Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47238 * 2 1 4 4 C 1.50697 * 109.47179 * 239.99693 * 2 1 3 5 5 H 1.08004 * 119.99981 * 240.00177 * 4 2 1 6 6 C 1.37874 * 119.99932 * 60.00194 * 4 2 1 7 7 N 1.31518 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47033 * 89.99915 * 8 6 4 10 10 H 1.48500 * 109.47232 * 209.99735 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00212 * 8 6 4 12 12 O 1.45204 * 109.47153 * 119.99854 * 2 1 3 13 13 C 1.34229 * 116.99843 * 270.00622 * 12 2 1 14 14 O 1.20827 * 120.00012 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00138 * 180.02562 * 13 12 2 16 16 C 1.54346 * 110.81646 * 292.96253 * 15 13 12 17 17 C 1.51372 * 105.17298 * 215.42458 * 16 15 13 18 18 C 1.38492 * 130.39683 * 197.19163 * 17 16 15 19 19 C 1.38103 * 120.21882 * 180.02562 * 18 17 16 20 20 C 1.38252 * 119.93356 * 0.02562 * 19 18 17 21 21 C 1.38111 * 119.93394 * 359.97438 * 20 19 18 22 22 C 1.38222 * 109.75348 * 17.18912 * 17 16 15 23 23 C 1.51364 * 109.76063 * 0.02562 * 22 17 16 24 24 H 1.09000 * 109.47305 * 60.00162 * 1 2 3 25 25 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47261 * 299.99892 * 1 2 3 27 27 H 0.97002 * 120.00067 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.88511 * 56.47153 * 15 13 12 29 29 H 1.09002 * 110.30762 * 334.34934 * 16 15 13 30 30 H 1.09005 * 110.30568 * 96.50821 * 16 15 13 31 31 H 1.08003 * 119.88682 * 0.02562 * 18 17 16 32 32 H 1.07996 * 120.03367 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.03241 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.88926 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.30479 * 223.88671 * 23 22 17 36 36 H 1.08996 * 110.38833 * 101.77359 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9980 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 6 1.6597 -1.5328 4.1375 17 6 1.7976 -1.4012 5.6392 18 6 1.3470 -2.2247 6.6575 19 6 1.5935 -1.8976 7.9764 20 6 2.2919 -0.7443 8.2822 21 6 2.7421 0.0782 7.2682 22 6 2.4968 -0.2487 5.9449 23 6 2.8760 0.4732 4.6697 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1612 -3.4844 28 1 3.6589 -1.1006 3.3742 29 1 0.6611 -1.2312 3.8216 30 1 1.8618 -2.5582 3.8277 31 1 0.8010 -3.1256 6.4193 32 1 1.2404 -2.5417 8.7681 33 1 2.4852 -0.4868 9.3131 34 1 3.2879 0.9787 7.5079 35 1 3.9088 0.8175 4.7228 36 1 2.2058 1.3151 4.4963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763975314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = -75.019951 kcal Electronic energy + Delta-G solvation = -18782.836346 eV Core-core repulsion = 15810.239904 eV Total energy + Delta-G solvation = -2972.596442 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48955 -39.18024 -36.12861 -35.15753 -33.26098 -31.48119 -29.95800 -29.05770 -27.30192 -25.33516 -24.08128 -21.83319 -21.04065 -20.77949 -19.26841 -17.22847 -16.64813 -16.30667 -15.81359 -15.47327 -15.08765 -14.59356 -14.51797 -13.62943 -13.32303 -13.12644 -12.86758 -12.75457 -12.47523 -12.13659 -11.79989 -11.34395 -11.27965 -11.13808 -11.05944 -11.04362 -10.85326 -10.81971 -10.39612 -10.28631 -9.63831 -9.53118 -8.92058 -8.87842 -8.54977 -8.50226 -6.19321 -4.26380 1.28045 1.31410 2.93654 3.24190 3.29420 3.33051 3.58647 3.68674 4.30493 4.31890 4.60950 4.91504 4.93282 5.00177 5.13272 5.15709 5.21214 5.43557 5.55421 5.71182 5.74504 5.79753 5.90058 6.03001 6.10361 6.20848 6.36736 6.41453 6.60554 6.62951 6.87248 6.90068 6.92394 7.15706 7.58845 7.71449 7.92404 8.12947 8.61874 8.87215 9.39208 10.88120 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.047859 B = 0.003934 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.913822 B = 7115.736549 C = 7268.116231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.461 3.539 14 O -0.519 6.519 15 C -0.085 4.085 16 C -0.069 4.069 17 C -0.093 4.093 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.073 4.073 24 H 0.099 0.901 25 H 0.037 0.963 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -4.600 17.851 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.304 3.696 14 O -0.409 6.409 15 C -0.104 4.104 16 C -0.106 4.106 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.090 4.090 23 C -0.110 4.110 24 H 0.118 0.882 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.985 -4.131 17.625 18.211 hybrid contribution 0.180 -0.272 -0.840 0.901 sum 2.166 -4.402 16.784 17.487 Atomic orbital electron populations 1.22162 0.97556 1.00109 1.01408 1.20654 0.91408 0.93943 0.77824 0.93550 1.21031 1.32513 1.13478 0.88895 0.91284 1.24893 0.94939 0.95085 0.99087 1.69902 1.36086 1.22546 1.24184 0.86267 0.79311 0.79127 0.81394 1.20346 1.20970 1.19607 1.86488 1.75580 1.43572 1.21250 1.22981 0.74847 0.85845 0.85938 1.90591 1.48778 1.16920 1.84592 1.21624 1.00831 0.97301 0.90666 1.20934 0.99373 1.00373 0.89895 1.20600 0.98073 0.95389 0.95283 1.20625 1.00316 0.99483 0.91929 1.21008 0.99725 0.97467 0.96019 1.21012 0.99067 0.95161 0.98843 1.20611 1.00726 0.99935 0.91295 1.20615 0.98238 0.95858 0.94316 1.21018 1.03268 0.97848 0.88828 0.88227 0.94413 0.96564 0.92391 0.86823 0.89456 0.89237 0.86114 0.86018 0.86037 0.86187 0.89990 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.33 37.16 0.35 -3.58 16 2 C 0.21 5.76 2.56 -27.89 -0.07 5.69 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.64 8.90 -34.44 -0.31 -14.95 16 5 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.91 21.05 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.35 -8.34 9.86 -39.25 -0.39 -8.72 16 13 C 0.46 9.53 7.14 36.01 0.26 9.79 16 14 O -0.52 -12.11 14.72 -18.75 -0.28 -12.38 16 15 C -0.08 -1.29 3.58 -90.35 -0.32 -1.62 16 16 C -0.07 -0.94 6.31 -26.85 -0.17 -1.11 16 17 C -0.09 -1.20 6.14 -104.20 -0.64 -1.84 16 18 C -0.11 -1.17 10.04 -39.54 -0.40 -1.56 16 19 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 20 C -0.12 -1.21 10.05 -39.62 -0.40 -1.61 16 21 C -0.11 -1.19 10.04 -39.53 -0.40 -1.59 16 22 C -0.09 -1.16 6.14 -104.21 -0.64 -1.80 16 23 C -0.07 -1.01 6.10 -26.84 -0.16 -1.17 16 24 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.57 6.99 -51.93 -0.36 1.20 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -30.73 305.59 -8.66 -39.38 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.81 Total: 1.11 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.39 Total: -15.34 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.67 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.66 Total: -21.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.73 -8.66 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763975314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.639 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds