C 0.11 1.70 6.67 -39.29 -0.26 1.43 16 19 O -0.28 -4.06 10.39 -19.46 -0.20 -4.27 16 20 C 0.00 0.04 6.07 -26.73 -0.16 -0.13 16 21 C -0.19 -1.52 10.48 -26.69 -0.28 -1.80 16 22 C -0.17 -1.40 10.48 -26.69 -0.28 -1.68 16 23 C -0.10 -1.86 9.54 -38.94 -0.37 -2.23 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 28 H 0.14 2.35 6.35 -52.49 -0.33 2.01 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.26 5.68 -52.48 -0.30 0.96 16 31 H 0.12 1.05 5.58 -51.93 -0.29 0.76 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.14 2.52 7.65 -52.49 -0.40 2.12 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -30.79 307.07 -7.85 -38.64 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.44 Total: 0.81 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -3.52 Total: -20.51 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.63 Total: -24.22 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.79 -7.85 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704409104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.368 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds