Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47238 * 2 1 4 4 C 1.50697 * 109.47179 * 239.99693 * 2 1 3 5 5 H 1.08004 * 119.99981 * 240.00177 * 4 2 1 6 6 C 1.37874 * 119.99932 * 60.00194 * 4 2 1 7 7 N 1.31518 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47033 * 89.99915 * 8 6 4 10 10 H 1.48500 * 109.47232 * 209.99735 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00212 * 8 6 4 12 12 O 1.45204 * 109.47153 * 119.99854 * 2 1 3 13 13 C 1.34229 * 116.99843 * 270.00622 * 12 2 1 14 14 O 1.20827 * 120.00012 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00138 * 180.02562 * 13 12 2 16 16 C 1.54346 * 110.81646 * 292.96253 * 15 13 12 17 17 C 1.51372 * 105.17298 * 215.42458 * 16 15 13 18 18 C 1.38492 * 130.39683 * 197.19163 * 17 16 15 19 19 C 1.38103 * 120.21882 * 180.02562 * 18 17 16 20 20 C 1.38252 * 119.93356 * 0.02562 * 19 18 17 21 21 C 1.38111 * 119.93394 * 359.97438 * 20 19 18 22 22 C 1.38222 * 109.75348 * 17.18912 * 17 16 15 23 23 C 1.51364 * 109.76063 * 0.02562 * 22 17 16 24 24 H 1.09000 * 109.47305 * 60.00162 * 1 2 3 25 25 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47261 * 299.99892 * 1 2 3 27 27 H 0.97002 * 120.00067 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.88511 * 56.47153 * 15 13 12 29 29 H 1.09002 * 110.30762 * 334.34934 * 16 15 13 30 30 H 1.09005 * 110.30568 * 96.50821 * 16 15 13 31 31 H 1.08003 * 119.88682 * 0.02562 * 18 17 16 32 32 H 1.07996 * 120.03367 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.03241 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.88926 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.30479 * 223.88671 * 23 22 17 36 36 H 1.08996 * 110.38833 * 101.77359 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0641 2.2812 14 8 1.9980 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 6 1.6597 -1.5328 4.1375 17 6 1.7976 -1.4012 5.6392 18 6 1.3470 -2.2247 6.6575 19 6 1.5935 -1.8976 7.9764 20 6 2.2919 -0.7443 8.2822 21 6 2.7421 0.0782 7.2682 22 6 2.4968 -0.2487 5.9449 23 6 2.8760 0.4732 4.6697 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1612 -3.4844 28 1 3.6589 -1.1006 3.3742 29 1 0.6611 -1.2312 3.8216 30 1 1.8618 -2.5582 3.8277 31 1 0.8010 -3.1256 6.4193 32 1 1.2404 -2.5417 8.7681 33 1 2.4852 -0.4868 9.3131 34 1 3.2879 0.9787 7.5079 35 1 3.9088 0.8175 4.7228 36 1 2.2058 1.3151 4.4963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763975314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = -90.324407 kcal Electronic energy + Delta-G solvation = -18783.499997 eV Core-core repulsion = 15810.239904 eV Total energy + Delta-G solvation = -2973.260093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81401 -40.55444 -37.79442 -36.42429 -35.33675 -32.35422 -31.82788 -30.32208 -28.30088 -27.47419 -25.43578 -23.24429 -22.29343 -21.81718 -20.90810 -18.91168 -18.61155 -17.54000 -17.12862 -16.97588 -16.37467 -16.22875 -15.72792 -15.12992 -14.45887 -14.34988 -14.19275 -13.94418 -13.88595 -13.71778 -13.38423 -13.20464 -12.93792 -12.79725 -12.42392 -12.31752 -12.21378 -12.17803 -12.10826 -11.67855 -11.60536 -11.33126 -11.01530 -10.60974 -9.70778 -9.44442 -8.29897 -6.47130 0.42812 0.48869 1.25827 1.41846 1.44102 1.55241 1.94193 2.40268 2.84458 3.00820 3.24412 3.49546 3.86902 3.99237 4.05085 4.17752 4.24231 4.30601 4.51976 4.63379 4.63846 4.68422 4.75362 4.79752 4.84305 4.85719 4.99202 5.14421 5.14914 5.22721 5.47099 5.55521 5.60712 5.62838 5.72323 5.89684 6.06089 6.12196 6.58017 6.92446 7.24864 8.77925 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.047859 B = 0.003934 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.913822 B = 7115.736549 C = 7268.116231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.358 6.358 13 C 0.457 3.543 14 O -0.550 6.550 15 C -0.078 4.078 16 C -0.065 4.065 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.271 0.729 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -6.305 19.340 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.274 6.274 13 C 0.302 3.698 14 O -0.442 6.442 15 C -0.097 4.097 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.105 4.105 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.840 19.141 20.176 hybrid contribution -0.009 0.308 -1.178 1.218 sum 2.554 -5.532 17.963 18.968 Atomic orbital electron populations 1.21983 0.96766 1.00453 1.00751 1.20369 0.92046 0.92100 0.79251 0.97506 1.21306 1.33481 1.13952 0.89899 0.91297 1.25856 0.94694 0.95646 1.02216 1.70023 1.36608 1.23678 1.25258 0.85157 0.79053 0.78082 0.76969 1.19142 1.20326 1.18867 1.86482 1.75956 1.43625 1.21363 1.24084 0.73672 0.85608 0.86432 1.90571 1.50096 1.18485 1.85038 1.21748 1.01985 0.98109 0.87893 1.20876 0.97789 1.00481 0.91029 1.20577 0.99410 0.96289 0.94753 1.20903 1.00199 0.99807 0.92143 1.21413 0.98704 0.97677 0.96176 1.21411 0.97898 0.94596 0.99954 1.20888 1.00810 1.00832 0.90770 1.20583 0.99602 0.96121 0.94546 1.20933 1.03608 0.96791 0.89189 0.90050 0.93406 0.95952 0.91969 0.84608 0.91121 0.87803 0.84502 0.83106 0.83131 0.84672 0.88609 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 2 C 0.22 12.02 2.56 29.85 0.08 12.10 16 3 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 4 C -0.55 -31.38 8.90 25.60 0.23 -31.16 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.98 42.90 29.54 68.60 2.03 44.92 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 O -0.36 -17.40 9.86 -51.41 -0.51 -17.91 16 13 C 0.46 19.52 7.14 71.24 0.51 20.03 16 14 O -0.55 -26.96 14.72 21.96 0.32 -26.64 16 15 C -0.08 -2.39 3.58 -10.62 -0.04 -2.43 16 16 C -0.06 -1.74 6.31 30.52 0.19 -1.55 16 17 C -0.11 -2.69 6.14 -19.59 -0.12 -2.81 16 18 C -0.11 -2.22 10.04 22.30 0.22 -2.00 16 19 C -0.12 -1.98 10.05 22.24 0.22 -1.75 16 20 C -0.12 -1.97 10.05 22.24 0.22 -1.74 16 21 C -0.12 -2.30 10.04 22.30 0.22 -2.08 16 22 C -0.11 -2.67 6.14 -19.60 -0.12 -2.79 16 23 C -0.07 -1.89 6.10 30.52 0.19 -1.71 16 24 H 0.08 4.56 6.07 -2.39 -0.01 4.54 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 30 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 2.51 6.99 -2.39 -0.02 2.49 16 Total: -1.00 -67.61 305.59 6.08 -61.52 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.07 Total: 14.26 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 2.93 Total: -23.32 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.24 Total: -52.83 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.18 Total: -44.55 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -67.61 6.08 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763975314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.801 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds