Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99569 * 2 1 4 4 H 1.48504 * 109.47395 * 264.80307 * 3 2 1 5 5 H 1.48506 * 109.47387 * 24.80679 * 3 2 1 6 6 H 1.48496 * 109.47281 * 144.80578 * 3 2 1 7 7 C 1.37871 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00170 * 4.85411 * 7 2 1 9 9 C 1.50700 * 120.00188 * 184.85612 * 7 2 1 10 10 H 1.09005 * 109.48893 * 334.88461 * 9 7 2 11 11 C 1.53087 * 109.48251 * 214.85001 * 9 7 2 12 12 C 1.53177 * 109.16363 * 182.40513 * 11 9 7 13 13 C 1.53179 * 109.04473 * 56.98063 * 12 11 9 14 14 C 1.53098 * 109.16245 * 303.03378 * 13 12 11 15 15 H 1.08997 * 109.47700 * 297.60697 * 14 13 12 16 16 C 1.52990 * 109.48254 * 177.57925 * 14 13 12 17 17 H 1.09001 * 110.81904 * 51.71192 * 16 14 13 18 18 C 1.54888 * 110.75619 * 175.04380 * 16 14 13 19 19 C 1.54267 * 104.31678 * 156.32420 * 18 16 14 20 20 C 1.53872 * 106.59481 * 336.32525 * 19 18 16 21 21 F 1.39899 * 110.03458 * 119.28355 * 20 19 18 22 22 F 1.39901 * 110.03427 * 240.71445 * 20 19 18 23 23 C 1.54265 * 106.60006 * 0.02562 * 20 19 18 24 24 O 1.42909 * 109.42244 * 57.59099 * 14 13 12 25 25 H 0.96998 * 120.00586 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.52587 * 302.31420 * 11 9 7 27 27 H 1.09001 * 109.52132 * 62.50625 * 11 9 7 28 28 H 1.08999 * 109.54523 * 176.84640 * 12 11 9 29 29 H 1.08997 * 109.54690 * 297.02751 * 12 11 9 30 30 H 1.08996 * 109.53389 * 183.12618 * 13 12 11 31 31 H 1.09001 * 109.51880 * 62.93008 * 13 12 11 32 32 H 1.09003 * 110.49096 * 37.57924 * 18 16 14 33 33 H 1.08999 * 110.49007 * 275.06870 * 18 16 14 34 34 H 1.09000 * 110.02915 * 95.60662 * 19 18 16 35 35 H 1.08999 * 110.03387 * 217.03837 * 19 18 16 36 36 H 1.09002 * 110.49051 * 142.29575 * 23 20 19 37 37 H 1.09009 * 110.48327 * 264.92847 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6063 1.9832 -1.3943 5 1 1.3958 2.6820 0.5874 6 1 3.4873 1.4746 0.8069 7 6 2.0046 -1.1939 -0.0005 8 1 1.4675 -2.1276 -0.0801 9 6 3.5075 -1.1963 0.1099 10 1 3.9007 -0.2486 -0.2582 11 6 4.0791 -2.3451 -0.7250 12 6 5.6015 -2.3778 -0.5597 13 6 5.9400 -2.5160 0.9278 14 6 5.2963 -1.3607 1.6991 15 1 5.7128 -0.4152 1.3518 16 6 5.5792 -1.5248 3.1936 17 1 6.6448 -1.6681 3.3728 18 6 5.0478 -0.3070 3.9898 19 6 4.8373 -0.8481 5.4190 20 6 4.6531 -2.3703 5.2900 21 9 5.6586 -3.0365 5.9986 22 9 3.3956 -2.7438 5.7761 23 6 4.7588 -2.7012 3.7869 24 8 3.8845 -1.3696 1.4775 25 1 -0.4851 0.8400 -0.0004 26 1 3.6553 -3.2894 -0.3837 27 1 3.8300 -2.1913 -1.7750 28 1 6.0096 -3.2276 -1.1069 29 1 6.0305 -1.4541 -0.9482 30 1 7.0214 -2.4843 1.0600 31 1 5.5539 -3.4639 1.3026 32 1 4.1036 0.0404 3.5705 33 1 5.7826 0.4980 3.9911 34 1 5.7101 -0.6284 6.0337 35 1 3.9469 -0.4003 5.8604 36 1 5.2840 -3.6450 3.6400 37 1 3.7679 -2.7405 3.3344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713055292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -193.390924 kcal Electronic energy + Delta-G solvation = -20886.915882 eV Core-core repulsion = 17490.790053 eV Total energy + Delta-G solvation = -3396.125828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.90795 -47.99313 -40.47373 -37.88220 -34.91478 -34.21188 -32.63134 -29.86091 -29.07512 -27.29248 -24.63770 -23.25550 -22.05087 -21.30272 -20.71070 -19.07223 -18.53773 -17.71163 -17.42183 -16.80016 -16.32479 -15.88399 -15.45235 -15.32836 -15.22338 -15.00886 -14.76904 -14.38520 -14.35148 -13.96455 -13.73035 -13.10557 -12.98390 -12.93349 -12.72121 -12.63238 -12.36856 -12.13664 -11.90252 -11.79337 -11.73633 -11.51732 -11.44603 -11.16499 -11.02752 -10.60937 -9.86389 -8.38173 -6.49895 1.31564 1.34519 1.46463 2.30624 2.75333 2.80187 3.00320 3.21172 3.43890 3.62825 3.89342 4.05345 4.14565 4.17040 4.27708 4.34205 4.39134 4.42630 4.50287 4.58975 4.64025 4.77849 4.79658 4.90098 4.99744 5.07731 5.14763 5.15437 5.19826 5.26025 5.31442 5.43119 5.55406 5.64565 6.21233 6.61570 6.98620 7.22989 8.77693 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.007560 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.852807 B = 3702.693662 C = 4309.189225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.029 0.971 9 C 0.189 3.811 10 H 0.020 0.980 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.141 4.141 14 C 0.078 3.922 15 H 0.054 0.946 16 C -0.073 4.073 17 H 0.123 0.877 18 C -0.118 4.118 19 C -0.153 4.153 20 C 0.272 3.728 21 F -0.203 7.203 22 F -0.218 7.218 23 C -0.151 4.151 24 O -0.399 6.399 25 H 0.270 0.730 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.001 -0.599 6.908 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.559 4.559 8 H 0.048 0.952 9 C 0.133 3.867 10 H 0.037 0.963 11 C -0.173 4.173 12 C -0.156 4.156 13 C -0.179 4.179 14 C 0.020 3.980 15 H 0.072 0.928 16 C -0.091 4.091 17 H 0.141 0.859 18 C -0.156 4.156 19 C -0.191 4.191 20 C 0.237 3.763 21 F -0.185 7.185 22 F -0.199 7.199 23 C -0.189 4.189 24 O -0.320 6.320 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.701 -0.562 7.086 18.150 hybrid contribution -0.701 0.309 -0.161 0.783 sum 15.999 -0.252 6.926 17.436 Atomic orbital electron populations 1.70063 1.08427 1.28623 1.50411 1.26085 0.95537 1.03529 0.92561 0.85705 0.79511 0.77925 0.79683 1.18441 1.21021 1.16996 1.21145 0.91304 0.93189 1.50233 0.95229 1.19970 0.92599 0.93693 0.80438 0.96255 1.22040 0.96226 0.99043 0.99977 1.21647 0.94472 1.02592 0.96877 1.22168 1.01709 0.98860 0.95137 1.22094 0.83798 0.97560 0.94562 0.92840 1.22242 1.00584 0.93681 0.92586 0.85866 1.22388 1.02346 0.98270 0.92587 1.23129 1.05961 0.89744 1.00259 1.22172 0.70616 0.93216 0.90344 1.92975 1.60896 1.83358 1.81231 1.92977 1.43481 1.93363 1.90072 1.23330 1.03990 1.01268 0.90310 1.88198 1.21026 1.93594 1.29156 0.92096 0.93722 0.92185 0.90222 0.91528 0.88429 0.91940 0.92621 0.88001 0.86431 0.89112 0.88366 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.44 0.30 -58.28 16 2 C 0.02 1.32 5.47 84.65 0.46 1.78 16 3 Si 0.95 43.90 26.99 68.60 1.85 45.75 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.67 6.83 99.48 0.68 -9.99 16 7 C -0.52 -30.43 9.24 25.60 0.24 -30.19 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C 0.19 8.81 2.30 29.88 0.07 8.88 16 10 H 0.02 0.90 5.31 -2.38 -0.01 0.89 16 11 C -0.13 -5.28 5.40 30.68 0.17 -5.11 16 12 C -0.12 -3.38 6.03 30.71 0.19 -3.20 16 13 C -0.14 -3.69 5.34 30.69 0.16 -3.53 16 14 C 0.08 2.41 2.41 30.62 0.07 2.49 16 15 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.07 -1.84 2.75 -9.40 -0.03 -1.86 16 17 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.12 -2.98 6.23 31.67 0.20 -2.79 16 19 C -0.15 -3.55 6.50 31.32 0.20 -3.35 16 20 C 0.27 7.65 2.58 31.32 0.08 7.73 16 21 F -0.20 -5.49 17.04 44.97 0.77 -4.72 16 22 F -0.22 -7.35 17.04 44.97 0.77 -6.59 16 23 C -0.15 -4.37 5.21 31.78 0.17 -4.20 16 24 O -0.40 -17.33 8.20 -148.98 -1.22 -18.55 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 32 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.12 2.05 8.02 -2.39 -0.02 2.03 16 35 H 0.09 2.15 8.02 -2.39 -0.02 2.13 16 36 H 0.10 2.49 8.03 -2.39 -0.02 2.48 16 37 H 0.08 3.04 6.97 -2.38 -0.02 3.02 16 Total: -1.00 -67.73 296.70 5.46 -62.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.02 Total: 13.46 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 1.98 Total: -33.35 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.22 Total: -18.55 kcal Atomic # 9 Polarization: -12.84 SS G_CDS: 1.53 Total: -11.31 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.85 Total: 45.75 kcal Total: -67.73 5.46 -62.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713055292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.118 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds