Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99810 * 3 2 1 6 6 H 1.48496 * 109.47021 * 60.00226 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.48084 * 299.97720 * 9 7 2 11 11 C 1.53092 * 109.49090 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.16358 * 297.61947 * 11 9 7 13 13 C 1.53181 * 109.04776 * 303.02540 * 12 11 9 14 14 C 1.53099 * 109.16175 * 56.96381 * 13 12 11 15 15 H 1.08998 * 109.47832 * 62.39250 * 14 13 12 16 16 C 1.52997 * 109.48244 * 182.42298 * 14 13 12 17 17 H 1.09001 * 110.66811 * 308.20949 * 16 14 13 18 18 C 1.54891 * 110.75763 * 71.64344 * 16 14 13 19 19 C 1.54267 * 104.19324 * 156.25900 * 18 16 14 20 20 C 1.53876 * 106.59870 * 336.39035 * 19 18 16 21 21 F 1.39904 * 110.03063 * 119.28589 * 20 19 18 22 22 F 1.39894 * 110.03071 * 240.71362 * 20 19 18 23 23 C 1.54261 * 106.59990 * 0.02562 * 20 19 18 24 24 O 1.42902 * 109.41878 * 302.41013 * 14 13 12 25 25 H 0.97004 * 119.99686 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52397 * 57.52717 * 11 9 7 27 27 H 1.09001 * 109.52402 * 177.65519 * 11 9 7 28 28 H 1.09000 * 109.54368 * 62.88561 * 12 11 9 29 29 H 1.08998 * 109.54477 * 183.06635 * 12 11 9 30 30 H 1.08999 * 109.51684 * 297.06519 * 13 12 11 31 31 H 1.09003 * 109.53211 * 176.86949 * 13 12 11 32 32 H 1.09004 * 110.48613 * 37.58272 * 18 16 14 33 33 H 1.08994 * 110.48745 * 274.93690 * 18 16 14 34 34 H 1.08995 * 110.03032 * 217.10762 * 19 18 16 35 35 H 1.08998 * 110.03405 * 95.67701 * 19 18 16 36 36 H 1.09000 * 110.48928 * 142.28640 * 23 20 19 37 37 H 1.09001 * 110.48691 * 264.79667 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6243 -2.5570 0.8904 11 6 2.2454 -3.6631 0.0005 12 6 3.0820 -3.6097 -1.2815 13 6 2.1444 -3.6462 -2.4922 14 6 1.1536 -2.4830 -2.3958 15 1 1.6974 -1.5389 -2.4273 16 6 0.1749 -2.5477 -3.5700 17 1 0.7125 -2.6254 -4.5151 18 6 -0.8127 -3.7282 -3.3971 19 6 -2.0393 -3.3218 -4.2398 20 6 -2.0075 -1.7874 -4.3507 21 9 -1.9061 -1.4059 -5.6929 22 9 -3.1639 -1.2418 -3.7830 23 6 -0.7624 -1.3149 -3.5721 24 8 0.4303 -2.5756 -1.1668 25 1 -0.4850 0.8401 0.0004 26 1 2.9014 -3.5818 0.8672 27 1 1.7016 -4.6068 0.0426 28 1 3.6640 -2.6883 -1.2989 29 1 3.7548 -4.4667 -1.3138 30 1 1.5985 -4.5897 -2.5017 31 1 2.7280 -3.5526 -3.4081 32 1 -1.0907 -3.8427 -2.3493 33 1 -0.3757 -4.6505 -3.7797 34 1 -2.9557 -3.6413 -3.7436 35 1 -1.9757 -3.7692 -5.2316 36 1 -0.2890 -0.4761 -4.0823 37 1 -1.0323 -1.0374 -2.5531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713055291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -189.005062 kcal Electronic energy + Delta-G solvation = -21234.873675 eV Core-core repulsion = 17838.938033 eV Total energy + Delta-G solvation = -3395.935643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89032 -47.97619 -40.31535 -37.78399 -34.52377 -33.90996 -32.22464 -29.91673 -28.51697 -27.12919 -24.58721 -23.61922 -21.93304 -21.22915 -20.46156 -18.57574 -18.24179 -17.61520 -17.02065 -16.63158 -16.23988 -15.97142 -15.31624 -15.24214 -15.15445 -15.03629 -14.43006 -14.31907 -14.09277 -13.77716 -13.48569 -13.00162 -12.87336 -12.73955 -12.68538 -12.49648 -12.42887 -12.14888 -11.96204 -11.76262 -11.66212 -11.39498 -11.23722 -11.04870 -10.64100 -10.33890 -9.50295 -8.05432 -6.24498 1.35303 1.39943 1.48194 2.40910 2.83200 3.03793 3.16956 3.31350 3.48768 3.69602 4.06005 4.20023 4.29044 4.35443 4.36364 4.46143 4.47170 4.56798 4.69118 4.77849 4.85521 4.92552 4.99449 5.07975 5.16745 5.21662 5.28073 5.35518 5.40131 5.47423 5.55700 5.63949 5.75780 5.90476 6.22677 6.81860 7.24834 7.52583 8.97503 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.008738 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.728498 B = 3203.773169 C = 4121.812270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.052 0.948 9 C 0.208 3.792 10 H 0.022 0.978 11 C -0.135 4.135 12 C -0.107 4.107 13 C -0.135 4.135 14 C 0.110 3.890 15 H 0.027 0.973 16 C -0.075 4.075 17 H 0.107 0.893 18 C -0.103 4.103 19 C -0.150 4.150 20 C 0.274 3.726 21 F -0.207 7.207 22 F -0.217 7.217 23 C -0.154 4.154 24 O -0.380 6.380 25 H 0.256 0.744 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -8.288 -9.184 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.166 4.166 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.152 3.848 10 H 0.039 0.961 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.173 4.173 14 C 0.052 3.948 15 H 0.045 0.955 16 C -0.094 4.094 17 H 0.126 0.874 18 C -0.140 4.140 19 C -0.187 4.187 20 C 0.238 3.762 21 F -0.188 7.188 22 F -0.198 7.198 23 C -0.193 4.193 24 O -0.300 6.300 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.078 -8.185 -9.189 12.306 hybrid contribution 0.359 1.776 0.428 1.862 sum 0.437 -6.409 -8.761 10.864 Atomic orbital electron populations 1.70168 1.06899 1.26494 1.48983 1.25616 0.95269 1.01561 0.94156 0.85908 0.79580 0.81141 0.77426 1.19057 1.21073 1.20897 1.21808 0.92971 0.92244 1.52463 0.92934 1.19539 0.88637 0.91928 0.84728 0.96050 1.22052 0.98633 0.98424 0.98196 1.21420 0.97524 1.01062 0.94434 1.22098 0.97685 0.99095 0.98405 1.21471 0.91726 0.96515 0.85130 0.95524 1.22152 0.95440 0.93568 0.98194 0.87444 1.22259 0.93184 0.98209 1.00364 1.23138 1.02098 0.88992 1.04505 1.22210 0.83246 0.95503 0.75251 1.92960 1.96327 1.93249 1.36283 1.92960 1.53366 1.88487 1.84997 1.23293 0.94277 1.00236 1.01447 1.87805 1.35369 1.93513 1.13289 0.93495 0.92804 0.92641 0.93420 0.90994 0.90749 0.90260 0.91418 0.87952 0.88508 0.86604 0.90722 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.99 12.84 21.45 0.28 -50.72 16 2 C 0.04 1.98 5.40 84.65 0.46 2.44 16 3 Si 0.93 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.56 -29.34 6.59 25.60 0.17 -29.17 16 8 H 0.05 2.75 6.87 -2.91 -0.02 2.73 16 9 C 0.21 10.17 3.16 29.88 0.09 10.27 16 10 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 11 C -0.14 -5.27 5.59 30.68 0.17 -5.10 16 12 C -0.11 -3.63 5.78 30.71 0.18 -3.45 16 13 C -0.14 -4.22 5.34 30.69 0.16 -4.06 16 14 C 0.11 4.27 2.13 30.63 0.07 4.33 16 15 H 0.03 1.23 7.09 -2.39 -0.02 1.21 16 16 C -0.08 -2.41 2.74 -9.51 -0.03 -2.43 16 17 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.10 -2.81 5.61 31.67 0.18 -2.63 16 19 C -0.15 -3.79 6.50 31.32 0.20 -3.58 16 20 C 0.27 8.95 2.57 31.32 0.08 9.03 16 21 F -0.21 -6.61 17.04 44.97 0.77 -5.84 16 22 F -0.22 -8.10 17.04 44.97 0.77 -7.33 16 23 C -0.15 -5.73 5.81 31.66 0.18 -5.55 16 24 O -0.38 -17.78 7.79 -148.98 -1.16 -18.94 16 25 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.80 6.85 -2.39 -0.02 1.78 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.08 7.55 -2.39 -0.02 2.07 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.24 6.98 -2.38 -0.02 2.22 16 33 H 0.10 2.13 8.04 -2.39 -0.02 2.12 16 34 H 0.10 2.33 8.02 -2.39 -0.02 2.31 16 35 H 0.12 2.27 8.02 -2.39 -0.02 2.25 16 36 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 37 H 0.08 3.86 7.58 -2.39 -0.02 3.84 16 Total: -1.00 -60.38 295.06 5.64 -54.74 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.05 Total: 12.83 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 1.92 Total: -29.90 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.28 Total: -50.72 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.16 Total: -18.94 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 1.53 Total: -13.18 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -60.38 5.64 -54.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713055291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.265 kcal (2) G-P(sol) polarization free energy of solvation -60.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds