Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.56076 * 2 1 4 4 C 1.53069 * 117.51275 * 145.69772 * 2 1 3 5 5 C 1.53001 * 59.98597 * 107.48012 * 4 2 1 6 6 H 1.09000 * 117.49751 * 107.49514 * 5 4 2 7 7 C 1.52992 * 117.50099 * 252.50108 * 5 4 2 8 8 O 1.45195 * 109.47274 * 243.74501 * 7 5 4 9 9 C 1.34705 * 117.00495 * 180.02562 * 8 7 5 10 10 O 1.21466 * 119.99752 * 359.97438 * 9 8 7 11 11 C 1.47766 * 120.00586 * 179.97438 * 9 8 7 12 12 C 1.39970 * 120.02514 * 0.02562 * 11 9 8 13 13 C 1.38315 * 120.35252 * 179.97438 * 12 11 9 14 14 C 1.37764 * 120.41643 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.05236 * 0.02562 * 14 13 12 16 16 C 1.41445 * 120.17869 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99621 * 335.20149 * 16 15 14 18 18 C 1.39930 * 120.00026 * 155.20543 * 16 15 14 19 19 N 1.30832 * 120.00329 * 342.28799 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 162.28548 * 18 16 15 21 21 H 1.48498 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47070 * 119.99886 * 20 18 16 23 23 H 1.48496 * 109.47162 * 240.00201 * 20 18 16 24 24 C 1.39045 * 120.03528 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.46962 * 205.68644 * 1 2 3 26 26 H 1.08994 * 109.47080 * 325.69634 * 1 2 3 27 27 H 1.08998 * 109.46648 * 85.69108 * 1 2 3 28 28 H 1.09004 * 117.51497 * 0.02562 * 4 2 1 29 29 H 1.09006 * 117.49402 * 214.96772 * 4 2 1 30 30 H 1.09000 * 109.47783 * 123.74004 * 7 5 4 31 31 H 1.09008 * 109.47098 * 3.74379 * 7 5 4 32 32 H 1.07997 * 119.82470 * 359.97438 * 12 11 9 33 33 H 1.07998 * 119.79555 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.97368 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 36 36 H 1.08002 * 120.20356 * 0.29590 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2371 -1.1215 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8750 -1.2685 7 6 1.3590 -2.1562 -1.4713 8 8 2.1986 -3.0638 -2.2326 9 6 1.5766 -4.0419 -2.9190 10 8 0.3661 -4.1343 -2.8822 11 6 2.3670 -5.0024 -3.7166 12 6 3.7621 -4.8968 -3.7590 13 6 4.5085 -5.7925 -4.5030 14 6 3.8883 -6.7989 -5.2103 15 6 2.4864 -6.9211 -5.1800 16 6 1.8468 -7.9538 -5.9047 17 1 2.3304 -8.3871 -6.7678 18 6 0.5877 -8.4138 -5.5036 19 7 0.1521 -8.1590 -4.2966 20 14 -0.4715 -9.3916 -6.6917 21 1 0.2446 -9.5429 -7.9838 22 1 -0.7475 -10.7337 -6.1192 23 1 -1.7531 -8.6761 -6.9164 24 6 1.7257 -6.0126 -4.4249 25 1 -0.3633 -0.9261 0.4454 26 1 -0.3633 0.8489 0.5791 27 1 -0.3632 0.0772 -1.0248 28 1 1.6123 -1.8596 1.2681 29 1 3.1724 -0.8755 1.2681 30 1 0.6687 -1.6485 -2.1450 31 1 0.7936 -2.7202 -0.7294 32 1 4.2583 -4.1117 -3.2078 33 1 5.5844 -5.7024 -4.5296 34 1 4.4782 -7.4946 -5.7886 35 1 -0.7206 -8.4782 -4.0184 36 1 0.6492 -6.0956 -4.3985 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729088390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = -70.574096 kcal Electronic energy + Delta-G solvation = -18483.450260 eV Core-core repulsion = 15511.046604 eV Total energy + Delta-G solvation = -2972.403656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50340 -39.43567 -38.83540 -37.17824 -35.62507 -32.29884 -31.38606 -29.88502 -28.54046 -27.23410 -24.79128 -22.87215 -22.52404 -21.57442 -20.63068 -19.63842 -18.31235 -17.76578 -17.45240 -16.83352 -16.51911 -16.26887 -15.22786 -15.19213 -14.75656 -14.71428 -14.38222 -14.10199 -13.77542 -13.52604 -13.24150 -13.00774 -12.82164 -12.59607 -12.49377 -12.22174 -12.20578 -12.02744 -12.02227 -11.55269 -11.37887 -11.10959 -10.89094 -10.78753 -9.63387 -9.45919 -8.69873 -6.41167 0.10701 0.95055 1.37621 1.44569 1.54046 1.61695 1.77763 2.18753 2.70940 2.75000 3.56262 3.61488 3.74845 3.79014 4.07587 4.13607 4.31991 4.39863 4.43383 4.45404 4.61836 4.80219 4.85174 4.87965 4.92907 5.03375 5.09821 5.12803 5.16166 5.26856 5.32667 5.37237 5.43572 5.80500 5.87960 5.99777 6.21517 6.51770 6.78611 6.85285 6.87655 8.28102 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.004425 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.271154 B = 6325.666763 C = 7129.472864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 H 0.131 0.869 4 C -0.169 4.169 5 C -0.170 4.170 6 H 0.121 0.879 7 C 0.094 3.906 8 O -0.348 6.348 9 C 0.514 3.486 10 O -0.548 6.548 11 C -0.130 4.130 12 C -0.181 4.181 13 C -0.098 4.098 14 C -0.203 4.203 15 C 0.066 3.934 16 C -0.494 4.494 17 H 0.088 0.912 18 C 0.030 3.970 19 N -0.828 5.828 20 Si 0.985 3.015 21 H -0.250 1.250 22 H -0.264 1.264 23 H -0.270 1.270 24 C -0.123 4.123 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.288 0.712 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 11.695 6.380 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 H 0.149 0.851 4 C -0.205 4.205 5 C -0.188 4.188 6 H 0.139 0.861 7 C 0.020 3.980 8 O -0.265 6.265 9 C 0.362 3.638 10 O -0.440 6.440 11 C -0.131 4.131 12 C -0.201 4.201 13 C -0.116 4.116 14 C -0.223 4.223 15 C 0.064 3.936 16 C -0.523 4.523 17 H 0.107 0.893 18 C -0.185 4.185 19 N -0.453 5.453 20 Si 0.805 3.195 21 H -0.173 1.173 22 H -0.189 1.189 23 H -0.195 1.195 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.394 11.656 6.591 13.603 hybrid contribution -0.954 -0.635 -0.292 1.183 sum 1.440 11.022 6.298 12.776 Atomic orbital electron populations 1.21472 0.92706 1.02725 1.02197 1.22575 0.95633 0.94708 1.01576 0.85114 1.23359 1.03528 1.01358 0.92282 1.22180 1.02046 0.99484 0.95115 0.86078 1.22662 0.92375 0.89137 0.93794 1.86537 1.41613 1.39753 1.58549 1.21729 0.86121 0.79353 0.76551 1.90732 1.16762 1.73397 1.63155 1.19094 0.94657 0.96912 1.02448 1.20961 0.91196 1.02875 1.05025 1.20970 0.99853 0.94342 0.96413 1.21522 0.93608 1.01708 1.05439 1.17903 0.92321 0.91891 0.91465 1.19900 1.02576 1.17170 1.12652 0.89345 1.26874 0.98839 0.96418 0.96351 1.69881 1.19438 1.37737 1.18291 0.85119 0.77658 0.77743 0.78995 1.17308 1.18900 1.19548 1.21455 0.99646 0.93627 0.99575 0.93130 0.89907 0.92486 0.88968 0.86641 0.91393 0.92038 0.84999 0.83993 0.86526 0.90163 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.20 71.98 0.66 -1.60 16 2 C -0.13 -2.15 6.41 -10.77 -0.07 -2.22 16 3 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.17 -3.09 9.83 30.62 0.30 -2.79 16 5 C -0.17 -3.86 6.06 -10.80 -0.07 -3.92 16 6 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 7 C 0.09 2.90 4.84 71.98 0.35 3.25 16 8 O -0.35 -13.40 9.46 -56.15 -0.53 -13.93 16 9 C 0.51 24.16 7.90 70.34 0.56 24.71 16 10 O -0.55 -28.45 16.12 19.95 0.32 -28.13 16 11 C -0.13 -6.44 5.87 -20.14 -0.12 -6.56 16 12 C -0.18 -7.74 9.62 22.71 0.22 -7.52 16 13 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 14 C -0.20 -9.42 9.78 22.77 0.22 -9.20 16 15 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 16 C -0.49 -26.43 9.05 23.47 0.21 -26.22 16 17 H 0.09 4.44 7.91 -2.91 -0.02 4.41 16 18 C 0.03 1.54 5.14 85.25 0.44 1.98 16 19 N -0.83 -45.57 10.97 21.82 0.24 -45.33 16 20 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 C -0.12 -6.86 8.23 23.02 0.19 -6.67 16 25 H 0.05 0.94 7.90 -2.39 -0.02 0.92 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.04 7.84 -2.39 -0.02 1.02 16 28 H 0.09 1.78 7.94 -2.39 -0.02 1.76 16 29 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 2.10 7.77 -2.39 -0.02 2.09 16 31 H 0.06 1.95 7.87 -2.38 -0.02 1.93 16 32 H 0.13 4.85 7.59 -2.91 -0.02 4.83 16 33 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 14.50 8.30 -92.71 -0.77 13.74 16 36 H 0.10 6.37 5.77 -2.91 -0.02 6.36 16 Total: -1.00 -64.02 312.51 6.13 -57.89 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.07 Total: 25.64 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.00 Total: -37.06 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.24 Total: -45.33 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.21 Total: -42.07 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -64.02 6.13 -57.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729088390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.681 kcal (2) G-P(sol) polarization free energy of solvation -64.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds