Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.56076 * 2 1 4 4 C 1.53069 * 117.51275 * 145.69772 * 2 1 3 5 5 C 1.53001 * 59.98597 * 107.48012 * 4 2 1 6 6 H 1.09000 * 117.49751 * 107.49514 * 5 4 2 7 7 C 1.52992 * 117.50099 * 252.50108 * 5 4 2 8 8 O 1.45195 * 109.47274 * 243.74501 * 7 5 4 9 9 C 1.34705 * 117.00495 * 180.02562 * 8 7 5 10 10 O 1.21466 * 119.99752 * 359.97438 * 9 8 7 11 11 C 1.47766 * 120.00586 * 179.97438 * 9 8 7 12 12 C 1.39970 * 120.02514 * 0.02562 * 11 9 8 13 13 C 1.38315 * 120.35252 * 179.97438 * 12 11 9 14 14 C 1.37764 * 120.41643 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.05236 * 0.02562 * 14 13 12 16 16 C 1.41445 * 120.17869 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99621 * 335.20149 * 16 15 14 18 18 C 1.39930 * 120.00026 * 155.20543 * 16 15 14 19 19 N 1.30832 * 120.00329 * 342.28799 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 162.28548 * 18 16 15 21 21 H 1.48498 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47070 * 119.99886 * 20 18 16 23 23 H 1.48496 * 109.47162 * 240.00201 * 20 18 16 24 24 C 1.39045 * 120.03528 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.46962 * 205.68644 * 1 2 3 26 26 H 1.08994 * 109.47080 * 325.69634 * 1 2 3 27 27 H 1.08998 * 109.46648 * 85.69108 * 1 2 3 28 28 H 1.09004 * 117.51497 * 0.02562 * 4 2 1 29 29 H 1.09006 * 117.49402 * 214.96772 * 4 2 1 30 30 H 1.09000 * 109.47783 * 123.74004 * 7 5 4 31 31 H 1.09008 * 109.47098 * 3.74379 * 7 5 4 32 32 H 1.07997 * 119.82470 * 359.97438 * 12 11 9 33 33 H 1.07998 * 119.79555 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.97368 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 36 36 H 1.08002 * 120.20356 * 0.29590 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2371 -1.1215 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8750 -1.2685 7 6 1.3590 -2.1562 -1.4713 8 8 2.1986 -3.0638 -2.2326 9 6 1.5766 -4.0419 -2.9190 10 8 0.3661 -4.1343 -2.8822 11 6 2.3670 -5.0024 -3.7166 12 6 3.7621 -4.8968 -3.7590 13 6 4.5085 -5.7925 -4.5030 14 6 3.8883 -6.7989 -5.2103 15 6 2.4864 -6.9211 -5.1800 16 6 1.8468 -7.9538 -5.9047 17 1 2.3304 -8.3871 -6.7678 18 6 0.5877 -8.4138 -5.5036 19 7 0.1521 -8.1590 -4.2966 20 14 -0.4715 -9.3916 -6.6917 21 1 0.2446 -9.5429 -7.9838 22 1 -0.7475 -10.7337 -6.1192 23 1 -1.7531 -8.6761 -6.9164 24 6 1.7257 -6.0126 -4.4249 25 1 -0.3633 -0.9261 0.4454 26 1 -0.3633 0.8489 0.5791 27 1 -0.3632 0.0772 -1.0248 28 1 1.6123 -1.8596 1.2681 29 1 3.1724 -0.8755 1.2681 30 1 0.6687 -1.6485 -2.1450 31 1 0.7936 -2.7202 -0.7294 32 1 4.2583 -4.1117 -3.2078 33 1 5.5844 -5.7024 -4.5296 34 1 4.4782 -7.4946 -5.7886 35 1 -0.7206 -8.4782 -4.0184 36 1 0.6492 -6.0956 -4.3985 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729088390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = -57.545811 kcal Electronic energy + Delta-G solvation = -18482.885311 eV Core-core repulsion = 15511.046604 eV Total energy + Delta-G solvation = -2971.838707 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81524 -38.17853 -37.24218 -35.52233 -33.75387 -30.44948 -29.52322 -28.94837 -27.35889 -25.34612 -23.03928 -21.65016 -20.99562 -19.86234 -19.60934 -17.83137 -16.73622 -16.02732 -15.84594 -15.42417 -14.90141 -14.64486 -13.96216 -13.57266 -13.30380 -13.16181 -13.04596 -12.64247 -12.38072 -12.26294 -11.70835 -11.66232 -11.22034 -11.15744 -11.10879 -10.78185 -10.59920 -10.51331 -10.24622 -10.08858 -9.78409 -9.72848 -9.44832 -9.25466 -7.74956 -7.56385 -6.83769 -4.44702 1.98194 2.76550 3.06370 3.10803 3.12213 3.12678 3.59842 3.67286 3.89747 4.51757 4.57323 4.70188 4.74671 5.10739 5.23191 5.43699 5.52585 5.55460 5.58808 5.66761 5.71638 5.75439 5.86638 6.07801 6.11841 6.17107 6.40191 6.64219 6.92939 6.95270 7.00366 7.16135 7.30427 7.67704 7.74858 7.90108 8.09492 8.43557 8.56920 8.76132 8.78252 10.11756 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.004425 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.271154 B = 6325.666763 C = 7129.472864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.173 4.173 5 C -0.151 4.151 6 H 0.117 0.883 7 C 0.098 3.902 8 O -0.354 6.354 9 C 0.512 3.488 10 O -0.519 6.519 11 C -0.115 4.115 12 C -0.193 4.193 13 C -0.104 4.104 14 C -0.202 4.202 15 C 0.096 3.904 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.787 5.787 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.089 4.089 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.284 0.716 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 10.553 6.019 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 H 0.126 0.874 4 C -0.210 4.210 5 C -0.169 4.169 6 H 0.135 0.865 7 C 0.024 3.976 8 O -0.272 6.272 9 C 0.359 3.641 10 O -0.409 6.409 11 C -0.116 4.116 12 C -0.213 4.213 13 C -0.122 4.122 14 C -0.221 4.221 15 C 0.093 3.907 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.412 5.412 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.108 4.108 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.837 10.495 6.218 12.227 hybrid contribution -0.594 -0.421 -0.284 0.782 sum 0.243 10.073 5.934 11.693 Atomic orbital electron populations 1.21408 0.92759 1.02210 1.02241 1.22422 0.95546 0.94352 1.04034 0.87419 1.23249 1.02627 1.01294 0.93844 1.22218 1.01796 0.98808 0.94044 0.86521 1.22351 0.91750 0.89275 0.94223 1.86571 1.41322 1.40306 1.58976 1.21874 0.86667 0.78932 0.76616 1.90756 1.15563 1.72503 1.62090 1.18839 0.93265 0.97002 1.02525 1.20571 0.92229 1.02609 1.05899 1.20512 0.97608 0.95902 0.98185 1.21191 0.94479 1.00956 1.05520 1.17545 0.90798 0.91523 0.90824 1.19601 1.01156 1.16282 1.11890 0.89893 1.25965 0.97963 0.95622 0.95010 1.69790 1.18849 1.36177 1.16361 0.86221 0.79879 0.79226 0.81222 1.18292 1.19897 1.19566 1.21646 1.00802 0.91538 0.96856 0.92248 0.91985 0.91886 0.88527 0.88506 0.91186 0.91493 0.87853 0.88519 0.88326 0.90474 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.20 37.16 0.34 -0.86 16 2 C -0.15 -1.42 6.41 -90.58 -0.58 -2.00 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.17 -1.79 9.83 -26.70 -0.26 -2.05 16 5 C -0.15 -1.84 6.06 -90.62 -0.55 -2.39 16 6 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.10 1.53 4.84 37.15 0.18 1.71 16 8 O -0.35 -6.89 9.46 -40.51 -0.38 -7.27 16 9 C 0.51 11.77 7.90 34.63 0.27 12.05 16 10 O -0.52 -12.92 16.12 -19.24 -0.31 -13.23 16 11 C -0.11 -2.81 5.87 -105.05 -0.62 -3.43 16 12 C -0.19 -4.31 9.62 -38.90 -0.37 -4.69 16 13 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 14 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 15 C 0.10 2.52 5.57 -106.87 -0.60 1.92 16 16 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 17 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -20.70 10.97 55.55 0.61 -20.10 16 20 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 24 C -0.09 -2.38 8.23 -38.43 -0.32 -2.69 16 25 H 0.06 0.58 7.90 -51.93 -0.41 0.16 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 28 H 0.10 1.01 7.94 -51.93 -0.41 0.59 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 31 H 0.07 1.05 7.87 -51.92 -0.41 0.64 16 32 H 0.10 2.07 7.59 -52.49 -0.40 1.67 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 36 H 0.14 3.84 5.77 -52.49 -0.30 3.54 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -28.54 312.51 -8.94 -37.48 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.83 Total: 5.67 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.71 Total: -20.82 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.10 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.69 Total: -20.50 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.54 -8.94 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729088390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.061 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds