Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47023 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00570 * 2 1 3 5 5 H 1.07993 * 120.00569 * 119.99922 * 4 2 1 6 6 C 1.37883 * 119.99493 * 299.99850 * 4 2 1 7 7 N 1.31511 * 120.00205 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99724 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47179 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47462 * 120.00156 * 8 6 4 11 11 H 1.48503 * 109.46873 * 240.00236 * 8 6 4 12 12 C 1.50701 * 109.47215 * 240.00319 * 2 1 3 13 13 O 1.21254 * 119.99648 * 270.00318 * 12 2 1 14 14 C 1.47173 * 120.00100 * 89.99608 * 12 2 1 15 15 C 1.39881 * 120.14727 * 359.97438 * 14 12 2 16 16 C 1.37887 * 119.93953 * 180.02562 * 15 14 12 17 17 C 1.38333 * 120.23624 * 359.74007 * 16 15 14 18 18 C 1.38847 * 120.29423 * 0.51422 * 17 16 15 19 19 O 1.35909 * 119.97510 * 179.76582 * 18 17 16 20 20 C 1.42897 * 116.99691 * 6.40485 * 19 18 17 21 21 C 1.53001 * 117.50024 * 226.26251 * 20 19 18 22 22 C 1.53002 * 117.49828 * 157.60143 * 20 19 18 23 23 C 1.38427 * 120.05556 * 359.48723 * 18 17 16 24 24 H 1.09000 * 109.47218 * 299.99646 * 1 2 3 25 25 H 1.08997 * 109.47057 * 59.99930 * 1 2 3 26 26 H 1.09003 * 109.46861 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99939 * 180.02562 * 7 6 4 28 28 H 1.07998 * 120.02701 * 0.03797 * 15 14 12 29 29 H 1.08000 * 119.88006 * 180.02562 * 16 15 14 30 30 H 1.08003 * 119.85451 * 180.28464 * 17 16 15 31 31 H 1.09003 * 115.55182 * 11.93517 * 20 19 18 32 32 H 1.08997 * 117.49695 * 359.97438 * 21 20 19 33 33 H 1.08995 * 117.49897 * 145.02597 * 21 20 19 34 34 H 1.09004 * 117.50234 * 214.97972 * 22 20 19 35 35 H 1.08995 * 117.50076 * 0.02562 * 22 20 19 36 36 H 1.08002 * 120.11789 * 180.23182 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1472 -0.1861 4.8161 11 1 1.1677 -1.5869 4.8164 12 6 2.0324 -0.7103 -1.2305 13 8 2.2344 -1.9056 -1.2005 14 6 2.2776 0.0466 -2.4686 15 6 2.0449 1.4254 -2.5068 16 6 2.2756 2.1303 -3.6692 17 6 2.7418 1.4797 -4.7975 18 6 2.9711 0.1105 -4.7720 19 8 3.4247 -0.5228 -5.8857 20 6 3.7774 0.2984 -7.0007 21 6 3.2669 -0.1250 -8.3795 22 6 4.7483 -0.2855 -8.0290 23 6 2.7436 -0.6090 -3.6116 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1611 3.4845 28 1 1.6851 1.9373 -1.6266 29 1 2.0960 3.1949 -3.6975 30 1 2.9248 2.0387 -5.7034 31 1 3.8446 1.3667 -6.7952 32 1 2.6623 -1.0302 -8.4361 33 1 2.9985 0.6647 -9.0811 34 1 5.4539 0.3987 -8.5003 35 1 5.1177 -1.2962 -7.8552 36 1 2.9252 -1.6735 -3.5896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704409104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -36.436161 kcal Electronic energy + Delta-G solvation = -18559.686316 eV Core-core repulsion = 15588.762993 eV Total energy + Delta-G solvation = -2970.923324 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41787 -40.31948 -38.45818 -36.21344 -35.82911 -32.91356 -32.02024 -30.71115 -27.28886 -26.22222 -24.41720 -23.40610 -23.26247 -22.40419 -20.53804 -19.05198 -18.45818 -17.45239 -17.07845 -16.65269 -16.47286 -16.10651 -15.71012 -15.35743 -15.21208 -14.81799 -14.63859 -14.43428 -13.67402 -13.53146 -13.08355 -13.01944 -12.74939 -12.65690 -12.60105 -12.45608 -12.27073 -12.15562 -12.03018 -11.39192 -11.05919 -11.01181 -10.58077 -10.23418 -10.05510 -9.20348 -8.16870 -6.28932 -0.32525 0.38803 1.38260 1.40335 1.52233 1.58557 1.98195 2.41184 2.72790 2.90632 3.11444 3.32097 3.67055 3.78876 3.94884 3.99836 4.13512 4.14174 4.25501 4.40276 4.62986 4.68555 4.72795 4.84362 4.90429 4.97068 4.98803 5.02778 5.18899 5.21651 5.35299 5.40723 5.49208 5.66728 5.71919 5.93237 6.20419 6.41830 6.73227 6.83185 7.38328 8.88611 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.042377 B = 0.004041 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.575644 B = 6927.820844 C = 7240.905062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.274 1.274 12 C 0.398 3.602 13 O -0.500 6.500 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.081 4.081 17 C -0.170 4.170 18 C 0.112 3.888 19 O -0.306 6.306 20 C -0.026 4.026 21 C -0.177 4.177 22 C -0.166 4.166 23 C -0.125 4.125 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.267 0.733 28 H 0.140 0.860 29 H 0.173 0.827 30 H 0.172 0.828 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 6.935 -20.443 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.017 4.017 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.200 1.200 12 C 0.278 3.722 13 O -0.379 6.379 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.098 4.098 17 C -0.188 4.188 18 C 0.067 3.933 19 O -0.220 6.220 20 C -0.082 4.082 21 C -0.214 4.214 22 C -0.203 4.203 23 C -0.144 4.144 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.190 0.810 30 H 0.189 0.811 31 H 0.164 0.836 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.898 6.215 -20.327 21.610 hybrid contribution 0.217 -0.837 1.163 1.450 sum 4.115 5.378 -19.164 20.325 Atomic orbital electron populations 1.21512 0.95082 0.99248 1.01725 1.19138 0.95183 0.97040 0.90314 0.92802 1.21273 1.32143 1.12501 0.91520 0.94060 1.25572 0.95036 0.95687 1.01321 1.69933 1.36798 1.23377 1.24401 0.85564 0.78406 0.78629 0.79429 1.20538 1.19528 1.19987 1.23528 0.71119 0.88014 0.89490 1.90332 1.42172 1.19107 1.86250 1.20540 1.03299 0.96072 0.94217 1.21709 0.98859 0.91988 1.00218 1.21359 0.96124 1.01732 0.90619 1.21801 1.03114 0.92392 1.01524 1.18784 0.96361 0.92142 0.85971 1.86005 1.78799 1.35983 1.21256 1.23500 1.06767 0.95946 0.81964 1.23578 0.96967 1.04652 0.96198 1.23491 0.93736 1.03584 0.99512 1.20565 1.02568 1.00333 0.90901 0.90380 0.93487 0.96325 0.92400 0.84218 0.80996 0.81110 0.83564 0.88996 0.85070 0.84926 0.88945 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.95 71.98 0.64 -5.07 16 2 C 0.00 0.11 2.07 -12.29 -0.03 0.08 16 3 H 0.05 2.74 6.47 -2.39 -0.02 2.73 16 4 C -0.54 -31.47 8.32 25.60 0.21 -31.26 16 5 H 0.04 2.57 7.14 -2.91 -0.02 2.55 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -50.74 11.32 21.45 0.24 -50.50 16 8 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 9 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.40 19.44 6.17 28.03 0.17 19.62 16 13 O -0.50 -27.52 15.95 -2.95 -0.05 -27.57 16 14 C -0.14 -5.53 5.87 -20.16 -0.12 -5.65 16 15 C -0.11 -3.48 9.36 22.58 0.21 -3.27 16 16 C -0.08 -1.85 10.02 22.21 0.22 -1.63 16 17 C -0.17 -3.75 9.10 22.44 0.20 -3.55 16 18 C 0.11 3.29 6.67 22.46 0.15 3.44 16 19 O -0.31 -8.37 10.39 -92.53 -0.96 -9.33 16 20 C -0.03 -0.45 6.07 30.60 0.19 -0.27 16 21 C -0.18 -2.33 10.48 30.62 0.32 -2.01 16 22 C -0.17 -2.23 10.48 30.62 0.32 -1.91 16 23 C -0.12 -4.61 9.54 22.68 0.22 -4.39 16 24 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.14 4.47 6.35 -2.91 -0.02 4.45 16 29 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.29 5.68 -2.91 -0.02 2.28 16 31 H 0.15 1.75 5.58 -2.39 -0.01 1.74 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 4.61 7.65 -2.91 -0.02 4.59 16 Total: -1.00 -70.23 307.07 5.52 -64.71 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.09 Total: 9.83 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 3.17 Total: -34.10 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.24 Total: -50.50 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.01 Total: -36.90 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.23 5.52 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704409104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.272 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds