Wall clock time and date at job start Mon Mar 30 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99701 * 2 1 4 4 C 1.50699 * 119.99676 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47213 * 354.99692 * 4 2 1 6 6 C 1.52999 * 109.47198 * 114.99691 * 4 2 1 7 7 O 1.45207 * 109.46645 * 234.99534 * 4 2 1 8 8 C 1.34705 * 116.99369 * 150.00137 * 7 4 2 9 9 O 1.21459 * 120.00718 * 359.97438 * 8 7 4 10 10 C 1.47777 * 119.99613 * 179.97438 * 8 7 4 11 11 C 1.39965 * 120.02779 * 359.72562 * 10 8 7 12 12 C 1.38314 * 120.35231 * 179.76433 * 11 10 8 13 13 C 1.37767 * 120.41681 * 0.51432 * 12 11 10 14 14 C 1.40755 * 120.04962 * 359.73829 * 13 12 11 15 15 C 1.41431 * 120.17561 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00166 * 24.44442 * 15 14 13 17 17 C 1.39933 * 120.00335 * 204.44381 * 15 14 13 18 18 N 1.30825 * 120.00013 * 17.88454 * 17 15 14 19 19 Si 1.86803 * 120.00416 * 197.88388 * 17 15 14 20 20 H 1.48504 * 109.47183 * 89.99787 * 19 17 15 21 21 H 1.48501 * 109.47295 * 209.99968 * 19 17 15 22 22 H 1.48499 * 109.46829 * 330.00035 * 19 17 15 23 23 C 1.39044 * 120.02968 * 180.02562 * 10 8 7 24 24 H 1.07998 * 120.00274 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00388 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47186 * 269.99659 * 3 2 1 27 27 H 1.08994 * 109.47535 * 30.00168 * 3 2 1 28 28 H 1.09007 * 109.46778 * 150.00661 * 3 2 1 29 29 H 1.09000 * 109.47174 * 179.97438 * 6 4 2 30 30 H 1.09000 * 109.47037 * 59.99893 * 6 4 2 31 31 H 1.08998 * 109.47228 * 299.99652 * 6 4 2 32 32 H 1.07999 * 119.82508 * 359.97438 * 11 10 8 33 33 H 1.08003 * 119.79331 * 180.25743 * 12 11 10 34 34 H 1.07999 * 119.97244 * 179.76787 * 13 12 11 35 35 H 0.96994 * 120.00579 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.21186 * 359.95667 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1317 0.0887 6 6 2.8463 -1.4415 -1.3080 7 8 2.9855 -1.3321 1.1208 8 6 3.2659 -2.5374 1.6530 9 8 2.7540 -3.5383 1.1933 10 6 4.1965 -2.6418 2.7961 11 6 4.7913 -1.4894 3.3227 12 6 5.6595 -1.5789 4.3956 13 6 5.9572 -2.8036 4.9518 14 6 5.3730 -3.9742 4.4325 15 6 5.6763 -5.2329 5.0017 16 1 6.0103 -5.2956 6.0269 17 6 5.5437 -6.3971 4.2367 18 7 5.4857 -6.3194 2.9321 19 14 5.4495 -8.0622 5.0782 20 1 4.0308 -8.3898 5.3700 21 1 6.0240 -9.1010 4.1860 22 1 6.2188 -8.0194 6.3477 23 6 4.4869 -3.8856 3.3456 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 2.2451 1.6198 -1.0277 27 1 1.4744 2.0647 0.5138 28 1 3.0159 1.1747 0.5138 29 1 3.3916 -2.3853 -1.3082 30 1 3.5513 -0.6150 -1.3973 31 1 2.1541 -1.4212 -2.1498 32 1 4.5685 -0.5248 2.8910 33 1 6.1102 -0.6833 4.7974 34 1 6.6390 -2.8656 5.7870 35 1 5.3934 -7.1262 2.4017 36 1 4.0337 -4.7781 2.9401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755991609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:39 Heat of formation + Delta-G solvation = -63.514453 kcal Electronic energy + Delta-G solvation = -18839.798446 eV Core-core repulsion = 15867.700919 eV Total energy + Delta-G solvation = -2972.097527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91752 -37.60438 -36.55206 -34.79352 -33.75091 -30.71092 -29.90799 -29.48752 -27.38560 -25.43884 -24.27329 -22.38468 -20.99247 -19.72436 -18.65725 -17.85634 -16.53024 -16.01428 -15.43323 -15.14600 -14.76769 -14.32909 -14.04390 -13.62615 -13.23459 -13.18348 -12.83224 -12.58197 -12.49148 -12.28005 -11.75844 -11.67286 -11.53239 -11.21507 -11.13328 -10.76352 -10.69537 -10.52694 -10.26739 -10.13972 -9.73527 -9.49514 -9.25598 -9.19722 -7.75200 -7.56801 -6.84074 -4.45048 1.96029 2.02194 2.77160 3.05868 3.09120 3.12953 3.38852 3.60867 3.89307 4.56513 4.66671 4.88987 5.17803 5.31892 5.45619 5.52126 5.53651 5.63902 5.75678 5.90876 5.93106 6.00289 6.13190 6.16523 6.39966 6.48907 6.62437 6.75299 6.93025 6.95917 7.02434 7.16116 7.30359 7.67588 7.74796 7.90008 8.09409 8.43244 8.57512 8.75930 8.78001 10.11317 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.005003 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.530049 B = 5595.314379 C = 6243.831882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 C -0.117 4.117 4 C 0.117 3.883 5 H 0.086 0.914 6 C -0.164 4.164 7 O -0.347 6.347 8 C 0.512 3.488 9 O -0.519 6.519 10 C -0.115 4.115 11 C -0.193 4.193 12 C -0.104 4.104 13 C -0.202 4.202 14 C 0.096 3.904 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.090 4.090 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.285 0.715 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 8.619 -5.143 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.116 4.116 3 C -0.174 4.174 4 C 0.062 3.938 5 H 0.104 0.896 6 C -0.221 4.221 7 O -0.264 6.264 8 C 0.359 3.641 9 O -0.408 6.408 10 C -0.116 4.116 11 C -0.213 4.213 12 C -0.122 4.122 13 C -0.222 4.222 14 C 0.093 3.907 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.411 5.411 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.109 4.109 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.500 8.178 -5.531 11.301 hybrid contribution -0.109 -0.862 0.105 0.875 sum -5.609 7.316 -5.426 10.697 Atomic orbital electron populations 1.23756 0.94878 1.02246 1.01296 1.21609 0.94952 0.95139 0.99916 1.20808 1.01086 0.93628 1.01848 1.21540 0.91041 0.95855 0.85346 0.89597 1.22139 1.00887 1.03223 0.95850 1.86671 1.59988 1.34008 1.45773 1.21896 0.79517 0.80390 0.82309 1.90742 1.51136 1.37285 1.61666 1.18844 1.00700 0.95909 0.96139 1.20559 1.04018 0.96011 1.00715 1.20511 0.98489 0.96561 0.96645 1.21188 1.04188 0.92757 1.04056 1.17540 0.89325 0.92884 0.90933 1.19583 1.39899 0.90145 0.99329 0.89914 1.25963 0.92224 1.01819 0.94536 1.69776 1.33786 1.31829 1.05758 0.86255 0.79620 0.80426 0.80141 1.19135 1.20210 1.18516 1.21665 0.97117 0.94840 0.97321 0.88289 0.87717 0.91577 0.91872 0.90720 0.91488 0.91509 0.91151 0.87896 0.88540 0.88345 0.90415 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 13.91 29.01 0.40 -1.67 16 2 C -0.12 -1.50 5.10 -101.07 -0.52 -2.01 16 3 C -0.12 -1.30 9.62 36.00 0.35 -0.95 16 4 C 0.12 1.85 2.78 -27.88 -0.08 1.77 16 5 H 0.09 1.45 6.81 -51.93 -0.35 1.09 16 6 C -0.16 -2.26 9.44 37.16 0.35 -1.91 16 7 O -0.35 -6.68 8.66 -40.50 -0.35 -7.03 16 8 C 0.51 11.68 7.87 34.63 0.27 11.95 16 9 O -0.52 -12.78 15.59 -19.23 -0.30 -13.08 16 10 C -0.11 -2.79 5.87 -105.05 -0.62 -3.41 16 11 C -0.19 -4.29 9.62 -38.91 -0.37 -4.67 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 13 C -0.20 -4.78 9.78 -38.80 -0.38 -5.16 16 14 C 0.10 2.52 5.57 -106.87 -0.60 1.92 16 15 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 16 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 17 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 18 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 19 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.09 -2.40 8.24 -38.43 -0.32 -2.72 16 24 H 0.10 1.08 7.84 -52.49 -0.41 0.67 16 25 H 0.10 0.95 8.04 -52.48 -0.42 0.53 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 28 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.05 7.59 -52.49 -0.40 1.65 16 33 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 36 H 0.14 3.85 5.74 -52.49 -0.30 3.55 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -28.39 314.56 -7.44 -35.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.78 Total: 6.09 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.33 Total: -20.08 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.65 Total: -20.11 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.39 -7.44 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755991609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.681 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds