Wall clock time and date at job start Mon Mar 30 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38306 * 119.96246 * 2 1 4 4 C 1.38260 * 120.14327 * 179.76799 * 3 2 1 5 5 C 1.38139 * 120.06945 * 0.50981 * 4 3 2 6 6 C 1.38858 * 119.92582 * 359.74983 * 5 4 3 7 7 N 1.39907 * 120.06697 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99946 * 323.60737 * 7 6 5 9 9 O 1.21585 * 120.00241 * 2.74511 * 8 7 6 10 10 N 1.34780 * 119.99581 * 182.74253 * 8 7 6 11 11 C 1.37172 * 119.99833 * 183.33599 * 10 8 7 12 12 H 1.08003 * 119.99879 * 29.16987 * 11 10 8 13 13 C 1.38882 * 120.00310 * 209.17012 * 11 10 8 14 14 N 1.31474 * 119.99587 * 19.18787 * 13 11 10 15 15 Si 1.86798 * 120.00142 * 199.19281 * 13 11 10 16 16 H 1.48505 * 109.47160 * 60.00180 * 15 13 11 17 17 H 1.48502 * 109.46887 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47302 * 299.99829 * 15 13 11 19 19 C 1.46497 * 120.00252 * 3.34267 * 10 8 7 20 20 C 1.53006 * 117.49584 * 309.34025 * 19 10 8 21 21 C 1.53002 * 117.49499 * 240.68629 * 19 10 8 22 22 C 1.38084 * 119.96579 * 180.28221 * 2 1 3 23 23 H 1.09002 * 109.46731 * 269.71904 * 1 2 3 24 24 H 1.08999 * 109.47267 * 29.72220 * 1 2 3 25 25 H 1.09006 * 109.46810 * 149.72486 * 1 2 3 26 26 H 1.08003 * 119.92474 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.96732 * 180.22973 * 4 3 2 28 28 H 1.07994 * 120.03261 * 179.76392 * 5 4 3 29 29 H 0.97000 * 119.99336 * 143.60612 * 7 6 5 30 30 H 0.97007 * 119.99463 * 180.02562 * 14 13 11 31 31 H 1.08999 * 115.55337 * 95.01832 * 19 10 8 32 32 H 1.09000 * 117.49823 * 0.02562 * 20 19 10 33 33 H 1.09002 * 117.49436 * 145.02172 * 20 19 10 34 34 H 1.09007 * 117.49468 * 214.97752 * 21 19 10 35 35 H 1.09004 * 117.50083 * 359.97377 * 21 19 10 36 36 H 1.07997 * 120.03626 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0048 5 6 4.2763 0.0093 -0.0009 6 6 3.5858 -1.1954 -0.0064 7 7 4.2876 -2.4056 -0.0117 8 6 5.4385 -2.5141 -0.7046 9 8 5.8928 -1.5466 -1.2840 10 7 6.0858 -3.6952 -0.7551 11 6 7.2914 -3.7894 -1.4025 12 1 7.9439 -2.9304 -1.4564 13 6 7.6731 -4.9892 -1.9886 14 7 6.7693 -5.9040 -2.2619 15 14 9.4706 -5.3033 -2.3884 16 1 10.2733 -5.2423 -1.1404 17 1 9.6134 -6.6476 -3.0030 18 1 9.9542 -4.2699 -3.3389 19 6 5.5017 -4.8785 -0.1187 20 6 5.0430 -4.7449 1.3348 21 6 6.3031 -5.5468 1.0002 22 6 2.1968 -1.1962 -0.0059 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5181 26 1 1.6559 2.1325 0.0004 27 1 4.1168 2.1399 0.0086 28 1 5.3562 0.0135 -0.0010 29 1 3.9458 -3.1665 0.4833 30 1 7.0360 -6.7423 -2.6710 31 1 4.9170 -5.5242 -0.7738 32 1 5.1753 -3.7765 1.8174 33 1 4.1565 -5.3030 1.6361 34 1 6.2452 -6.6323 1.0815 35 1 7.2651 -5.1064 1.2626 36 1 1.6568 -2.1315 -0.0101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706781240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:44 Heat of formation + Delta-G solvation = 19.907638 kcal Electronic energy + Delta-G solvation = -19317.054971 eV Core-core repulsion = 16380.867649 eV Total energy + Delta-G solvation = -2936.187322 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60532 -39.87500 -38.05716 -35.95141 -34.80420 -33.38405 -32.90190 -30.49938 -27.63478 -26.94215 -23.96281 -23.44422 -22.96721 -22.69765 -20.81008 -19.31992 -18.49333 -17.69428 -17.25954 -16.84378 -16.31075 -16.11987 -15.68597 -15.29100 -15.12961 -14.65817 -14.45967 -13.90168 -13.88724 -13.27624 -13.07621 -12.88775 -12.86160 -12.59208 -12.45247 -12.36883 -12.15881 -11.97577 -11.63414 -11.31899 -11.07114 -10.85497 -10.58398 -9.66923 -9.56383 -8.90468 -8.30417 -5.95856 0.48336 0.52915 1.40600 1.41567 1.50392 2.02682 2.31460 2.45228 2.82676 2.98290 3.15755 3.38034 4.02017 4.04873 4.07458 4.19308 4.33237 4.38740 4.54287 4.59683 4.66867 4.68103 4.95063 4.96910 4.99360 5.04608 5.24910 5.29833 5.36950 5.46815 5.52607 5.58618 5.71809 5.81965 5.89755 6.26765 6.35383 6.84523 7.20671 7.55939 8.12258 8.76034 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.005422 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.296664 B = 5162.552257 C = 5618.522177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.160 4.160 6 C 0.157 3.843 7 N -0.686 5.686 8 C 0.651 3.349 9 O -0.645 6.645 10 N -0.448 5.448 11 C -0.335 4.335 12 H 0.064 0.936 13 C 0.012 3.988 14 N -0.887 5.887 15 Si 0.980 3.020 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.280 1.280 19 C 0.085 3.915 20 C -0.190 4.190 21 C -0.156 4.156 22 C -0.162 4.162 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.413 0.587 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.517 4.312 8.466 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.165 4.165 4 C -0.121 4.121 5 C -0.181 4.181 6 C 0.061 3.939 7 N -0.337 5.337 8 C 0.355 3.645 9 O -0.530 6.530 10 N -0.170 5.170 11 C -0.463 4.463 12 H 0.082 0.918 13 C -0.191 4.191 14 N -0.524 5.524 15 Si 0.804 3.196 16 H -0.191 1.191 17 H -0.195 1.195 18 H -0.206 1.206 19 C -0.020 4.020 20 C -0.228 4.228 21 C -0.194 4.194 22 C -0.183 4.183 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.170 0.830 27 H 0.155 0.845 28 H 0.118 0.882 29 H 0.254 0.746 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.135 4.656 7.949 14.451 hybrid contribution 1.365 -0.704 -0.396 1.586 sum -9.769 3.951 7.554 12.966 Atomic orbital electron populations 1.20822 0.88285 1.03737 1.03493 1.20087 0.97727 0.91790 0.97335 1.21280 0.93380 0.98722 1.03150 1.21229 0.95181 0.97030 0.98661 1.21235 0.99993 0.92757 1.04103 1.17964 0.91616 0.85313 0.99010 1.42921 1.23648 1.13848 1.53326 1.16409 0.81206 0.85067 0.81860 1.90696 1.69626 1.38958 1.53701 1.42387 1.19260 1.05249 1.50109 1.19217 0.93031 0.98751 1.35267 0.91769 1.25907 1.02874 0.95887 0.94435 1.70038 1.34259 1.08243 1.39853 0.85210 0.78290 0.77472 0.78632 1.19112 1.19547 1.20563 1.21412 1.02082 0.90896 0.87595 1.23641 1.00267 1.02335 0.96533 1.22901 0.95237 0.99384 1.01882 1.20978 0.90825 0.99862 1.06634 0.89571 0.90016 0.91101 0.83048 0.84459 0.88239 0.74573 0.91966 0.88026 0.89283 0.84377 0.87325 0.90574 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 2 C -0.07 -1.71 5.88 -19.88 -0.12 -1.83 16 3 C -0.15 -3.67 9.70 22.29 0.22 -3.45 16 4 C -0.10 -3.15 10.04 22.25 0.22 -2.93 16 5 C -0.16 -6.37 8.68 22.39 0.19 -6.18 16 6 C 0.16 6.06 6.26 38.16 0.24 6.30 16 7 N -0.69 -28.71 4.77 -317.20 -1.51 -30.23 16 8 C 0.65 34.48 7.91 179.06 1.42 35.90 16 9 O -0.65 -39.10 13.71 -3.98 -0.05 -39.16 16 10 N -0.45 -23.79 2.90 -629.83 -1.82 -25.61 16 11 C -0.33 -19.46 8.91 84.01 0.75 -18.72 16 12 H 0.06 4.01 7.62 -2.91 -0.02 3.99 16 13 C 0.01 0.67 5.06 84.90 0.43 1.10 16 14 N -0.89 -47.72 11.60 21.65 0.25 -47.47 16 15 Si 0.98 43.11 29.59 68.60 2.03 45.14 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.08 3.70 3.93 44.99 0.18 3.88 16 20 C -0.19 -6.07 8.06 30.62 0.25 -5.83 16 21 C -0.16 -5.84 10.16 30.62 0.31 -5.53 16 22 C -0.16 -4.90 9.62 22.39 0.22 -4.69 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 26 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 27 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.10 4.67 6.38 -2.91 -0.02 4.65 16 29 H 0.41 14.68 5.21 -92.71 -0.48 14.20 16 30 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 31 H 0.10 4.75 7.48 -2.39 -0.02 4.73 16 32 H 0.09 2.93 7.29 -2.39 -0.02 2.91 16 33 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 35 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -71.59 303.30 4.51 -67.08 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.60 Total: 33.24 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.01 Total: -2.99 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.09 Total: -103.31 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.05 Total: -39.16 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.59 4.51 -67.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706781240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.992 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds