Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38306 * 119.96246 * 2 1 4 4 C 1.38260 * 120.14327 * 179.76799 * 3 2 1 5 5 C 1.38139 * 120.06945 * 0.50981 * 4 3 2 6 6 C 1.38858 * 119.92582 * 359.74983 * 5 4 3 7 7 N 1.39907 * 120.06697 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99946 * 323.60737 * 7 6 5 9 9 O 1.21585 * 120.00241 * 2.74511 * 8 7 6 10 10 N 1.34780 * 119.99581 * 182.74253 * 8 7 6 11 11 C 1.37172 * 119.99833 * 183.33599 * 10 8 7 12 12 H 1.08003 * 119.99879 * 29.16987 * 11 10 8 13 13 C 1.38882 * 120.00310 * 209.17012 * 11 10 8 14 14 N 1.31474 * 119.99587 * 19.18787 * 13 11 10 15 15 Si 1.86798 * 120.00142 * 199.19281 * 13 11 10 16 16 H 1.48505 * 109.47160 * 60.00180 * 15 13 11 17 17 H 1.48502 * 109.46887 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47302 * 299.99829 * 15 13 11 19 19 C 1.46497 * 120.00252 * 3.34267 * 10 8 7 20 20 C 1.53006 * 117.49584 * 309.34025 * 19 10 8 21 21 C 1.53002 * 117.49499 * 240.68629 * 19 10 8 22 22 C 1.38084 * 119.96579 * 180.28221 * 2 1 3 23 23 H 1.09002 * 109.46731 * 269.71904 * 1 2 3 24 24 H 1.08999 * 109.47267 * 29.72220 * 1 2 3 25 25 H 1.09006 * 109.46810 * 149.72486 * 1 2 3 26 26 H 1.08003 * 119.92474 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.96732 * 180.22973 * 4 3 2 28 28 H 1.07994 * 120.03261 * 179.76392 * 5 4 3 29 29 H 0.97000 * 119.99336 * 143.60612 * 7 6 5 30 30 H 0.97007 * 119.99463 * 180.02562 * 14 13 11 31 31 H 1.08999 * 115.55337 * 95.01832 * 19 10 8 32 32 H 1.09000 * 117.49823 * 0.02562 * 20 19 10 33 33 H 1.09002 * 117.49436 * 145.02172 * 20 19 10 34 34 H 1.09007 * 117.49468 * 214.97752 * 21 19 10 35 35 H 1.09004 * 117.50083 * 359.97377 * 21 19 10 36 36 H 1.07997 * 120.03626 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0048 5 6 4.2763 0.0093 -0.0009 6 6 3.5858 -1.1954 -0.0064 7 7 4.2876 -2.4056 -0.0117 8 6 5.4385 -2.5141 -0.7046 9 8 5.8928 -1.5466 -1.2840 10 7 6.0858 -3.6952 -0.7551 11 6 7.2914 -3.7894 -1.4025 12 1 7.9439 -2.9304 -1.4564 13 6 7.6731 -4.9892 -1.9886 14 7 6.7693 -5.9040 -2.2619 15 14 9.4706 -5.3033 -2.3884 16 1 10.2733 -5.2423 -1.1404 17 1 9.6134 -6.6476 -3.0030 18 1 9.9542 -4.2699 -3.3389 19 6 5.5017 -4.8785 -0.1187 20 6 5.0430 -4.7449 1.3348 21 6 6.3031 -5.5468 1.0002 22 6 2.1968 -1.1962 -0.0059 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5181 26 1 1.6559 2.1325 0.0004 27 1 4.1168 2.1399 0.0086 28 1 5.3562 0.0135 -0.0010 29 1 3.9458 -3.1665 0.4833 30 1 7.0360 -6.7423 -2.6710 31 1 4.9170 -5.5242 -0.7738 32 1 5.1753 -3.7765 1.8174 33 1 4.1565 -5.3030 1.6361 34 1 6.2452 -6.6323 1.0815 35 1 7.2651 -5.1064 1.2626 36 1 1.6568 -2.1315 -0.0101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706781240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = 37.442314 kcal Electronic energy + Delta-G solvation = -19316.294610 eV Core-core repulsion = 16380.867649 eV Total energy + Delta-G solvation = -2935.426961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95649 -38.44790 -36.35963 -34.31132 -32.95374 -32.11130 -31.08797 -29.08730 -26.57221 -24.99970 -22.44599 -21.89369 -21.63812 -21.14501 -19.17889 -17.53668 -16.74010 -16.21262 -15.64453 -15.30318 -14.76466 -14.47553 -13.91635 -13.71039 -13.59379 -13.42637 -13.23502 -12.67511 -12.17752 -12.01809 -11.82342 -11.34663 -11.22257 -11.05494 -10.95250 -10.77615 -10.63476 -10.39646 -9.91888 -9.66376 -9.54634 -8.94510 -8.77292 -8.33550 -7.72183 -7.43039 -6.29826 -3.87685 1.76101 1.79825 3.22226 3.26609 3.28561 3.70783 4.02818 4.23388 4.40027 4.50976 4.91509 5.09183 5.16490 5.21863 5.45512 5.55005 5.57063 5.66394 5.69754 5.80914 5.89206 5.99754 6.00778 6.01476 6.20881 6.40075 6.48696 6.70965 6.79777 6.85245 6.95816 7.07161 7.14187 7.55243 7.61312 7.68919 8.35015 8.69795 9.19446 9.45877 10.04462 10.78473 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.005422 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.296664 B = 5162.552257 C = 5618.522177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.156 4.156 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.193 3.807 7 N -0.700 5.700 8 C 0.660 3.340 9 O -0.600 6.600 10 N -0.436 5.436 11 C -0.301 4.301 12 H 0.095 0.905 13 C 0.041 3.959 14 N -0.873 5.873 15 Si 0.920 3.080 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.119 3.881 20 C -0.234 4.234 21 C -0.157 4.157 22 C -0.162 4.162 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.403 0.597 30 H 0.266 0.734 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 4.425 7.382 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.074 4.074 3 C -0.175 4.175 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.095 3.905 7 N -0.350 5.350 8 C 0.364 3.636 9 O -0.481 6.481 10 N -0.159 5.159 11 C -0.429 4.429 12 H 0.113 0.887 13 C -0.164 4.164 14 N -0.510 5.510 15 Si 0.747 3.253 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.013 3.987 20 C -0.272 4.272 21 C -0.195 4.195 22 C -0.184 4.184 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.242 0.758 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.673 4.783 6.827 12.029 hybrid contribution 0.735 -0.842 -0.057 1.119 sum -7.938 3.941 6.769 11.152 Atomic orbital electron populations 1.20736 0.91592 1.02410 1.01849 1.19554 0.95432 0.92682 0.99723 1.20822 0.94211 0.96962 1.05541 1.20978 0.93955 0.97584 0.99356 1.21354 1.01480 0.90825 1.01283 1.17628 0.90250 0.86121 0.96480 1.43264 1.25052 1.12742 1.53948 1.16106 0.80260 0.85543 0.81675 1.90751 1.68159 1.37460 1.51709 1.42271 1.19683 1.04153 1.49787 1.19295 0.91761 0.98829 1.32978 0.88749 1.25237 0.99215 0.96719 0.95200 1.69963 1.32849 1.08095 1.40131 0.86099 0.82960 0.77467 0.78763 1.20007 1.21048 1.19851 1.21475 0.99878 0.91345 0.85959 1.23583 0.99884 1.02522 1.01256 1.22881 0.95084 0.98178 1.03359 1.20720 0.92310 0.97955 1.07392 0.91558 0.91838 0.91808 0.86817 0.86396 0.84427 0.75822 0.92407 0.86314 0.89093 0.88714 0.89294 0.88813 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.07 -1.03 5.88 -104.65 -0.62 -1.65 16 3 C -0.16 -2.20 9.70 -39.55 -0.38 -2.58 16 4 C -0.10 -1.57 10.04 -39.61 -0.40 -1.97 16 5 C -0.13 -2.45 8.68 -39.39 -0.34 -2.79 16 6 C 0.19 3.66 6.26 -83.70 -0.52 3.14 16 7 N -0.70 -14.22 4.77 -14.23 -0.07 -14.28 16 8 C 0.66 16.55 7.91 -86.92 -0.69 15.86 16 9 O -0.60 -16.90 13.71 5.29 0.07 -16.83 16 10 N -0.44 -11.07 2.90 -113.05 -0.33 -11.40 16 11 C -0.30 -8.32 8.91 -14.92 -0.13 -8.45 16 12 H 0.09 2.73 7.62 -52.48 -0.40 2.33 16 13 C 0.04 1.08 5.06 -17.47 -0.09 0.99 16 14 N -0.87 -23.20 11.60 55.49 0.64 -22.55 16 15 Si 0.92 20.68 29.59 -169.99 -5.03 15.65 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 C 0.12 2.56 3.93 -67.93 -0.27 2.30 16 20 C -0.23 -3.93 8.06 -26.69 -0.22 -4.14 16 21 C -0.16 -2.98 10.16 -26.69 -0.27 -3.25 16 22 C -0.16 -2.59 9.62 -39.39 -0.38 -2.97 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.14 2.94 6.38 -52.49 -0.34 2.61 16 29 H 0.40 7.17 5.21 -40.82 -0.21 6.96 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.12 2.73 7.48 -51.93 -0.39 2.34 16 32 H 0.09 1.54 7.29 -51.93 -0.38 1.17 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -30.69 303.30 -8.73 -39.42 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.65 Total: 11.72 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.94 Total: -6.29 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.25 Total: -48.24 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.07 Total: -16.83 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.69 -8.73 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706781240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.864 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds