Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99810 * 3 2 1 6 6 H 1.48496 * 109.47021 * 60.00226 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.48084 * 299.97720 * 9 7 2 11 11 C 1.53092 * 109.49090 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.16358 * 297.61947 * 11 9 7 13 13 C 1.53181 * 109.04776 * 303.02540 * 12 11 9 14 14 C 1.53099 * 109.16175 * 56.96381 * 13 12 11 15 15 H 1.08998 * 109.47832 * 62.39250 * 14 13 12 16 16 C 1.52997 * 109.48244 * 182.42298 * 14 13 12 17 17 H 1.09001 * 110.66811 * 308.20949 * 16 14 13 18 18 C 1.54891 * 110.75763 * 71.64344 * 16 14 13 19 19 C 1.54267 * 104.19324 * 156.25900 * 18 16 14 20 20 C 1.53876 * 106.59870 * 336.39035 * 19 18 16 21 21 F 1.39904 * 110.03063 * 119.28589 * 20 19 18 22 22 F 1.39894 * 110.03071 * 240.71362 * 20 19 18 23 23 C 1.54261 * 106.59990 * 0.02562 * 20 19 18 24 24 O 1.42902 * 109.41878 * 302.41013 * 14 13 12 25 25 H 0.97004 * 119.99686 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52397 * 57.52717 * 11 9 7 27 27 H 1.09001 * 109.52402 * 177.65519 * 11 9 7 28 28 H 1.09000 * 109.54368 * 62.88561 * 12 11 9 29 29 H 1.08998 * 109.54477 * 183.06635 * 12 11 9 30 30 H 1.08999 * 109.51684 * 297.06519 * 13 12 11 31 31 H 1.09003 * 109.53211 * 176.86949 * 13 12 11 32 32 H 1.09004 * 110.48613 * 37.58272 * 18 16 14 33 33 H 1.08994 * 110.48745 * 274.93690 * 18 16 14 34 34 H 1.08995 * 110.03032 * 217.10762 * 19 18 16 35 35 H 1.08998 * 110.03405 * 95.67701 * 19 18 16 36 36 H 1.09000 * 110.48928 * 142.28640 * 23 20 19 37 37 H 1.09001 * 110.48691 * 264.79667 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6243 -2.5570 0.8904 11 6 2.2454 -3.6631 0.0005 12 6 3.0820 -3.6097 -1.2815 13 6 2.1444 -3.6462 -2.4922 14 6 1.1536 -2.4830 -2.3958 15 1 1.6974 -1.5389 -2.4273 16 6 0.1749 -2.5477 -3.5700 17 1 0.7125 -2.6254 -4.5151 18 6 -0.8127 -3.7282 -3.3971 19 6 -2.0393 -3.3218 -4.2398 20 6 -2.0075 -1.7874 -4.3507 21 9 -1.9061 -1.4059 -5.6929 22 9 -3.1639 -1.2418 -3.7830 23 6 -0.7624 -1.3149 -3.5721 24 8 0.4303 -2.5756 -1.1668 25 1 -0.4850 0.8401 0.0004 26 1 2.9014 -3.5818 0.8672 27 1 1.7016 -4.6068 0.0426 28 1 3.6640 -2.6883 -1.2989 29 1 3.7548 -4.4667 -1.3138 30 1 1.5985 -4.5897 -2.5017 31 1 2.7280 -3.5526 -3.4081 32 1 -1.0907 -3.8427 -2.3493 33 1 -0.3757 -4.6505 -3.7797 34 1 -2.9557 -3.6413 -3.7436 35 1 -1.9757 -3.7692 -5.2316 36 1 -0.2890 -0.4761 -4.0823 37 1 -1.0323 -1.0374 -2.5531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713055291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -175.504134 kcal Electronic energy + Delta-G solvation = -21234.288231 eV Core-core repulsion = 17838.938033 eV Total energy + Delta-G solvation = -3395.350199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.50709 -46.58099 -38.74652 -36.34435 -32.63649 -32.24386 -30.64559 -28.53300 -26.97290 -25.36537 -23.00712 -22.02740 -20.59411 -19.79184 -18.80223 -17.19888 -16.52012 -16.10824 -15.52362 -14.88353 -14.54204 -14.41097 -14.00351 -13.80427 -13.58028 -13.43743 -12.94247 -12.80429 -12.59392 -12.27543 -11.81035 -11.48309 -11.32788 -11.22254 -11.02334 -10.94882 -10.81835 -10.58795 -10.33849 -10.27669 -10.19315 -10.03805 -9.61916 -9.46041 -8.69987 -8.46389 -7.77379 -6.01382 -4.15894 3.25083 3.34997 3.37132 4.14049 4.37926 4.39145 4.63176 4.77252 5.08758 5.39478 5.41175 5.53092 5.59869 5.69314 5.77688 5.78320 5.88471 5.90436 5.95941 6.17739 6.25993 6.38894 6.41242 6.46269 6.49205 6.67824 6.73663 6.90407 6.91887 6.99114 7.06674 7.17682 7.69186 7.86058 8.20154 8.80644 9.06965 9.56381 11.02501 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.008738 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.728498 B = 3203.773169 C = 4121.812270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.213 3.787 10 H 0.060 0.940 11 C -0.141 4.141 12 C -0.109 4.109 13 C -0.142 4.142 14 C 0.114 3.886 15 H 0.065 0.935 16 C -0.079 4.079 17 H 0.077 0.923 18 C -0.110 4.110 19 C -0.160 4.160 20 C 0.277 3.723 21 F -0.209 7.209 22 F -0.203 7.203 23 C -0.152 4.152 24 O -0.365 6.365 25 H 0.259 0.741 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -6.503 -7.364 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.124 4.124 3 Si 0.706 3.294 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.157 3.843 10 H 0.077 0.923 11 C -0.179 4.179 12 C -0.146 4.146 13 C -0.180 4.180 14 C 0.055 3.945 15 H 0.083 0.917 16 C -0.098 4.098 17 H 0.096 0.904 18 C -0.148 4.148 19 C -0.198 4.198 20 C 0.241 3.759 21 F -0.190 7.190 22 F -0.184 7.184 23 C -0.189 4.189 24 O -0.284 6.284 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.914 -6.396 -7.370 9.802 hybrid contribution 0.662 1.191 -0.152 1.371 sum -0.252 -5.206 -7.522 9.151 Atomic orbital electron populations 1.70044 1.05662 1.26198 1.47477 1.24986 0.94655 0.98716 0.94091 0.86776 0.80403 0.84499 0.77746 1.19805 1.20942 1.20945 1.21567 0.93110 0.91145 1.53515 0.92591 1.19685 0.88563 0.90835 0.85212 0.92265 1.22173 0.99274 0.99683 0.96808 1.21429 0.97375 1.00642 0.95169 1.22142 0.98298 0.99834 0.97687 1.21343 0.90711 0.96857 0.85543 0.91726 1.22106 0.95724 0.93652 0.98301 0.90444 1.22319 0.93266 0.97707 1.01460 1.23145 1.02154 0.91711 1.02830 1.22048 0.84639 0.93630 0.75624 1.92960 1.96411 1.93035 1.36637 1.92987 1.52700 1.88005 1.84670 1.23402 0.92652 0.99133 1.03745 1.87858 1.34703 1.93412 1.12462 0.93088 0.92758 0.94142 0.91428 0.94277 0.92615 0.93000 0.88773 0.91387 0.89341 0.89761 0.90236 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 12.84 55.43 0.71 -22.88 16 2 C 0.08 2.14 5.40 -17.82 -0.10 2.05 16 3 Si 0.88 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.56 -14.27 6.59 -34.44 -0.23 -14.50 16 8 H 0.06 1.44 6.87 -52.48 -0.36 1.08 16 9 C 0.21 5.07 3.16 -27.84 -0.09 4.99 16 10 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 11 C -0.14 -2.82 5.59 -26.59 -0.15 -2.97 16 12 C -0.11 -1.97 5.78 -26.55 -0.15 -2.13 16 13 C -0.14 -2.43 5.34 -26.59 -0.14 -2.58 16 14 C 0.11 2.25 2.13 -26.68 -0.06 2.20 16 15 H 0.06 1.46 7.09 -51.93 -0.37 1.10 16 16 C -0.08 -1.34 2.74 -88.64 -0.24 -1.58 16 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.11 -1.66 5.61 -25.07 -0.14 -1.80 16 19 C -0.16 -2.27 6.50 -25.61 -0.17 -2.43 16 20 C 0.28 4.67 2.57 -25.61 -0.07 4.61 16 21 F -0.21 -3.54 17.04 2.25 0.04 -3.50 16 22 F -0.20 -3.77 17.04 2.25 0.04 -3.73 16 23 C -0.15 -2.79 5.81 -25.09 -0.15 -2.93 16 24 O -0.37 -8.37 7.79 -35.23 -0.27 -8.64 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.32 6.85 -51.93 -0.36 0.97 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.90 7.55 -51.93 -0.39 0.51 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.62 6.98 -51.93 -0.36 1.26 16 33 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 34 H 0.09 1.18 8.02 -51.93 -0.42 0.76 16 35 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 36 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 37 H 0.13 2.79 7.58 -51.93 -0.39 2.39 16 LS Contribution 295.06 15.07 4.45 4.45 Total: -1.00 -26.91 295.06 -7.31 -34.22 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.58 Total: 1.66 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.67 Total: -17.09 kcal Atomic # 7 Polarization: -23.59 SS G_CDS: 0.71 Total: -22.88 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.27 Total: -8.64 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.08 Total: -7.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.91 -7.31 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713055291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.280 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds