Wall clock time and date at job start Mon Mar 30 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99701 * 2 1 4 4 C 1.50699 * 119.99676 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47213 * 354.99692 * 4 2 1 6 6 C 1.52999 * 109.47198 * 114.99691 * 4 2 1 7 7 O 1.45207 * 109.46645 * 234.99534 * 4 2 1 8 8 C 1.34705 * 116.99369 * 150.00137 * 7 4 2 9 9 O 1.21459 * 120.00718 * 359.97438 * 8 7 4 10 10 C 1.47777 * 119.99613 * 179.97438 * 8 7 4 11 11 C 1.39965 * 120.02779 * 359.72562 * 10 8 7 12 12 C 1.38314 * 120.35231 * 179.76433 * 11 10 8 13 13 C 1.37767 * 120.41681 * 0.51432 * 12 11 10 14 14 C 1.40755 * 120.04962 * 359.73829 * 13 12 11 15 15 C 1.41431 * 120.17561 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00166 * 24.44442 * 15 14 13 17 17 C 1.39933 * 120.00335 * 204.44381 * 15 14 13 18 18 N 1.30825 * 120.00013 * 17.88454 * 17 15 14 19 19 Si 1.86803 * 120.00416 * 197.88388 * 17 15 14 20 20 H 1.48504 * 109.47183 * 89.99787 * 19 17 15 21 21 H 1.48501 * 109.47295 * 209.99968 * 19 17 15 22 22 H 1.48499 * 109.46829 * 330.00035 * 19 17 15 23 23 C 1.39044 * 120.02968 * 180.02562 * 10 8 7 24 24 H 1.07998 * 120.00274 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00388 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47186 * 269.99659 * 3 2 1 27 27 H 1.08994 * 109.47535 * 30.00168 * 3 2 1 28 28 H 1.09007 * 109.46778 * 150.00661 * 3 2 1 29 29 H 1.09000 * 109.47174 * 179.97438 * 6 4 2 30 30 H 1.09000 * 109.47037 * 59.99893 * 6 4 2 31 31 H 1.08998 * 109.47228 * 299.99652 * 6 4 2 32 32 H 1.07999 * 119.82508 * 359.97438 * 11 10 8 33 33 H 1.08003 * 119.79331 * 180.25743 * 12 11 10 34 34 H 1.07999 * 119.97244 * 179.76787 * 13 12 11 35 35 H 0.96994 * 120.00579 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.21186 * 359.95667 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1317 0.0887 6 6 2.8463 -1.4415 -1.3080 7 8 2.9855 -1.3321 1.1208 8 6 3.2659 -2.5374 1.6530 9 8 2.7540 -3.5383 1.1933 10 6 4.1965 -2.6418 2.7961 11 6 4.7913 -1.4894 3.3227 12 6 5.6595 -1.5789 4.3956 13 6 5.9572 -2.8036 4.9518 14 6 5.3730 -3.9742 4.4325 15 6 5.6763 -5.2329 5.0017 16 1 6.0103 -5.2956 6.0269 17 6 5.5437 -6.3971 4.2367 18 7 5.4857 -6.3194 2.9321 19 14 5.4495 -8.0622 5.0782 20 1 4.0308 -8.3898 5.3700 21 1 6.0240 -9.1010 4.1860 22 1 6.2188 -8.0194 6.3477 23 6 4.4869 -3.8856 3.3456 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 2.2451 1.6198 -1.0277 27 1 1.4744 2.0647 0.5138 28 1 3.0159 1.1747 0.5138 29 1 3.3916 -2.3853 -1.3082 30 1 3.5513 -0.6150 -1.3973 31 1 2.1541 -1.4212 -2.1498 32 1 4.5685 -0.5248 2.8910 33 1 6.1102 -0.6833 4.7974 34 1 6.6390 -2.8656 5.7870 35 1 5.3934 -7.1262 2.4017 36 1 4.0337 -4.7781 2.9401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755991609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:38 Heat of formation + Delta-G solvation = -76.900977 kcal Electronic energy + Delta-G solvation = -18840.378929 eV Core-core repulsion = 15867.700919 eV Total energy + Delta-G solvation = -2972.678010 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58204 -39.33739 -38.08636 -36.15005 -35.60339 -32.34862 -31.43854 -31.20088 -28.24423 -27.33377 -25.81057 -23.87297 -22.85595 -21.45079 -19.83485 -19.61055 -18.20222 -17.69482 -17.04210 -16.74467 -16.49923 -15.80407 -15.36912 -15.07299 -14.89971 -14.47474 -14.26014 -14.08805 -13.78413 -13.52368 -13.41263 -13.00218 -12.84780 -12.82869 -12.57726 -12.56173 -12.22200 -12.05444 -11.87150 -11.62574 -11.54744 -11.26618 -11.11160 -10.15033 -9.63336 -9.46087 -8.70060 -6.41409 0.11896 0.95183 0.97442 1.37008 1.45898 1.51525 1.78763 1.92373 2.18281 2.71015 3.57149 3.61628 3.82202 3.85197 4.08625 4.28232 4.40515 4.59555 4.61679 4.67618 4.71862 4.84599 4.89038 4.94565 5.04032 5.05823 5.12188 5.16602 5.26599 5.33366 5.43717 5.56561 5.79904 5.82456 5.88449 5.99837 6.21607 6.51689 6.80549 6.85617 6.87936 8.27593 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.005003 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.530049 B = 5595.314379 C = 6243.831882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.113 4.113 4 C 0.107 3.893 5 H 0.068 0.932 6 C -0.159 4.159 7 O -0.340 6.340 8 C 0.514 3.486 9 O -0.548 6.548 10 C -0.129 4.129 11 C -0.181 4.181 12 C -0.098 4.098 13 C -0.204 4.204 14 C 0.066 3.934 15 C -0.495 4.495 16 H 0.089 0.911 17 C 0.030 3.970 18 N -0.827 5.827 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.249 1.249 23 C -0.125 4.125 24 H 0.096 0.904 25 H 0.134 0.866 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.288 0.712 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 10.743 -4.924 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.169 4.169 4 C 0.053 3.947 5 H 0.086 0.914 6 C -0.216 4.216 7 O -0.257 6.257 8 C 0.362 3.638 9 O -0.440 6.440 10 C -0.130 4.130 11 C -0.200 4.200 12 C -0.116 4.116 13 C -0.223 4.223 14 C 0.064 3.936 15 C -0.524 4.524 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.453 5.453 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.172 1.172 23 C -0.145 4.145 24 H 0.114 0.886 25 H 0.152 0.848 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.770 10.342 -5.313 12.980 hybrid contribution -0.097 -1.325 -0.030 1.329 sum -5.867 9.017 -5.343 12.012 Atomic orbital electron populations 1.24025 0.94344 1.03540 0.98401 1.21600 0.95436 0.94274 1.02506 1.20810 1.00205 0.92893 1.03040 1.21931 0.90571 0.97397 0.84806 0.91366 1.22130 1.01381 1.02269 0.95835 1.86629 1.60556 1.31707 1.46853 1.21723 0.79012 0.81017 0.82010 1.90717 1.52198 1.38544 1.62530 1.19108 1.01211 0.96030 0.96695 1.20946 1.02648 0.96252 1.00183 1.20969 0.97490 0.97421 0.95708 1.21514 1.03820 0.92771 1.04240 1.17899 0.89908 0.94310 0.91458 1.19886 1.41560 0.91062 0.99850 0.89342 1.26871 0.91163 1.05545 0.94873 1.69871 1.35127 1.32931 1.07357 0.85163 0.79555 0.75457 0.79347 1.19088 1.19440 1.17230 1.21475 0.98990 0.94900 0.99117 0.88552 0.84831 0.89836 0.90193 0.92356 0.94104 0.90194 0.88385 0.85052 0.84022 0.86566 0.90156 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 13.91 67.78 0.94 -2.33 16 2 C -0.14 -3.27 5.10 -16.49 -0.08 -3.35 16 3 C -0.11 -2.17 9.62 71.23 0.69 -1.48 16 4 C 0.11 3.34 2.78 29.85 0.08 3.42 16 5 H 0.07 2.35 6.81 -2.39 -0.02 2.33 16 6 C -0.16 -4.29 9.44 71.98 0.68 -3.61 16 7 O -0.34 -13.05 8.66 -56.14 -0.49 -13.54 16 8 C 0.51 24.13 7.87 70.35 0.55 24.68 16 9 O -0.55 -28.40 15.59 19.97 0.31 -28.09 16 10 C -0.13 -6.41 5.87 -20.14 -0.12 -6.53 16 11 C -0.18 -7.73 9.62 22.71 0.22 -7.51 16 12 C -0.10 -3.99 10.01 22.18 0.22 -3.77 16 13 C -0.20 -9.47 9.78 22.77 0.22 -9.25 16 14 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 15 C -0.49 -26.52 9.05 23.47 0.21 -26.31 16 16 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 17 C 0.03 1.57 5.14 85.25 0.44 2.01 16 18 N -0.83 -45.62 10.95 21.82 0.24 -45.38 16 19 Si 0.98 38.97 29.60 68.60 2.03 41.00 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 23 C -0.13 -6.98 8.24 23.02 0.19 -6.79 16 24 H 0.10 1.94 7.84 -2.91 -0.02 1.91 16 25 H 0.13 1.88 8.04 -2.91 -0.02 1.86 16 26 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 28 H 0.06 1.30 7.73 -2.38 -0.02 1.29 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.92 7.90 -2.39 -0.02 1.90 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 33 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 36 H 0.10 6.41 5.74 -2.91 -0.02 6.40 16 Total: -1.00 -64.54 314.56 7.29 -57.25 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.07 Total: 26.11 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 4.13 Total: -37.35 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.24 Total: -45.38 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.18 Total: -41.63 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -64.54 7.29 -57.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755991609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.650 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds